Wall clock time and date at job start Tue Mar 31 2020 22:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00176 * 2 1 4 4 H 1.48502 * 109.46867 * 240.00102 * 3 2 1 5 5 H 1.48490 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46865 * 120.00260 * 3 2 1 7 7 C 1.37878 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47016 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47080 * 179.97438 * 11 10 9 13 13 S 1.65604 * 120.00101 * 164.99653 * 12 11 10 14 14 O 1.42100 * 104.27705 * 308.93216 * 13 12 11 15 15 O 1.42103 * 104.27448 * 181.07328 * 13 12 11 16 16 C 1.81404 * 104.44654 * 65.00419 * 13 12 11 17 17 C 1.53001 * 109.47029 * 179.97438 * 16 13 12 18 18 C 1.50694 * 109.47020 * 179.97438 * 17 16 13 19 19 C 1.38291 * 120.11946 * 90.00140 * 18 17 16 20 20 C 1.37929 * 120.35446 * 180.17130 * 19 18 17 21 21 C 1.39289 * 120.24278 * 0.06555 * 20 19 18 22 22 C 1.38981 * 118.85498 * 359.58943 * 21 20 19 23 23 C 1.37660 * 120.77699 * 0.54611 * 22 21 20 24 24 C 1.51649 * 106.97907 * 180.57567 * 22 21 20 25 25 C 1.54713 * 101.93881 * 15.71381 * 24 22 21 26 26 O 1.36126 * 129.87617 * 179.56466 * 21 20 19 27 27 H 0.96998 * 119.99598 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47441 * 60.00469 * 9 7 2 29 29 H 1.08991 * 109.47359 * 300.00109 * 9 7 2 30 30 H 1.08997 * 109.47161 * 60.00339 * 10 9 7 31 31 H 1.09001 * 109.46964 * 300.00167 * 10 9 7 32 32 H 1.09004 * 109.47728 * 60.00197 * 11 10 9 33 33 H 1.09001 * 109.47187 * 299.99781 * 11 10 9 34 34 H 0.96996 * 119.99715 * 345.00200 * 12 11 10 35 35 H 1.09001 * 109.47079 * 60.00020 * 16 13 12 36 36 H 1.09002 * 109.46938 * 299.99949 * 16 13 12 37 37 H 1.09002 * 109.46814 * 59.99659 * 17 16 13 38 38 H 1.09006 * 109.46949 * 300.00186 * 17 16 13 39 39 H 1.08007 * 119.81963 * 0.19443 * 19 18 17 40 40 H 1.07996 * 119.87833 * 180.02562 * 20 19 18 41 41 H 1.08003 * 119.98294 * 179.61345 * 23 22 21 42 42 H 1.09002 * 110.94508 * 257.54041 * 24 22 21 43 43 H 1.08997 * 110.93949 * 133.88365 * 24 22 21 44 44 H 1.09003 * 110.74698 * 92.94680 * 25 24 22 45 45 H 1.09001 * 110.74689 * 216.11069 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1007 -0.0018 13 16 1.9172 -7.6304 0.3687 14 8 1.2144 -7.4764 1.5941 15 8 3.0936 -8.4239 0.2935 16 6 0.7729 -8.0598 -0.9718 17 6 0.2230 -9.4688 -0.7411 18 6 -0.7281 -9.8253 -1.8543 19 6 -0.2576 -10.4472 -2.9965 20 6 -1.1233 -10.7724 -4.0198 21 6 -2.4799 -10.4758 -3.9121 22 6 -2.9416 -9.8574 -2.7563 23 6 -2.0749 -9.5314 -1.7376 24 6 -4.4385 -9.6764 -2.9185 25 6 -4.7504 -10.6301 -4.0961 26 8 -3.4944 -10.6978 -4.7923 27 1 -0.4849 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8718 -3.6045 0.8895 31 1 2.8719 -3.6044 -0.8905 32 1 0.8537 -5.0446 -0.8914 33 1 0.8532 -5.0451 0.8886 34 1 3.3640 -5.9419 -0.2191 35 1 1.3012 -8.0279 -1.9247 36 1 -0.0508 -7.3462 -0.9889 37 1 -0.3051 -9.5012 0.2119 38 1 1.0470 -10.1822 -0.7242 39 1 0.7932 -10.6796 -3.0874 40 1 -0.7477 -11.2583 -4.9082 41 1 -2.4466 -9.0454 -0.8476 42 1 -4.6805 -8.6456 -3.1773 43 1 -4.9680 -9.9843 -2.0169 44 1 -5.0421 -11.6142 -3.7291 45 1 -5.5277 -10.2123 -4.7359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193446396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:39 Heat of formation + Delta-G solvation = -125.256640 kcal Electronic energy + Delta-G solvation = -26026.867726 eV Core-core repulsion = 22134.986525 eV Total energy + Delta-G solvation = -3891.881201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.04062 -38.99266 -38.19287 -37.35004 -36.99602 -35.14368 -34.80362 -33.61914 -32.60504 -30.38561 -29.96901 -28.17279 -25.50543 -24.74354 -24.21615 -22.89421 -22.23448 -21.76114 -20.21048 -18.59168 -18.54065 -18.35422 -17.74190 -17.48779 -17.15224 -17.07622 -16.50342 -16.19175 -16.07693 -15.64428 -15.14130 -15.05159 -14.34910 -14.32194 -14.21953 -14.12651 -14.02344 -13.81015 -13.70164 -13.22236 -13.20190 -13.14771 -13.07454 -13.00779 -12.75413 -12.64047 -12.51899 -12.37984 -12.30858 -11.81570 -11.71276 -11.66190 -11.50560 -11.36491 -11.13830 -10.52104 -10.32413 -9.88235 -9.04028 -8.18130 -6.28129 -0.72204 0.26859 0.33757 1.42098 1.44286 1.52062 1.77000 2.30913 2.42874 2.61800 2.84631 3.15687 3.26145 3.44105 3.62388 3.70672 3.80789 3.90274 3.96084 4.07736 4.13464 4.25608 4.29998 4.40240 4.44093 4.52222 4.54399 4.65113 4.68447 4.75893 4.85095 4.86565 4.92507 5.01770 5.11687 5.21883 5.24732 5.26341 5.38976 5.55722 5.56343 5.63667 5.77970 5.88471 6.12510 6.19232 6.27602 6.88847 7.40779 8.93310 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010848 B = 0.002260 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.606303 B =12388.997664 C =14293.198698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.021 3.979 10 C -0.106 4.106 11 C 0.118 3.882 12 N -1.115 6.115 13 S 2.623 3.377 14 O -0.995 6.995 15 O -0.988 6.988 16 C -0.607 4.607 17 C -0.073 4.073 18 C -0.108 4.108 19 C -0.083 4.083 20 C -0.147 4.147 21 C 0.080 3.920 22 C -0.185 4.185 23 C -0.076 4.076 24 C -0.111 4.111 25 C 0.046 3.954 26 O -0.328 6.328 27 H 0.263 0.737 28 H 0.003 0.997 29 H -0.006 1.006 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.422 0.578 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.156 0.844 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 -25.253 -7.952 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.017 4.017 10 C -0.145 4.145 11 C -0.008 4.008 12 N -0.875 5.875 13 S 2.719 3.281 14 O -0.985 6.985 15 O -0.978 6.978 16 C -0.739 4.739 17 C -0.112 4.112 18 C -0.109 4.109 19 C -0.100 4.100 20 C -0.166 4.166 21 C 0.035 3.965 22 C -0.186 4.186 23 C -0.094 4.094 24 C -0.148 4.148 25 C -0.028 4.028 26 O -0.243 6.243 27 H 0.072 0.928 28 H 0.021 0.979 29 H 0.013 0.987 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.258 0.742 35 H 0.176 0.824 36 H 0.165 0.835 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.173 0.827 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.244 -25.706 -7.357 27.458 hybrid contribution 0.077 1.461 -0.525 1.554 sum -6.167 -24.246 -7.882 26.230 Atomic orbital electron populations 1.70075 1.07658 1.27769 1.51702 1.25938 0.95762 1.03211 0.94897 0.85553 0.78301 0.78406 0.79100 1.19136 1.20995 1.19460 1.21682 0.93605 0.92440 1.50430 0.92167 1.18996 0.94505 0.92642 0.95534 1.21618 0.98548 0.92704 1.01647 1.21370 0.91368 0.85949 1.02153 1.55363 1.19585 1.23873 1.88691 1.04417 0.74961 0.72425 0.76277 1.93560 1.76592 1.85348 1.43010 1.93554 1.46945 1.69216 1.88103 1.30519 1.16859 1.06571 1.19944 1.20350 0.99509 0.92960 0.98373 1.19546 0.93475 1.01558 0.96321 1.21088 1.00580 0.96713 0.91661 1.20513 0.89648 1.04795 1.01612 1.19947 0.90741 0.96404 0.89450 1.21088 0.97521 1.03790 0.96221 1.20463 0.92212 0.98422 0.98333 1.21902 0.90754 1.01711 1.00461 1.24103 0.84411 1.00698 0.93558 1.86781 1.15347 1.87992 1.34134 0.92809 0.97851 0.98724 0.92817 0.91410 0.90012 0.91445 0.74207 0.82364 0.83539 0.88650 0.87793 0.82670 0.84282 0.84346 0.88686 0.87260 0.89320 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.06 4.97 29.85 0.15 1.20 16 10 C -0.11 -3.96 5.29 30.59 0.16 -3.80 16 11 C 0.12 3.45 6.13 86.38 0.53 3.98 16 12 N -1.12 -26.67 5.89 -187.48 -1.10 -27.77 16 13 S 2.62 59.18 5.46 -56.49 -0.31 58.87 16 14 O -0.99 -30.47 17.50 -127.65 -2.23 -32.70 16 15 O -0.99 -26.76 18.08 -127.65 -2.31 -29.07 16 16 C -0.61 -9.04 6.05 71.98 0.44 -8.61 16 17 C -0.07 -1.05 5.36 29.85 0.16 -0.89 16 18 C -0.11 -1.73 5.14 -19.83 -0.10 -1.84 16 19 C -0.08 -1.26 9.68 22.21 0.21 -1.04 16 20 C -0.15 -2.57 10.06 22.45 0.23 -2.35 16 21 C 0.08 1.58 7.04 22.70 0.16 1.74 16 22 C -0.19 -3.32 6.27 -19.52 -0.12 -3.45 16 23 C -0.08 -1.30 9.69 22.16 0.21 -1.09 16 24 C -0.11 -1.38 7.11 30.74 0.22 -1.16 16 25 C 0.05 0.54 8.01 72.57 0.58 1.12 16 26 O -0.33 -6.42 11.10 -94.99 -1.05 -7.48 16 27 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.07 2.12 7.70 -2.39 -0.02 2.10 16 34 H 0.42 9.05 8.62 -96.75 -0.83 8.21 16 35 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16 38 H 0.10 1.19 8.09 -2.38 -0.02 1.17 16 39 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -77.38 389.83 -1.02 -78.41 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.15 Total: 15.00 kcal Atomic # 6 Polarization: -49.08 SS G_CDS: 3.52 Total: -45.55 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -0.82 Total: -83.09 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -5.60 Total: -69.24 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 59.18 SS G_CDS: -0.31 Total: 58.87 kcal Total: -77.38 -1.02 -78.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193446396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.851 kcal (2) G-P(sol) polarization free energy of solvation -77.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds