Wall clock time and date at job start Tue Mar 31 2020 22:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 120.00272 * 2 1 4 4 H 1.48499 * 109.47070 * 270.00058 * 3 2 1 5 5 H 1.48505 * 109.46917 * 30.00536 * 3 2 1 6 6 H 1.48506 * 109.46998 * 150.00367 * 3 2 1 7 7 C 1.38658 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99962 * 179.97438 * 7 2 1 9 9 O 1.34823 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00295 * 174.94131 * 9 7 2 11 11 C 1.38882 * 120.07193 * 185.25833 * 10 9 7 12 12 C 1.38094 * 119.93163 * 179.72655 * 11 10 9 13 13 C 1.38295 * 120.06816 * 0.54560 * 12 11 10 14 14 C 1.50703 * 119.93181 * 179.74630 * 13 12 11 15 15 N 1.46504 * 109.47378 * 269.98434 * 14 13 12 16 16 C 1.34772 * 120.00113 * 180.02562 * 15 14 13 17 17 O 1.21289 * 120.00038 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00364 * 180.02562 * 16 15 14 19 19 H 1.09007 * 110.82976 * 297.73359 * 18 16 15 20 20 C 1.54713 * 110.94295 * 61.44828 * 18 16 15 21 21 O 1.43759 * 102.79368 * 92.79773 * 20 18 16 22 22 C 1.36125 * 109.28754 * 27.55068 * 21 20 18 23 23 C 1.39298 * 129.87806 * 161.43909 * 22 21 20 24 24 C 1.37923 * 120.24220 * 179.56101 * 23 22 21 25 25 C 1.38289 * 120.35488 * 0.06222 * 24 23 22 26 26 C 1.38349 * 119.76465 * 0.15379 * 25 24 23 27 27 C 1.37739 * 119.97520 * 359.97331 * 26 25 24 28 28 C 1.38298 * 120.13953 * 359.73393 * 13 12 11 29 29 C 1.38100 * 120.07254 * 359.97438 * 28 13 12 30 30 H 0.96997 * 120.00531 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.02739 * 359.97438 * 11 10 9 32 32 H 1.08000 * 119.96253 * 180.25915 * 12 11 10 33 33 H 1.08999 * 109.46870 * 29.98749 * 14 13 12 34 34 H 1.08997 * 109.47300 * 149.97893 * 14 13 12 35 35 H 0.96998 * 119.99750 * 0.02562 * 15 14 13 36 36 H 1.09003 * 110.74705 * 211.12638 * 20 18 16 37 37 H 1.08997 * 110.74641 * 334.47015 * 20 18 16 38 38 H 1.08001 * 119.87620 * 359.59025 * 23 22 21 39 39 H 1.08002 * 119.82397 * 180.02562 * 24 23 22 40 40 H 1.07995 * 120.11413 * 180.17029 * 25 24 23 41 41 H 1.07994 * 120.01273 * 180.02562 * 26 25 24 42 42 H 1.08000 * 119.96867 * 180.02562 * 28 13 12 43 43 H 1.07994 * 120.03839 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7002 6 1 3.5472 1.4400 0.7000 7 6 2.0087 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0016 10 6 2.0698 -3.5046 -0.1087 11 6 1.4364 -4.7349 -0.2263 12 6 2.1872 -5.8883 -0.3407 13 6 3.5684 -5.8202 -0.3271 14 6 4.3847 -7.0814 -0.4465 15 7 4.6426 -7.6245 0.8895 16 6 5.3595 -8.7571 1.0296 17 8 5.7909 -9.3269 0.0496 18 6 5.6244 -9.3162 2.4037 19 1 6.2071 -8.6154 3.0017 20 6 4.3009 -9.6833 3.1159 21 8 4.1322 -11.0706 2.7789 22 6 5.3530 -11.6321 2.5612 23 6 5.7307 -12.9728 2.5528 24 6 7.0397 -13.3242 2.2974 25 6 7.9891 -12.3498 2.0488 26 6 7.6231 -11.0157 2.0597 27 6 6.3169 -10.6625 2.3171 28 6 4.2022 -4.5971 -0.2043 29 6 3.4571 -3.4395 -0.0955 30 1 -0.4851 -0.8400 -0.0004 31 1 0.3578 -4.7891 -0.2321 32 1 1.6951 -6.8449 -0.4364 33 1 3.8358 -7.8148 -1.0372 34 1 5.3320 -6.8560 -0.9362 35 1 4.2973 -7.1690 1.6731 36 1 4.3947 -9.5565 4.1945 37 1 3.4749 -9.0881 2.7266 38 1 4.9957 -13.7401 2.7466 39 1 7.3251 -14.3658 2.2922 40 1 9.0124 -12.6295 1.8465 41 1 8.3611 -10.2515 1.8656 42 1 5.2810 -4.5471 -0.1944 43 1 3.9525 -2.4847 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172018397.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:56 Heat of formation + Delta-G solvation = -65.840423 kcal Electronic energy + Delta-G solvation = -27358.821383 eV Core-core repulsion = 23334.072710 eV Total energy + Delta-G solvation = -4024.748672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.50596 -41.03589 -40.22794 -38.63171 -38.35076 -35.79523 -34.34508 -33.91403 -31.93828 -31.60490 -31.00427 -30.14102 -27.40344 -26.45973 -24.97330 -23.67173 -23.54992 -22.96209 -22.27827 -21.38412 -20.30199 -19.09037 -18.66864 -17.94588 -17.77088 -17.26793 -17.09627 -16.70054 -16.40310 -16.03516 -15.85681 -15.67108 -15.61776 -15.16376 -15.06846 -14.89353 -14.56630 -14.42917 -14.29769 -13.99812 -13.62359 -13.47618 -13.05509 -12.92879 -12.73074 -12.64670 -12.50765 -12.40101 -12.19405 -12.10930 -11.92767 -11.77149 -11.31939 -11.09177 -10.77172 -10.17761 -9.90600 -9.88798 -9.19247 -9.09925 -8.95476 -6.26822 0.26581 0.41509 0.46239 0.48072 1.46551 1.49140 1.61009 1.77013 2.12874 2.27148 2.33995 2.75361 2.87711 3.09740 3.13914 3.29757 3.49024 3.72705 3.82629 3.88339 3.93879 4.08333 4.17286 4.21960 4.36575 4.36955 4.43201 4.48184 4.50841 4.59868 4.66882 4.68843 4.73630 4.92696 5.04955 5.16214 5.19743 5.31087 5.35195 5.43577 5.44659 5.54410 5.64045 5.64548 5.69418 5.98049 6.17521 6.24386 6.47384 6.83512 7.12954 7.58738 8.48862 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028748 B = 0.001864 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.733429 B =15018.662933 C =15290.393802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.044 4.044 3 Si 1.146 2.854 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.487 4.487 8 H 0.094 0.906 9 O -0.249 6.249 10 C 0.125 3.875 11 C -0.204 4.204 12 C -0.043 4.043 13 C -0.178 4.178 14 C 0.185 3.815 15 N -0.711 5.711 16 C 0.521 3.479 17 O -0.572 6.572 18 C -0.098 4.098 19 H 0.154 0.846 20 C 0.059 3.941 21 O -0.323 6.323 22 C 0.085 3.915 23 C -0.156 4.156 24 C -0.082 4.082 25 C -0.153 4.153 26 C -0.067 4.067 27 C -0.169 4.169 28 C -0.044 4.044 29 C -0.241 4.241 30 H 0.261 0.739 31 H 0.117 0.883 32 H 0.148 0.852 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.414 0.586 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.934 -22.606 7.929 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.240 4.240 3 Si 0.962 3.038 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.562 4.562 8 H 0.111 0.889 9 O -0.156 6.156 10 C 0.074 3.926 11 C -0.223 4.223 12 C -0.062 4.062 13 C -0.179 4.179 14 C 0.062 3.938 15 N -0.363 5.363 16 C 0.308 3.692 17 O -0.451 6.451 18 C -0.119 4.119 19 H 0.172 0.828 20 C -0.016 4.016 21 O -0.238 6.238 22 C 0.040 3.960 23 C -0.174 4.174 24 C -0.099 4.099 25 C -0.171 4.171 26 C -0.086 4.086 27 C -0.170 4.170 28 C -0.062 4.062 29 C -0.260 4.260 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.166 0.834 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.250 0.750 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.156 0.844 39 H 0.178 0.822 40 H 0.170 0.830 41 H 0.150 0.850 42 H 0.159 0.841 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.554 -21.399 7.232 27.425 hybrid contribution -0.480 -0.962 0.089 1.079 sum 15.074 -22.361 7.320 27.943 Atomic orbital electron populations 1.70684 1.07798 1.30195 1.46383 1.28360 0.96892 1.04936 0.93860 0.82549 0.73927 0.68825 0.78482 1.19132 1.19918 1.18104 1.22619 0.93736 0.82777 1.57090 0.88853 1.83650 1.36972 1.13265 1.81735 1.19885 0.91626 0.87381 0.93660 1.20453 1.00146 0.90311 1.11369 1.20886 0.93093 0.96999 0.95201 1.19480 0.93420 0.94018 1.10990 1.19881 0.98483 0.91340 0.84117 1.46106 1.54458 1.25638 1.10105 1.20595 0.77493 0.80131 0.90975 1.90708 1.52314 1.60451 1.41649 1.21638 0.98774 0.96882 0.94604 0.82824 1.24121 0.96192 0.79292 1.01957 1.86800 1.26174 1.25593 1.85206 1.19905 0.84212 0.94742 0.97160 1.20591 0.98009 0.92350 1.06461 1.21274 0.91186 1.01267 0.96208 1.21406 1.01266 0.91861 1.02558 1.20582 0.94105 0.97579 0.96288 1.20407 0.95451 0.93441 1.07707 1.20955 0.99938 0.90602 0.94750 1.21264 0.92998 1.00141 1.11594 0.93033 0.86528 0.83434 0.91175 0.90979 0.74965 0.86310 0.86227 0.84397 0.82213 0.82955 0.85002 0.84071 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.09 13.70 21.61 0.30 -55.79 16 2 C -0.04 -2.46 5.49 84.84 0.47 -1.99 16 3 Si 1.15 46.74 29.92 68.60 2.05 48.79 16 4 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.49 -27.42 9.49 67.92 0.64 -26.77 16 8 H 0.09 4.87 5.20 -2.91 -0.02 4.85 16 9 O -0.25 -14.18 9.16 -22.67 -0.21 -14.38 16 10 C 0.12 5.78 6.65 22.58 0.15 5.93 16 11 C -0.20 -7.83 9.99 22.39 0.22 -7.60 16 12 C -0.04 -1.27 9.69 22.25 0.22 -1.06 16 13 C -0.18 -4.81 5.25 -19.84 -0.10 -4.92 16 14 C 0.18 4.23 5.80 85.63 0.50 4.72 16 15 N -0.71 -13.76 5.28 -466.78 -2.46 -16.22 16 16 C 0.52 11.76 7.16 87.66 0.63 12.39 16 17 O -0.57 -18.05 16.15 -3.06 -0.05 -18.10 16 18 C -0.10 -1.63 3.52 -11.40 -0.04 -1.67 16 19 H 0.15 1.56 8.14 -2.38 -0.02 1.54 16 20 C 0.06 0.85 7.53 72.57 0.55 1.39 16 21 O -0.32 -7.16 11.10 -94.97 -1.05 -8.21 16 22 C 0.08 1.87 7.04 22.68 0.16 2.03 16 23 C -0.16 -2.86 10.06 22.45 0.23 -2.63 16 24 C -0.08 -1.17 10.02 22.21 0.22 -0.95 16 25 C -0.15 -2.29 10.07 22.31 0.22 -2.06 16 26 C -0.07 -1.24 10.03 22.18 0.22 -1.02 16 27 C -0.17 -3.48 4.94 -19.53 -0.10 -3.58 16 28 C -0.04 -1.34 9.69 22.25 0.22 -1.12 16 29 C -0.24 -9.67 9.17 22.39 0.21 -9.47 16 30 H 0.26 16.64 7.97 -92.71 -0.74 15.91 16 31 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 34 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 35 H 0.41 6.20 8.29 -92.71 -0.77 5.44 16 36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.12 1.45 7.53 -2.39 -0.02 1.43 16 38 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 42 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 43 H 0.12 4.98 5.64 -2.91 -0.02 4.97 16 Total: -1.00 -77.73 371.70 3.50 -74.23 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.32 Total: 28.06 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 4.60 Total: -38.37 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -2.17 Total: -72.01 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.31 Total: -40.70 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.05 Total: 48.79 kcal Total: -77.73 3.50 -74.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172018397.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.387 kcal (2) G-P(sol) polarization free energy of solvation -77.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds