Wall clock time and date at job start Tue Mar 31 2020 22:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42106 * 110.54100 * 291.62280 * 11 10 9 13 13 O 1.42100 * 110.54266 * 68.37418 * 11 10 9 14 14 N 1.65599 * 104.44810 * 180.02562 * 11 10 9 15 15 C 1.46494 * 120.00309 * 64.99866 * 14 11 10 16 16 C 1.52995 * 109.47327 * 164.99823 * 15 14 11 17 17 H 1.09008 * 110.75081 * 57.02068 * 16 15 14 18 18 C 1.55301 * 110.84900 * 293.55081 * 16 15 14 19 19 C 1.54950 * 100.94306 * 207.67666 * 18 16 15 20 20 O 1.43638 * 105.13668 * 36.43844 * 19 18 16 21 21 C 1.43240 * 109.97343 * 335.57770 * 20 19 18 22 22 H 1.09001 * 109.83055 * 121.22742 * 21 20 19 23 23 C 1.50703 * 109.83085 * 242.19714 * 21 20 19 24 24 C 1.38236 * 119.99959 * 37.85728 * 23 21 20 25 25 C 1.38243 * 119.99946 * 179.76696 * 24 23 21 26 26 C 1.38236 * 119.99617 * 0.48694 * 25 24 23 27 27 C 1.38235 * 119.99967 * 359.78837 * 26 25 24 28 28 C 1.38232 * 120.00262 * 359.96044 * 27 26 25 29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 31 31 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 0.97002 * 119.99347 * 244.99779 * 14 11 10 35 35 H 1.08995 * 109.47363 * 285.00275 * 15 14 11 36 36 H 1.09007 * 109.47132 * 45.00047 * 15 14 11 37 37 H 1.09002 * 111.12326 * 325.58769 * 18 16 15 38 38 H 1.09002 * 111.13133 * 89.75865 * 18 16 15 39 39 H 1.08997 * 110.31581 * 155.35674 * 19 18 16 40 40 H 1.09008 * 110.30607 * 277.52923 * 19 18 16 41 41 H 1.07996 * 119.99884 * 359.97438 * 24 23 21 42 42 H 1.07999 * 119.99723 * 180.24819 * 25 24 23 43 43 H 1.07996 * 119.99858 * 179.76696 * 26 25 24 44 44 H 1.08002 * 119.99842 * 179.97438 * 27 26 25 45 45 H 1.07999 * 119.99814 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2330 -0.0002 12 8 0.6640 -5.4200 1.2366 13 8 0.6648 -5.4193 -1.2375 14 7 2.5206 -6.3927 0.0006 15 6 3.4182 -6.5229 1.1510 16 6 4.1492 -7.8649 1.0781 17 1 4.6955 -7.9567 0.1392 18 6 3.1564 -9.0456 1.2574 19 6 4.0893 -10.1250 1.8622 20 8 4.9898 -9.4052 2.7190 21 6 5.0923 -8.0433 2.2872 22 1 4.7895 -7.3758 3.0940 23 6 6.5111 -7.7422 1.8778 24 6 7.2560 -8.6978 1.2123 25 6 8.5558 -8.4199 0.8324 26 6 9.1140 -7.1900 1.1270 27 6 8.3709 -6.2365 1.7975 28 6 7.0694 -6.5125 2.1727 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5566 0.8903 31 1 0.6247 -2.5571 -0.8897 32 1 2.8720 -3.6043 -0.8894 33 1 2.8720 -3.6043 0.8906 34 1 2.6187 -6.9856 -0.7608 35 1 4.1458 -5.7116 1.1378 36 1 2.8374 -6.4751 2.0722 37 1 2.3567 -8.7846 1.9506 38 1 2.7524 -9.3685 0.2979 39 1 3.5101 -10.8444 2.4410 40 1 4.6431 -10.6322 1.0720 41 1 6.8214 -9.6602 0.9862 42 1 9.1364 -9.1651 0.3090 43 1 10.1307 -6.9742 0.8336 44 1 8.8071 -5.2758 2.0280 45 1 6.4891 -5.7677 2.6969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192270050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:05 Heat of formation + Delta-G solvation = -111.319758 kcal Electronic energy + Delta-G solvation = -27195.822859 eV Core-core repulsion = 23304.546006 eV Total energy + Delta-G solvation = -3891.276853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63424 -38.69251 -36.76155 -35.88217 -35.54235 -34.28414 -32.49677 -31.81606 -31.12041 -31.05974 -28.81835 -25.43749 -25.10658 -23.31003 -22.79426 -22.02304 -21.58475 -20.87014 -19.08406 -17.70859 -17.47703 -17.07234 -16.70125 -16.11670 -15.88587 -15.83098 -15.46533 -14.94640 -14.78676 -14.68642 -14.33494 -13.80349 -13.64262 -13.56092 -13.33249 -13.15918 -12.88083 -12.74947 -12.46277 -12.18429 -12.09044 -11.74595 -11.66123 -11.59427 -11.43424 -11.37862 -11.19228 -11.06907 -11.04940 -10.57477 -10.52665 -10.37937 -10.10291 -9.96415 -9.49540 -9.16047 -8.96481 -8.68877 -8.48301 -6.49788 -4.22847 0.63795 1.05034 1.16238 2.96452 3.33549 3.37283 3.39002 3.58246 3.71186 4.03612 4.08560 4.23024 4.36203 4.45436 4.58576 4.63596 4.67112 4.80880 4.82964 4.84865 4.94882 4.95712 5.17367 5.25629 5.26476 5.32491 5.34928 5.42134 5.48807 5.51299 5.51530 5.58027 5.69968 5.78309 5.80759 5.89994 6.21077 6.26976 6.29679 6.32130 6.65441 6.73732 6.92410 6.94205 7.04564 7.93568 8.27205 8.70326 9.49584 10.90095 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.003043 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.290834 B = 9200.718714 C =11136.487546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.016 3.984 3 Si 1.073 2.927 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.601 4.601 8 H 0.055 0.945 9 C 0.015 3.985 10 C -0.583 4.583 11 S 2.593 3.407 12 O -0.966 6.966 13 O -0.967 6.967 14 N -1.125 6.125 15 C 0.126 3.874 16 C -0.118 4.118 17 H 0.096 0.904 18 C -0.153 4.153 19 C 0.048 3.952 20 O -0.368 6.368 21 C 0.127 3.873 22 H 0.096 0.904 23 C -0.097 4.097 24 C -0.099 4.099 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.109 4.109 29 H 0.270 0.730 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.413 0.587 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.867 -20.069 2.681 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.189 4.189 3 Si 0.900 3.100 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.640 4.640 8 H 0.073 0.927 9 C -0.024 4.024 10 C -0.716 4.716 11 S 2.690 3.310 12 O -0.955 6.955 13 O -0.957 6.957 14 N -0.882 5.882 15 C -0.001 4.001 16 C -0.138 4.138 17 H 0.114 0.886 18 C -0.190 4.190 19 C -0.028 4.028 20 O -0.287 6.287 21 C 0.069 3.931 22 H 0.113 0.887 23 C -0.098 4.098 24 C -0.117 4.117 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.127 4.127 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.246 0.754 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.804 -18.609 3.031 23.971 hybrid contribution 0.923 -1.576 -0.603 1.923 sum 15.727 -20.184 2.428 25.703 Atomic orbital electron populations 1.70787 1.06888 1.30817 1.45518 1.25973 0.96531 1.02927 0.93435 0.83487 0.74880 0.75006 0.76605 1.20532 1.21260 1.21287 1.21836 0.94339 0.90760 1.57072 0.92672 1.19071 0.93363 0.92383 0.97616 1.30329 1.13438 1.17572 1.10297 1.05556 0.74669 0.76615 0.74158 1.93546 1.71369 1.84946 1.45687 1.93561 1.71621 1.85320 1.45191 1.55726 1.52991 1.52267 1.27256 1.21219 0.92850 0.96673 0.89374 1.22965 0.95971 0.95404 0.99488 0.88575 1.23388 0.98405 0.94366 1.02862 1.23431 0.90736 0.94808 0.93838 1.88492 1.66014 1.20974 1.53249 1.21559 0.90800 0.84887 0.95894 0.88657 1.20108 0.95854 0.94671 0.99134 1.20919 0.94235 0.98895 0.97656 1.21151 0.95471 0.97136 1.00387 1.21189 0.99924 0.93895 0.98826 1.21160 0.94374 0.99496 0.98611 1.21035 0.95480 0.96337 0.99844 0.91924 0.95723 0.95774 0.85937 0.86174 0.75406 0.91204 0.89665 0.89372 0.89483 0.89368 0.92221 0.86188 0.86153 0.86141 0.85796 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.65 55.43 0.76 -26.75 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 24.62 29.90 -169.99 -5.08 19.54 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.60 -16.65 9.11 -34.44 -0.31 -16.96 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.01 0.37 4.29 -27.88 -0.12 0.25 16 10 C -0.58 -10.84 6.01 37.16 0.22 -10.62 16 11 S 2.59 43.88 5.46 -107.50 -0.59 43.29 16 12 O -0.97 -19.06 17.49 -57.54 -1.01 -20.07 16 13 O -0.97 -19.30 18.08 -57.54 -1.04 -20.34 16 14 N -1.13 -13.20 5.70 -10.62 -0.06 -13.26 16 15 C 0.13 1.28 5.43 -4.05 -0.02 1.25 16 16 C -0.12 -1.01 2.58 -88.68 -0.23 -1.24 16 17 H 0.10 0.77 7.84 -51.92 -0.41 0.37 16 18 C -0.15 -1.22 6.44 -24.48 -0.16 -1.37 16 19 C 0.05 0.37 7.78 38.19 0.30 0.67 16 20 O -0.37 -3.72 10.29 -35.23 -0.36 -4.08 16 21 C 0.13 1.17 3.34 -27.16 -0.09 1.08 16 22 H 0.10 0.85 7.71 -51.93 -0.40 0.45 16 23 C -0.10 -0.93 4.85 -104.62 -0.51 -1.44 16 24 C -0.10 -0.91 9.36 -39.58 -0.37 -1.28 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 27 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 28 C -0.11 -1.01 9.68 -39.59 -0.38 -1.40 16 29 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 30 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 31 H 0.02 0.63 8.01 -51.93 -0.42 0.21 16 32 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 33 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 34 H 0.41 4.00 8.62 -34.46 -0.30 3.70 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.91 7.66 -51.92 -0.40 0.51 16 37 H 0.09 0.78 8.02 -51.93 -0.42 0.37 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.39 8.09 -51.92 -0.42 -0.03 16 41 H 0.12 1.00 7.68 -52.49 -0.40 0.59 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.13 1.00 8.05 -52.49 -0.42 0.58 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -36.26 385.89 -11.41 -47.67 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.87 Total: 3.15 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: -2.96 Total: -34.97 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.70 Total: -40.01 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -2.41 Total: -44.49 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.54 kcal Atomic # 16 Polarization: 43.88 SS G_CDS: -0.59 Total: 43.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.26 -11.41 -47.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192270050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.650 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds