Wall clock time and date at job start Tue Mar 31 2020 22:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 S 1.65592 * 120.00163 * 164.99854 * 15 14 13 17 17 O 1.42097 * 104.27888 * 181.07107 * 16 15 14 18 18 O 1.42098 * 104.27919 * 308.92813 * 16 15 14 19 19 C 1.81397 * 104.44891 * 65.00085 * 16 15 14 20 20 C 1.53006 * 109.47247 * 179.97438 * 19 16 15 21 21 C 1.54268 * 110.03086 * 292.91051 * 20 19 16 22 22 C 1.54963 * 104.15548 * 217.13631 * 21 20 19 23 23 C 1.54886 * 102.78271 * 37.88737 * 22 21 20 24 24 C 1.53875 * 110.03428 * 175.69038 * 20 19 16 25 25 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 26 26 C 1.38101 * 120.07425 * 359.95492 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 30 30 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 31 31 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 32 32 H 0.97000 * 119.99434 * 345.00144 * 15 14 13 33 33 H 1.08998 * 109.47408 * 299.99627 * 19 16 15 34 34 H 1.08992 * 109.47233 * 59.99965 * 19 16 15 35 35 H 1.09004 * 110.01612 * 54.30080 * 20 19 16 36 36 H 1.08999 * 110.48199 * 335.77707 * 21 20 19 37 37 H 1.08996 * 110.48608 * 98.42654 * 21 20 19 38 38 H 1.09003 * 110.71977 * 279.57124 * 22 21 20 39 39 H 1.08997 * 110.92373 * 156.29728 * 22 21 20 40 40 H 1.09000 * 110.49082 * 203.40644 * 23 22 21 41 41 H 1.08992 * 110.60127 * 80.81433 * 23 22 21 42 42 H 1.09005 * 110.03233 * 238.57030 * 24 20 19 43 43 H 1.09006 * 110.03026 * 359.97438 * 24 20 19 44 44 H 1.07999 * 119.96503 * 179.97438 * 25 13 12 45 45 H 1.07992 * 120.03608 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 16 5.1867 -9.1790 1.0612 17 8 5.2970 -9.3591 2.4664 18 8 4.2776 -9.9546 0.2924 19 6 6.8284 -9.1722 0.2897 20 6 7.4427 -10.5702 0.3853 21 6 7.7434 -10.9157 1.8584 22 6 9.0730 -11.7093 1.7978 23 6 9.8616 -10.9724 0.6870 24 6 8.7888 -10.6066 -0.3595 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0951 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6954 -6.8451 -0.4339 30 1 3.8358 -7.8149 -1.0361 31 1 5.3320 -6.8560 -0.9360 32 1 4.4960 -7.0727 1.6744 33 1 6.7363 -8.8864 -0.7582 34 1 7.4696 -8.4579 0.8060 35 1 6.7610 -11.3072 -0.0394 36 1 7.8688 -10.0059 2.4456 37 1 6.9481 -11.5335 2.2754 38 1 8.8904 -12.7469 1.5184 39 1 9.6028 -11.6544 2.7488 40 1 10.6116 -11.6317 0.2500 41 1 10.3310 -10.0718 1.0828 42 1 8.7606 -11.3618 -1.1450 43 1 9.0042 -9.6284 -0.7894 44 1 5.2812 -4.5470 -0.1945 45 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178329435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:06 Heat of formation + Delta-G solvation = -117.977568 kcal Electronic energy + Delta-G solvation = -26407.943327 eV Core-core repulsion = 22516.377770 eV Total energy + Delta-G solvation = -3891.565557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.81459 -39.30671 -38.68572 -38.08855 -36.96127 -35.83676 -34.24399 -32.52186 -31.80463 -30.92151 -29.60294 -27.57991 -26.47924 -25.87809 -23.62658 -22.19006 -21.64529 -20.89468 -20.22076 -19.85794 -18.94943 -18.51181 -17.86955 -17.20904 -16.57520 -16.43678 -16.28200 -15.98246 -15.82260 -15.57432 -15.39580 -15.19715 -14.73674 -14.42343 -14.28328 -14.21154 -13.87564 -13.49346 -13.46522 -13.42384 -13.17457 -13.04217 -12.92580 -12.90576 -12.43111 -12.35423 -12.13773 -12.05712 -12.04027 -11.93217 -11.88225 -11.59019 -11.43640 -11.27541 -11.17333 -10.80112 -10.30761 -9.78627 -8.98247 -8.47502 -6.15833 -0.68577 0.59595 0.61945 1.35939 1.44824 1.53439 1.88048 2.17701 2.81364 2.88165 3.16654 3.28080 3.44499 3.50658 3.57759 3.69110 3.85754 4.07190 4.17162 4.21533 4.22947 4.41320 4.50244 4.51254 4.55832 4.60432 4.64426 4.74765 4.79816 4.82722 4.84659 4.97930 5.02527 5.07419 5.09689 5.15612 5.25714 5.29382 5.30300 5.41004 5.49015 5.56268 5.71038 5.77754 6.02467 6.09564 6.21032 6.97125 7.77771 8.75616 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024233 B = 0.002022 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.159498 B =13846.875244 C =14464.504670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.251 1.251 7 C -0.412 4.412 8 H 0.106 0.894 9 O -0.233 6.233 10 C 0.118 3.882 11 C -0.210 4.210 12 C -0.054 4.054 13 C -0.175 4.175 14 C 0.169 3.831 15 N -1.116 6.116 16 S 2.609 3.391 17 O -0.992 6.992 18 O -0.998 6.998 19 C -0.600 4.600 20 C -0.091 4.091 21 C -0.153 4.153 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.112 4.112 25 C -0.045 4.045 26 C -0.245 4.245 27 H 0.272 0.728 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.420 0.580 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.154 0.846 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.450 -20.284 -1.382 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.223 4.223 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.174 1.174 7 C -0.488 4.488 8 H 0.123 0.877 9 O -0.139 6.139 10 C 0.067 3.933 11 C -0.229 4.229 12 C -0.073 4.073 13 C -0.178 4.178 14 C 0.044 3.956 15 N -0.876 5.876 16 S 2.706 3.294 17 O -0.982 6.982 18 O -0.988 6.988 19 C -0.733 4.733 20 C -0.111 4.111 21 C -0.191 4.191 22 C -0.162 4.162 23 C -0.164 4.164 24 C -0.151 4.151 25 C -0.063 4.063 26 C -0.264 4.264 27 H 0.081 0.919 28 H 0.127 0.873 29 H 0.158 0.842 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.254 0.746 33 H 0.180 0.820 34 H 0.177 0.823 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.172 0.828 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.548 -20.933 -1.106 30.062 hybrid contribution -0.251 1.604 0.228 1.639 sum 21.297 -19.329 -0.878 28.774 Atomic orbital electron populations 1.70190 1.08115 1.28818 1.48786 1.26639 0.96856 1.02902 0.95884 0.84562 0.77840 0.74419 0.79242 1.18782 1.19885 1.17404 1.21854 0.92625 0.81284 1.53077 0.87707 1.83949 1.36201 1.12728 1.81027 1.20004 0.91940 0.87766 0.93571 1.20436 0.99897 0.90768 1.11842 1.20948 0.93935 0.96649 0.95755 1.19587 0.93184 0.94815 1.10193 1.20196 1.00053 0.92496 0.82853 1.55579 1.83545 1.33865 1.14613 1.04804 0.78030 0.72640 0.73894 1.93557 1.88225 1.84871 1.31550 1.93546 1.61920 1.69769 1.73573 1.30585 1.20280 1.06254 1.16213 1.21659 0.99576 0.92688 0.97181 1.22878 0.99168 1.01659 0.95391 1.22512 0.94778 0.99247 0.99647 1.22411 0.97616 1.00605 0.95814 1.22212 0.91745 1.03216 0.97899 1.21052 1.00377 0.90278 0.94626 1.21306 0.92780 1.00466 1.11880 0.91873 0.87314 0.84239 0.89652 0.87514 0.74553 0.81974 0.82342 0.89774 0.90369 0.92001 0.90987 0.90878 0.90576 0.91108 0.90539 0.89868 0.82794 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.21 13.67 21.62 0.30 -55.91 16 2 C -0.03 -1.42 5.49 84.84 0.47 -0.96 16 3 Si 1.02 41.95 29.55 68.60 2.03 43.98 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.41 -23.49 9.49 67.92 0.64 -22.84 16 8 H 0.11 5.39 5.20 -2.91 -0.02 5.37 16 9 O -0.23 -13.81 9.76 -22.72 -0.22 -14.03 16 10 C 0.12 5.70 6.65 22.58 0.15 5.85 16 11 C -0.21 -8.81 9.99 22.39 0.22 -8.58 16 12 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 13 C -0.18 -4.77 5.28 -19.84 -0.10 -4.88 16 14 C 0.17 3.07 6.25 85.63 0.54 3.61 16 15 N -1.12 -20.49 5.88 -190.79 -1.12 -21.61 16 16 S 2.61 49.24 5.25 -56.49 -0.30 48.94 16 17 O -0.99 -25.23 16.97 -127.65 -2.17 -27.40 16 18 O -1.00 -26.18 17.50 -127.65 -2.23 -28.41 16 19 C -0.60 -5.74 5.17 71.98 0.37 -5.37 16 20 C -0.09 -1.05 2.93 -10.07 -0.03 -1.08 16 21 C -0.15 -2.14 5.11 31.70 0.16 -1.98 16 22 C -0.12 -1.31 6.91 31.91 0.22 -1.09 16 23 C -0.13 -1.05 6.83 31.67 0.22 -0.84 16 24 C -0.11 -0.92 6.46 31.32 0.20 -0.71 16 25 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 26 C -0.25 -9.86 9.17 22.39 0.21 -9.66 16 27 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 29 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 30 H 0.09 1.53 7.64 -2.39 -0.02 1.51 16 31 H 0.11 1.09 8.08 -2.39 -0.02 1.07 16 32 H 0.42 8.03 8.61 -96.75 -0.83 7.20 16 33 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.16 0.89 8.02 -2.39 -0.02 0.87 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.11 7.63 -2.39 -0.02 1.09 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 43 H 0.08 0.50 7.67 -2.38 -0.02 0.48 16 44 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 45 H 0.12 4.98 5.64 -2.91 -0.02 4.96 16 Total: -1.00 -80.16 381.12 0.15 -80.01 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.17 Total: 25.60 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 3.70 Total: -51.16 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -0.83 Total: -77.52 kcal Atomic # 8 Polarization: -65.22 SS G_CDS: -4.62 Total: -69.84 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 49.24 SS G_CDS: -0.30 Total: 48.94 kcal Total: -80.16 0.15 -80.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178329435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.967 kcal (2) G-P(sol) polarization free energy of solvation -80.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds