Wall clock time and date at job start Tue Mar 31 2020 22:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86793 * 120.00214 * 2 1 4 4 H 1.48493 * 109.47401 * 269.99793 * 3 2 1 5 5 H 1.48507 * 109.47120 * 30.00191 * 3 2 1 6 6 H 1.48504 * 109.46747 * 149.99587 * 3 2 1 7 7 C 1.38660 * 119.99574 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99909 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99753 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99645 * 185.05733 * 9 7 2 11 11 C 1.38880 * 120.06521 * 354.46423 * 10 9 7 12 12 C 1.38107 * 119.92558 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06837 * 0.02634 * 12 11 10 14 14 C 1.50702 * 119.92869 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.47058 * 89.99769 * 14 13 12 16 16 C 1.34775 * 119.99661 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00728 * 359.97438 * 16 15 14 18 18 C 1.50706 * 120.00136 * 180.02562 * 16 15 14 19 19 H 1.08993 * 110.83100 * 56.28416 * 18 16 15 20 20 C 1.54707 * 110.96387 * 292.55638 * 18 16 15 21 21 O 1.43779 * 102.78096 * 216.54199 * 20 18 16 22 22 C 1.36138 * 109.23725 * 27.75991 * 21 20 18 23 23 C 1.39283 * 129.89075 * 161.57113 * 22 21 20 24 24 C 1.37927 * 120.23988 * 179.06711 * 23 22 21 25 25 C 1.38287 * 120.35360 * 0.02562 * 24 23 22 26 26 C 1.38342 * 119.76429 * 0.41540 * 25 24 23 27 27 C 1.37750 * 119.97826 * 359.44349 * 26 25 24 28 28 C 1.38298 * 120.14089 * 0.24695 * 13 12 11 29 29 C 1.38103 * 120.06871 * 359.45799 * 28 13 12 30 30 H 0.96996 * 119.99611 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.03921 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.95948 * 179.97438 * 12 11 10 33 33 H 1.09004 * 109.46677 * 329.99692 * 14 13 12 34 34 H 1.09004 * 109.47209 * 209.99992 * 14 13 12 35 35 H 0.96996 * 119.99962 * 359.97438 * 15 14 13 36 36 H 1.09002 * 110.75024 * 334.86444 * 20 18 16 37 37 H 1.08994 * 110.75344 * 98.03941 * 20 18 16 38 38 H 1.08004 * 119.87673 * 359.05094 * 23 22 21 39 39 H 1.08007 * 119.82329 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.11466 * 180.13492 * 25 24 23 41 41 H 1.08001 * 120.01266 * 179.72762 * 26 25 24 42 42 H 1.07999 * 119.96678 * 179.70114 * 28 13 12 43 43 H 1.07995 * 120.03445 * 180.27351 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4399 0.7002 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3345 -2.3685 0.0005 10 6 2.0698 -3.5047 0.1077 11 6 3.4570 -3.4396 0.0953 12 6 4.2021 -4.5973 0.2039 13 6 3.5682 -5.8205 0.3245 14 6 4.3843 -7.0819 0.4423 15 7 4.6549 -7.3583 1.8553 16 6 5.3740 -8.4435 2.2039 17 8 5.7968 -9.1916 1.3480 18 6 5.6520 -8.7282 3.6575 19 1 4.7232 -8.7942 4.2241 20 6 6.5929 -7.6586 4.2610 21 8 7.4084 -8.4251 5.1636 22 6 7.4939 -9.7067 4.7124 23 6 8.4116 -10.7056 5.0287 24 6 8.2993 -11.9573 4.4602 25 6 7.2760 -12.2319 3.5715 26 6 6.3658 -11.2425 3.2451 27 6 6.4744 -9.9926 3.8138 28 6 2.1869 -5.8892 0.3316 29 6 1.4362 -4.7345 0.2294 30 1 -0.4849 0.8400 0.0004 31 1 3.9525 -2.4848 -0.0001 32 1 5.2809 -4.5473 0.1939 33 1 5.3270 -6.9558 -0.0903 34 1 3.8306 -7.9148 0.0087 35 1 4.3172 -6.7598 2.5399 36 1 7.2038 -7.1991 3.4840 37 1 6.0223 -6.9020 4.7995 38 1 9.2141 -10.4992 5.7213 39 1 9.0149 -12.7268 4.7099 40 1 7.1905 -13.2140 3.1303 41 1 5.5677 -11.4514 2.5480 42 1 1.6948 -6.8464 0.4210 43 1 0.3576 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172018393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:54 Heat of formation + Delta-G solvation = -39.678557 kcal Electronic energy + Delta-G solvation = -27265.964488 eV Core-core repulsion = 23242.350279 eV Total energy + Delta-G solvation = -4023.614208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68252 -39.57619 -38.98667 -37.65610 -36.93152 -34.54488 -33.13095 -32.41034 -30.50584 -30.33409 -30.15691 -29.25618 -26.08308 -25.06955 -24.04601 -22.79495 -22.20199 -22.11985 -20.72262 -20.34315 -18.14618 -17.81418 -17.73620 -17.08089 -16.93380 -16.05592 -15.75513 -15.55227 -15.30682 -14.71437 -14.64280 -14.29828 -14.20390 -13.78247 -13.72615 -13.56806 -13.51778 -13.38753 -12.96407 -12.85183 -12.80190 -12.42259 -12.08372 -11.94252 -11.72990 -11.46016 -11.24206 -11.08583 -11.00350 -10.86688 -10.75336 -10.53123 -10.02319 -9.48676 -9.15409 -9.10140 -8.95902 -8.43596 -8.35474 -7.39312 -6.57789 -4.16787 1.01461 1.15901 1.98681 2.06378 2.41284 2.89800 3.03859 3.06135 3.10970 3.17530 3.56135 3.86272 3.91269 4.20210 4.40333 4.56008 4.60451 4.77072 4.84075 4.96768 5.05097 5.09523 5.12794 5.14850 5.20554 5.23698 5.34127 5.40218 5.58803 5.72671 5.75321 5.83250 6.04818 6.05960 6.17155 6.26067 6.28034 6.32196 6.35886 6.53261 6.73628 6.88657 6.89606 7.07467 7.20150 7.29336 7.42950 7.65044 7.86675 8.07092 8.87417 9.54863 10.59537 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.001920 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.959308 B =14582.402207 C =15318.127543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.217 4.217 14 C 0.179 3.821 15 N -0.719 5.719 16 C 0.519 3.481 17 O -0.531 6.531 18 C -0.103 4.103 19 H 0.122 0.878 20 C 0.065 3.935 21 O -0.300 6.300 22 C 0.106 3.894 23 C -0.143 4.143 24 C -0.083 4.083 25 C -0.153 4.153 26 C -0.040 4.040 27 C -0.153 4.153 28 C -0.054 4.054 29 C -0.195 4.195 30 H 0.272 0.728 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.402 0.598 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.112 0.888 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.635 -18.172 8.912 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.069 4.069 13 C -0.219 4.219 14 C 0.057 3.943 15 N -0.370 5.370 16 C 0.304 3.696 17 O -0.407 6.407 18 C -0.124 4.124 19 H 0.140 0.860 20 C -0.011 4.011 21 O -0.214 6.214 22 C 0.061 3.939 23 C -0.162 4.162 24 C -0.101 4.101 25 C -0.171 4.171 26 C -0.058 4.058 27 C -0.154 4.154 28 C -0.073 4.073 29 C -0.215 4.215 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.237 0.763 36 H 0.101 0.899 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.130 0.870 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.581 -18.351 8.434 23.795 hybrid contribution 0.095 1.294 0.118 1.303 sum 12.677 -17.057 8.553 22.909 Atomic orbital electron populations 1.70036 1.06016 1.27940 1.45211 1.25333 0.95877 0.98973 0.96291 0.85688 0.78932 0.79862 0.78835 1.19769 1.20149 1.19115 1.21358 0.91873 0.80689 1.53082 0.88888 1.83981 1.34541 1.11589 1.77347 1.19445 0.90323 0.88060 0.91592 1.21162 0.93774 0.98972 1.11716 1.20638 0.98357 0.91624 0.96296 1.19177 0.93550 0.93520 1.15616 1.20009 0.98584 0.95024 0.80649 1.46381 1.54330 1.26473 1.09850 1.20056 0.78433 0.81310 0.89804 1.90716 1.51059 1.47578 1.51388 1.21583 1.01049 0.94088 0.95694 0.86006 1.23806 0.91320 0.93182 0.92770 1.86849 1.69235 1.18578 1.46717 1.19560 0.94366 0.85565 0.94428 1.20217 0.99277 0.92098 1.04586 1.20888 0.97810 0.95510 0.95907 1.21064 0.96347 0.99469 1.00193 1.20356 0.98543 0.90654 0.96279 1.20200 0.97376 0.95403 1.02412 1.20527 0.92743 0.96826 0.97174 1.20220 0.99704 0.90244 1.11287 0.91825 0.85390 0.87412 0.91490 0.91418 0.76302 0.89910 0.86427 0.85432 0.85172 0.85431 0.85518 0.86970 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.26 13.67 55.48 0.76 -23.50 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 19.69 29.55 -169.99 -5.02 14.66 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.39 -10.50 9.49 30.89 0.29 -10.21 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 9 O -0.17 -4.68 9.76 0.02 0.00 -4.67 16 10 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 11 C -0.24 -4.73 9.17 -39.39 -0.36 -5.09 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.22 -3.26 5.25 -104.58 -0.55 -3.81 16 14 C 0.18 2.31 5.80 -5.19 -0.03 2.28 16 15 N -0.72 -7.93 5.55 -61.47 -0.34 -8.28 16 16 C 0.52 6.19 7.06 -10.98 -0.08 6.12 16 17 O -0.53 -8.20 15.15 5.55 0.08 -8.11 16 18 C -0.10 -1.00 3.52 -91.56 -0.32 -1.32 16 19 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 20 C 0.06 0.57 7.54 38.06 0.29 0.85 16 21 O -0.30 -3.32 11.10 -20.18 -0.22 -3.55 16 22 C 0.11 1.20 7.04 -38.96 -0.27 0.92 16 23 C -0.14 -1.38 10.06 -39.31 -0.40 -1.77 16 24 C -0.08 -0.69 10.02 -39.68 -0.40 -1.09 16 25 C -0.15 -1.38 10.07 -39.52 -0.40 -1.78 16 26 C -0.04 -0.44 9.06 -39.72 -0.36 -0.80 16 27 C -0.15 -1.73 5.40 -104.10 -0.56 -2.30 16 28 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 29 C -0.20 -3.79 9.99 -39.39 -0.39 -4.18 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.13 2.58 5.64 -52.49 -0.30 2.29 16 32 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.40 3.77 8.46 -40.82 -0.35 3.43 16 36 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 37 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.13 1.36 7.79 -52.49 -0.41 0.96 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -31.88 371.20 -8.91 -40.79 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.09 Total: 7.36 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -4.66 Total: -20.29 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.42 Total: -31.78 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.14 Total: -16.34 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.88 -8.91 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172018393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.109 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds