Wall clock time and date at job start Tue Mar 31 2020 22:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42106 * 110.54100 * 291.62280 * 11 10 9 13 13 O 1.42100 * 110.54266 * 68.37418 * 11 10 9 14 14 N 1.65599 * 104.44810 * 180.02562 * 11 10 9 15 15 C 1.46494 * 120.00309 * 64.99866 * 14 11 10 16 16 C 1.52995 * 109.47327 * 164.99823 * 15 14 11 17 17 H 1.09008 * 110.75081 * 57.02068 * 16 15 14 18 18 C 1.55301 * 110.84900 * 293.55081 * 16 15 14 19 19 C 1.54950 * 100.94306 * 207.67666 * 18 16 15 20 20 O 1.43638 * 105.13668 * 36.43844 * 19 18 16 21 21 C 1.43240 * 109.97343 * 335.57770 * 20 19 18 22 22 H 1.09001 * 109.83055 * 121.22742 * 21 20 19 23 23 C 1.50703 * 109.83085 * 242.19714 * 21 20 19 24 24 C 1.38236 * 119.99959 * 37.85728 * 23 21 20 25 25 C 1.38243 * 119.99946 * 179.76696 * 24 23 21 26 26 C 1.38236 * 119.99617 * 0.48694 * 25 24 23 27 27 C 1.38235 * 119.99967 * 359.78837 * 26 25 24 28 28 C 1.38232 * 120.00262 * 359.96044 * 27 26 25 29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 31 31 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 0.97002 * 119.99347 * 244.99779 * 14 11 10 35 35 H 1.08995 * 109.47363 * 285.00275 * 15 14 11 36 36 H 1.09007 * 109.47132 * 45.00047 * 15 14 11 37 37 H 1.09002 * 111.12326 * 325.58769 * 18 16 15 38 38 H 1.09002 * 111.13133 * 89.75865 * 18 16 15 39 39 H 1.08997 * 110.31581 * 155.35674 * 19 18 16 40 40 H 1.09008 * 110.30607 * 277.52923 * 19 18 16 41 41 H 1.07996 * 119.99884 * 359.97438 * 24 23 21 42 42 H 1.07999 * 119.99723 * 180.24819 * 25 24 23 43 43 H 1.07996 * 119.99858 * 179.76696 * 26 25 24 44 44 H 1.08002 * 119.99842 * 179.97438 * 27 26 25 45 45 H 1.07999 * 119.99814 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2330 -0.0002 12 8 0.6640 -5.4200 1.2366 13 8 0.6648 -5.4193 -1.2375 14 7 2.5206 -6.3927 0.0006 15 6 3.4182 -6.5229 1.1510 16 6 4.1492 -7.8649 1.0781 17 1 4.6955 -7.9567 0.1392 18 6 3.1564 -9.0456 1.2574 19 6 4.0893 -10.1250 1.8622 20 8 4.9898 -9.4052 2.7190 21 6 5.0923 -8.0433 2.2872 22 1 4.7895 -7.3758 3.0940 23 6 6.5111 -7.7422 1.8778 24 6 7.2560 -8.6978 1.2123 25 6 8.5558 -8.4199 0.8324 26 6 9.1140 -7.1900 1.1270 27 6 8.3709 -6.2365 1.7975 28 6 7.0694 -6.5125 2.1727 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5566 0.8903 31 1 0.6247 -2.5571 -0.8897 32 1 2.8720 -3.6043 -0.8894 33 1 2.8720 -3.6043 0.8906 34 1 2.6187 -6.9856 -0.7608 35 1 4.1458 -5.7116 1.1378 36 1 2.8374 -6.4751 2.0722 37 1 2.3567 -8.7846 1.9506 38 1 2.7524 -9.3685 0.2979 39 1 3.5101 -10.8444 2.4410 40 1 4.6431 -10.6322 1.0720 41 1 6.8214 -9.6602 0.9862 42 1 9.1364 -9.1651 0.3090 43 1 10.1307 -6.9742 0.8336 44 1 8.8071 -5.2758 2.0280 45 1 6.4891 -5.7677 2.6969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192270050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:04 Heat of formation + Delta-G solvation = -136.506191 kcal Electronic energy + Delta-G solvation = -27196.915024 eV Core-core repulsion = 23304.546006 eV Total energy + Delta-G solvation = -3892.369018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30082 -39.32767 -38.25961 -37.13953 -36.73170 -36.29699 -33.20602 -32.98584 -32.54009 -31.74055 -29.49777 -27.10506 -26.24342 -24.04555 -23.85645 -23.41753 -22.25963 -21.59490 -20.37641 -19.33124 -18.45617 -18.22141 -17.78150 -17.32309 -17.09704 -16.72816 -16.19026 -15.91508 -15.65955 -15.60640 -15.51719 -15.16495 -15.00654 -14.88197 -14.24525 -14.07004 -13.98183 -13.88028 -13.51141 -13.45668 -13.29574 -13.18666 -12.85688 -12.78475 -12.47363 -12.42572 -12.29505 -12.13850 -12.03136 -12.02547 -11.89897 -11.84252 -11.69397 -10.85124 -10.62185 -10.61966 -10.39291 -9.79913 -9.60829 -8.74993 -6.49218 -0.77888 0.40917 0.52303 1.53408 1.61813 1.74091 1.80957 2.54548 2.69282 2.70920 3.05916 3.09449 3.16592 3.41279 3.54244 3.62629 3.86729 3.99534 4.01250 4.04013 4.17729 4.22570 4.25687 4.26767 4.34023 4.42611 4.53435 4.64352 4.66151 4.69349 4.77463 4.87269 4.91716 4.98178 5.01864 5.06247 5.10339 5.18045 5.22231 5.58947 5.64838 5.67611 5.81367 6.00996 6.05383 6.07953 6.12500 6.44972 7.33747 8.64824 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.003043 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.290834 B = 9200.718714 C =11136.487546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.042 4.042 3 Si 1.121 2.879 4 H -0.286 1.286 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.614 4.614 8 H 0.068 0.932 9 C 0.003 3.997 10 C -0.586 4.586 11 S 2.625 3.375 12 O -0.994 6.994 13 O -0.997 6.997 14 N -1.103 6.103 15 C 0.116 3.884 16 C -0.109 4.109 17 H 0.106 0.894 18 C -0.154 4.154 19 C 0.046 3.954 20 O -0.387 6.387 21 C 0.128 3.872 22 H 0.094 0.906 23 C -0.108 4.108 24 C -0.110 4.110 25 C -0.130 4.130 26 C -0.128 4.128 27 C -0.129 4.129 28 C -0.124 4.124 29 H 0.255 0.745 30 H 0.004 0.996 31 H 0.002 0.998 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.426 0.574 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.435 -20.785 2.366 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.239 4.239 3 Si 0.941 3.059 4 H -0.211 1.211 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.652 4.652 8 H 0.086 0.914 9 C -0.035 4.035 10 C -0.717 4.717 11 S 2.721 3.279 12 O -0.984 6.984 13 O -0.988 6.988 14 N -0.865 5.865 15 C -0.010 4.010 16 C -0.129 4.129 17 H 0.124 0.876 18 C -0.192 4.192 19 C -0.029 4.029 20 O -0.307 6.307 21 C 0.069 3.931 22 H 0.112 0.888 23 C -0.109 4.109 24 C -0.128 4.128 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.147 4.147 28 C -0.142 4.142 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.021 0.979 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.263 0.737 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.143 0.857 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.384 -19.345 2.705 26.149 hybrid contribution 0.179 -1.475 -0.478 1.561 sum 17.563 -20.821 2.227 27.330 Atomic orbital electron populations 1.70926 1.08194 1.29947 1.48251 1.27629 0.96548 1.07306 0.92456 0.82899 0.74103 0.70525 0.78368 1.21137 1.18841 1.18990 1.22338 0.95249 0.91909 1.55732 0.91398 1.18988 0.94348 0.94560 0.95647 1.30277 1.12610 1.16424 1.12421 1.04308 0.74583 0.76286 0.72722 1.93511 1.72610 1.85300 1.46948 1.93514 1.73021 1.85724 1.46493 1.55172 1.52296 1.50617 1.28429 1.21473 0.92831 0.98470 0.88254 1.22884 0.95823 0.94450 0.99785 0.87560 1.23416 0.98069 0.94328 1.03350 1.23565 0.90586 0.94677 0.94115 1.88470 1.66614 1.21434 1.54144 1.21542 0.90899 0.84659 0.95983 0.88844 1.20204 0.96065 0.94994 0.99589 1.21085 0.94717 0.99120 0.97899 1.21437 0.95425 0.97689 1.00209 1.21490 1.00836 0.93773 0.98441 1.21423 0.94368 1.00315 0.98612 1.21237 0.96026 0.96628 1.00286 0.93572 0.97740 0.97934 0.84025 0.83931 0.73684 0.89568 0.90178 0.90484 0.88106 0.88549 0.90806 0.85675 0.84327 0.84289 0.84531 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.35 13.65 21.45 0.29 -58.06 16 2 C -0.04 -2.39 5.46 84.65 0.46 -1.93 16 3 Si 1.12 48.69 29.90 68.60 2.05 50.74 16 4 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.61 -33.93 9.11 25.60 0.23 -33.70 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.00 0.17 4.29 29.85 0.13 0.30 16 10 C -0.59 -21.21 6.01 71.98 0.43 -20.78 16 11 S 2.63 87.10 5.46 -56.49 -0.31 86.79 16 12 O -0.99 -39.13 17.49 -127.65 -2.23 -41.36 16 13 O -1.00 -39.54 18.08 -127.65 -2.31 -41.84 16 14 N -1.10 -23.68 5.70 -187.50 -1.07 -24.75 16 15 C 0.12 2.12 5.43 86.38 0.47 2.59 16 16 C -0.11 -1.64 2.58 -9.54 -0.02 -1.67 16 17 H 0.11 1.42 7.84 -2.38 -0.02 1.40 16 18 C -0.15 -2.17 6.44 32.05 0.21 -1.96 16 19 C 0.05 0.63 7.78 72.65 0.56 1.19 16 20 O -0.39 -7.32 10.29 -148.98 -1.53 -8.85 16 21 C 0.13 2.18 3.34 30.32 0.10 2.28 16 22 H 0.09 1.58 7.71 -2.39 -0.02 1.56 16 23 C -0.11 -1.91 4.85 -19.87 -0.10 -2.01 16 24 C -0.11 -1.83 9.36 22.27 0.21 -1.63 16 25 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 26 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 27 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 28 C -0.12 -2.12 9.68 22.27 0.22 -1.91 16 29 H 0.25 16.16 7.22 -92.71 -0.67 15.49 16 30 H 0.00 0.24 8.01 -2.39 -0.02 0.22 16 31 H 0.00 0.13 8.01 -2.38 -0.02 0.11 16 32 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 33 H 0.14 4.45 8.14 -2.39 -0.02 4.44 16 34 H 0.43 7.19 8.62 -96.75 -0.83 6.36 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.60 7.66 -2.38 -0.02 1.58 16 37 H 0.08 1.27 8.02 -2.39 -0.02 1.25 16 38 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 0.79 8.09 -2.38 -0.02 0.77 16 41 H 0.13 1.86 7.68 -2.91 -0.02 1.84 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.13 1.95 8.05 -2.91 -0.02 1.92 16 Total: -1.00 -78.87 385.89 -1.29 -80.16 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.25 Total: 21.56 kcal Atomic # 6 Polarization: -67.96 SS G_CDS: 3.57 Total: -64.39 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -0.78 Total: -82.81 kcal Atomic # 8 Polarization: -85.99 SS G_CDS: -6.07 Total: -92.06 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.05 Total: 50.74 kcal Atomic # 16 Polarization: 87.10 SS G_CDS: -0.31 Total: 86.79 kcal Total: -78.87 -1.29 -80.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192270050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.346 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds