Wall clock time and date at job start Tue Mar 31 2020 22:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86793 * 120.00214 * 2 1 4 4 H 1.48493 * 109.47401 * 269.99793 * 3 2 1 5 5 H 1.48507 * 109.47120 * 30.00191 * 3 2 1 6 6 H 1.48504 * 109.46747 * 149.99587 * 3 2 1 7 7 C 1.38660 * 119.99574 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99909 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99753 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99645 * 185.05733 * 9 7 2 11 11 C 1.38880 * 120.06521 * 354.46423 * 10 9 7 12 12 C 1.38107 * 119.92558 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06837 * 0.02634 * 12 11 10 14 14 C 1.50702 * 119.92869 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.47058 * 89.99769 * 14 13 12 16 16 C 1.34775 * 119.99661 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00728 * 359.97438 * 16 15 14 18 18 C 1.50706 * 120.00136 * 180.02562 * 16 15 14 19 19 H 1.08993 * 110.83100 * 56.28416 * 18 16 15 20 20 C 1.54707 * 110.96387 * 292.55638 * 18 16 15 21 21 O 1.43779 * 102.78096 * 216.54199 * 20 18 16 22 22 C 1.36138 * 109.23725 * 27.75991 * 21 20 18 23 23 C 1.39283 * 129.89075 * 161.57113 * 22 21 20 24 24 C 1.37927 * 120.23988 * 179.06711 * 23 22 21 25 25 C 1.38287 * 120.35360 * 0.02562 * 24 23 22 26 26 C 1.38342 * 119.76429 * 0.41540 * 25 24 23 27 27 C 1.37750 * 119.97826 * 359.44349 * 26 25 24 28 28 C 1.38298 * 120.14089 * 0.24695 * 13 12 11 29 29 C 1.38103 * 120.06871 * 359.45799 * 28 13 12 30 30 H 0.96996 * 119.99611 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.03921 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.95948 * 179.97438 * 12 11 10 33 33 H 1.09004 * 109.46677 * 329.99692 * 14 13 12 34 34 H 1.09004 * 109.47209 * 209.99992 * 14 13 12 35 35 H 0.96996 * 119.99962 * 359.97438 * 15 14 13 36 36 H 1.09002 * 110.75024 * 334.86444 * 20 18 16 37 37 H 1.08994 * 110.75344 * 98.03941 * 20 18 16 38 38 H 1.08004 * 119.87673 * 359.05094 * 23 22 21 39 39 H 1.08007 * 119.82329 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.11466 * 180.13492 * 25 24 23 41 41 H 1.08001 * 120.01266 * 179.72762 * 26 25 24 42 42 H 1.07999 * 119.96678 * 179.70114 * 28 13 12 43 43 H 1.07995 * 120.03445 * 180.27351 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4399 0.7002 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3345 -2.3685 0.0005 10 6 2.0698 -3.5047 0.1077 11 6 3.4570 -3.4396 0.0953 12 6 4.2021 -4.5973 0.2039 13 6 3.5682 -5.8205 0.3245 14 6 4.3843 -7.0819 0.4423 15 7 4.6549 -7.3583 1.8553 16 6 5.3740 -8.4435 2.2039 17 8 5.7968 -9.1916 1.3480 18 6 5.6520 -8.7282 3.6575 19 1 4.7232 -8.7942 4.2241 20 6 6.5929 -7.6586 4.2610 21 8 7.4084 -8.4251 5.1636 22 6 7.4939 -9.7067 4.7124 23 6 8.4116 -10.7056 5.0287 24 6 8.2993 -11.9573 4.4602 25 6 7.2760 -12.2319 3.5715 26 6 6.3658 -11.2425 3.2451 27 6 6.4744 -9.9926 3.8138 28 6 2.1869 -5.8892 0.3316 29 6 1.4362 -4.7345 0.2294 30 1 -0.4849 0.8400 0.0004 31 1 3.9525 -2.4848 -0.0001 32 1 5.2809 -4.5473 0.1939 33 1 5.3270 -6.9558 -0.0903 34 1 3.8306 -7.9148 0.0087 35 1 4.3172 -6.7598 2.5399 36 1 7.2038 -7.1991 3.4840 37 1 6.0223 -6.9020 4.7995 38 1 9.2141 -10.4992 5.7213 39 1 9.0149 -12.7268 4.7099 40 1 7.1905 -13.2140 3.1303 41 1 5.5677 -11.4514 2.5480 42 1 1.6948 -6.8464 0.4210 43 1 0.3576 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172018393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:53 Heat of formation + Delta-G solvation = -59.630928 kcal Electronic energy + Delta-G solvation = -27266.829687 eV Core-core repulsion = 23242.350279 eV Total energy + Delta-G solvation = -4024.479408 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.44470 -40.92672 -40.23315 -38.48881 -38.35626 -35.70929 -34.30377 -33.88910 -31.85569 -31.56542 -30.98595 -30.15124 -27.70431 -26.47567 -24.88277 -23.65590 -23.59484 -22.96243 -22.13015 -21.28764 -19.88018 -18.96094 -18.53665 -18.45946 -17.72437 -16.95917 -16.65731 -16.59687 -16.42829 -16.19117 -15.97775 -15.63106 -15.53428 -15.13579 -14.87119 -14.65378 -14.39856 -14.35731 -14.21200 -14.04551 -13.71957 -13.62001 -13.37704 -13.03698 -12.98435 -12.64182 -12.54110 -12.37500 -12.24327 -12.12272 -11.92514 -11.76801 -11.20641 -11.06067 -10.79341 -10.13081 -9.86303 -9.81524 -9.17566 -9.01152 -8.48749 -6.16910 0.29320 0.41994 0.54197 0.57314 1.35872 1.43848 1.48899 1.52702 2.11746 2.16795 2.27053 2.77701 2.87386 3.16094 3.17398 3.48167 3.50172 3.75623 3.89132 3.90313 4.02242 4.07716 4.16964 4.22832 4.44115 4.45954 4.47214 4.51786 4.56070 4.57079 4.68955 4.75506 4.80194 5.03662 5.06502 5.13937 5.26036 5.33752 5.37336 5.45996 5.52111 5.56615 5.63407 5.68948 5.74019 6.01075 6.15469 6.17675 6.50678 6.96171 7.15036 7.75380 8.73931 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.001920 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.959308 B =14582.402207 C =15318.127543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.122 3.878 11 C -0.244 4.244 12 C -0.045 4.045 13 C -0.182 4.182 14 C 0.185 3.815 15 N -0.710 5.710 16 C 0.525 3.475 17 O -0.567 6.567 18 C -0.097 4.097 19 H 0.144 0.856 20 C 0.064 3.936 21 O -0.313 6.313 22 C 0.083 3.917 23 C -0.152 4.152 24 C -0.080 4.080 25 C -0.155 4.155 26 C -0.060 4.060 27 C -0.173 4.173 28 C -0.043 4.043 29 C -0.205 4.205 30 H 0.273 0.727 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.162 0.838 40 H 0.149 0.851 41 H 0.120 0.880 42 H 0.148 0.852 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.199 -20.207 9.900 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.071 3.929 11 C -0.263 4.263 12 C -0.063 4.063 13 C -0.183 4.183 14 C 0.062 3.938 15 N -0.362 5.362 16 C 0.311 3.689 17 O -0.445 6.445 18 C -0.118 4.118 19 H 0.161 0.839 20 C -0.011 4.011 21 O -0.227 6.227 22 C 0.038 3.962 23 C -0.170 4.170 24 C -0.098 4.098 25 C -0.173 4.173 26 C -0.078 4.078 27 C -0.175 4.175 28 C -0.061 4.061 29 C -0.224 4.224 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.250 0.750 36 H 0.096 0.904 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.138 0.862 42 H 0.165 0.835 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.175 -20.431 9.442 27.145 hybrid contribution -0.531 1.468 -0.166 1.570 sum 14.644 -18.963 9.276 25.692 Atomic orbital electron populations 1.70180 1.08011 1.28844 1.48579 1.26579 0.96827 1.02757 0.95836 0.84600 0.77894 0.74650 0.79196 1.18978 1.19725 1.17496 1.21823 0.92564 0.81308 1.53172 0.87855 1.83951 1.36103 1.12700 1.80798 1.20009 0.91662 0.87947 0.93243 1.21248 0.92982 1.00119 1.11952 1.20942 0.99815 0.90688 0.94881 1.19465 0.93406 0.94072 1.11369 1.19901 0.98370 0.93653 0.81868 1.46154 1.54141 1.26566 1.09290 1.20337 0.77520 0.80615 0.90418 1.90707 1.52466 1.48775 1.52583 1.21597 1.02086 0.93903 0.94207 0.83889 1.23997 0.91074 0.93161 0.92887 1.86825 1.69800 1.18734 1.47360 1.19856 0.95109 0.86029 0.95168 1.20591 0.99377 0.92305 1.04774 1.21275 0.97896 0.95747 0.94882 1.21401 0.95880 1.00035 0.99989 1.20505 0.99227 0.91297 0.96792 1.20447 0.98053 0.96063 1.02894 1.20881 0.93085 0.96951 0.95214 1.20455 1.00089 0.90435 1.11450 0.91821 0.86227 0.84262 0.91118 0.90762 0.74989 0.90356 0.83478 0.83963 0.82071 0.83298 0.86178 0.83462 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.89 13.67 21.62 0.30 -54.59 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 3 Si 1.02 41.40 29.55 68.60 2.03 43.42 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.41 -23.04 9.49 67.92 0.64 -22.40 16 8 H 0.10 5.25 5.20 -2.92 -0.02 5.23 16 9 O -0.23 -13.20 9.76 -22.84 -0.22 -13.43 16 10 C 0.12 5.67 6.65 22.58 0.15 5.82 16 11 C -0.24 -9.66 9.17 22.39 0.21 -9.46 16 12 C -0.04 -1.34 9.69 22.25 0.22 -1.13 16 13 C -0.18 -4.83 5.25 -19.84 -0.10 -4.93 16 14 C 0.18 4.03 5.80 85.63 0.50 4.53 16 15 N -0.71 -13.11 5.55 -466.77 -2.59 -15.70 16 16 C 0.53 11.16 7.06 87.66 0.62 11.78 16 17 O -0.57 -16.42 15.15 -3.05 -0.05 -16.47 16 18 C -0.10 -1.66 3.52 -11.40 -0.04 -1.70 16 19 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 20 C 0.06 0.96 7.54 72.56 0.55 1.51 16 21 O -0.31 -6.41 11.10 -95.12 -1.06 -7.47 16 22 C 0.08 1.76 7.04 22.67 0.16 1.92 16 23 C -0.15 -2.64 10.06 22.45 0.23 -2.41 16 24 C -0.08 -1.14 10.02 22.21 0.22 -0.92 16 25 C -0.16 -2.50 10.07 22.31 0.22 -2.27 16 26 C -0.06 -1.24 9.06 22.18 0.20 -1.04 16 27 C -0.17 -3.69 5.40 -19.53 -0.11 -3.80 16 28 C -0.04 -1.25 9.69 22.25 0.22 -1.03 16 29 C -0.21 -7.94 9.99 22.39 0.22 -7.71 16 30 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.12 4.88 5.64 -2.91 -0.02 4.87 16 32 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.07 1.59 8.08 -2.38 -0.02 1.57 16 34 H 0.07 1.63 8.08 -2.38 -0.02 1.61 16 35 H 0.41 6.09 8.46 -92.71 -0.78 5.31 16 36 H 0.08 1.23 7.91 -2.39 -0.02 1.22 16 37 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 39 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 41 H 0.12 2.52 7.79 -2.91 -0.02 2.50 16 42 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -74.57 371.20 3.25 -71.32 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.27 Total: 26.90 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: 4.57 Total: -33.99 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -2.29 Total: -70.30 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.33 Total: -37.36 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -74.57 3.25 -71.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172018393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.694 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds