Wall clock time and date at job start Tue Mar 31 2020 22:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99592 * 2 1 4 4 H 1.48496 * 109.47197 * 269.99941 * 3 2 1 5 5 H 1.48505 * 109.47489 * 30.00257 * 3 2 1 6 6 H 1.48503 * 109.47231 * 149.99986 * 3 2 1 7 7 C 1.37872 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00403 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47349 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47166 * 180.02562 * 10 9 7 12 12 O 1.42104 * 110.54078 * 68.37376 * 11 10 9 13 13 O 1.42098 * 110.54125 * 291.62473 * 11 10 9 14 14 N 1.65597 * 104.45229 * 179.97438 * 11 10 9 15 15 C 1.46497 * 120.00011 * 89.99475 * 14 11 10 16 16 C 1.52997 * 109.47635 * 270.49081 * 15 14 11 17 17 O 1.42904 * 109.47214 * 69.38291 * 16 15 14 18 18 C 1.46503 * 120.00266 * 270.00308 * 14 11 10 19 19 H 1.09008 * 110.26581 * 9.22949 * 18 14 11 20 20 C 1.54347 * 110.30588 * 131.30281 * 18 14 11 21 21 C 1.54495 * 102.32318 * 145.20896 * 20 18 14 22 22 C 1.51378 * 105.21536 * 333.77088 * 21 20 18 23 23 C 1.38493 * 130.38882 * 197.11649 * 22 21 20 24 24 C 1.38107 * 120.21056 * 180.02562 * 23 22 21 25 25 C 1.38252 * 119.93905 * 359.97438 * 24 23 22 26 26 C 1.38105 * 119.93388 * 0.02562 * 25 24 23 27 27 C 1.38218 * 109.75848 * 17.12150 * 22 21 20 28 28 H 0.97000 * 120.00326 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46662 * 60.00143 * 9 7 2 30 30 H 1.09000 * 109.47552 * 300.00724 * 9 7 2 31 31 H 1.08991 * 109.47307 * 60.00155 * 10 9 7 32 32 H 1.09008 * 109.47231 * 299.99871 * 10 9 7 33 33 H 1.09004 * 109.46964 * 150.49080 * 15 14 11 34 34 H 1.08998 * 109.46862 * 30.48888 * 15 14 11 35 35 H 1.09006 * 109.46988 * 309.38844 * 16 15 14 36 36 H 1.08999 * 109.47209 * 189.38574 * 16 15 14 37 37 H 0.96704 * 113.99860 * 180.02562 * 17 16 15 38 38 H 1.08993 * 110.82346 * 263.49585 * 20 18 14 39 39 H 1.09002 * 110.81916 * 27.05004 * 20 18 14 40 40 H 1.08990 * 110.33881 * 214.80622 * 21 20 18 41 41 H 1.08996 * 110.22276 * 92.67849 * 21 20 18 42 42 H 1.07997 * 119.89287 * 359.97438 * 23 22 21 43 43 H 1.08004 * 120.02710 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.03220 * 179.97438 * 25 24 23 45 45 H 1.07992 * 119.89358 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 16 5.8356 -2.6364 0.0001 12 8 6.3342 -2.1459 1.2371 13 8 6.3342 -2.1461 -1.2369 14 7 6.2490 -4.2400 0.0010 15 6 6.4317 -4.9499 -1.2673 16 6 5.0960 -5.5468 -1.7149 17 8 4.2087 -4.4944 -2.0987 18 6 6.4317 -4.9487 1.2701 19 1 6.1017 -4.3256 2.1014 20 6 5.6520 -6.2807 1.2568 21 6 6.5723 -7.2097 2.0796 22 6 7.9641 -6.6376 1.9147 23 6 9.2031 -7.2086 2.1530 24 6 10.3571 -6.4841 1.9277 25 6 10.2763 -5.1848 1.4624 26 6 9.0417 -4.6136 1.2243 27 6 7.8833 -5.3385 1.4497 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6796 0.8895 30 1 3.8746 -0.6807 -0.8904 31 1 3.6580 -3.1505 -0.8896 32 1 3.6586 -3.1501 0.8904 33 1 7.1606 -5.7495 -1.1344 34 1 6.7905 -4.2535 -2.0251 35 1 4.6562 -6.1109 -0.8923 36 1 5.2608 -6.2107 -2.5635 37 1 3.3402 -4.8004 -2.3942 38 1 4.6819 -6.1667 1.7403 39 1 5.5375 -6.6524 0.2385 40 1 6.5325 -8.2260 1.6880 41 1 6.2798 -7.1962 3.1295 42 1 9.2671 -8.2235 2.5168 43 1 11.3218 -6.9323 2.1149 44 1 11.1777 -4.6167 1.2862 45 1 8.9793 -3.5987 0.8605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269756048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:10 Heat of formation + Delta-G solvation = -86.761021 kcal Electronic energy + Delta-G solvation = -28690.605236 eV Core-core repulsion = 24800.393330 eV Total energy + Delta-G solvation = -3890.211906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50967 -37.78267 -36.71028 -36.09409 -35.43797 -34.13540 -33.76725 -31.36204 -31.24579 -29.22864 -29.07120 -26.35815 -25.78823 -22.92138 -22.61052 -21.24136 -21.07669 -20.53146 -18.71685 -17.95210 -17.47849 -16.94717 -16.63457 -15.87162 -15.49016 -15.33346 -15.11941 -15.02856 -14.84844 -14.25525 -14.21742 -13.66639 -13.38812 -13.36208 -13.14999 -12.83730 -12.68928 -12.43549 -12.33141 -12.12348 -11.83818 -11.73007 -11.56248 -11.47043 -11.37390 -11.24566 -11.09755 -11.07638 -10.90858 -10.83331 -10.34105 -10.09135 -9.80361 -9.61039 -9.33114 -8.96570 -8.84502 -8.68525 -8.60420 -6.11467 -4.11155 0.78396 1.21056 1.27299 2.95875 3.30762 3.37599 3.43173 3.63095 4.10291 4.17810 4.30147 4.41278 4.43325 4.58171 4.73319 4.81329 4.87970 4.94056 4.97196 5.06840 5.08207 5.16784 5.21777 5.30383 5.37147 5.48331 5.49564 5.59394 5.62912 5.72185 5.75779 5.85428 5.90066 5.98111 6.01349 6.13160 6.31347 6.39530 6.46279 6.55248 6.71397 6.86417 6.99480 7.09835 7.61815 7.62545 8.43601 8.90183 9.49427 11.01052 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.003555 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.001084 B = 7874.193464 C = 8289.633613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.868 3.132 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.511 4.511 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.585 4.585 11 S 2.584 3.416 12 O -0.972 6.972 13 O -0.962 6.962 14 N -0.991 5.991 15 C 0.118 3.882 16 C 0.041 3.959 17 O -0.565 6.565 18 C 0.188 3.812 19 H 0.113 0.887 20 C -0.140 4.140 21 C -0.080 4.080 22 C -0.093 4.093 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.088 4.088 27 C -0.100 4.100 28 H 0.265 0.735 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.156 0.844 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.386 0.614 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.111 -19.185 1.240 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.694 3.306 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.551 4.551 8 H 0.096 0.904 9 C -0.045 4.045 10 C -0.718 4.718 11 S 2.684 3.316 12 O -0.962 6.962 13 O -0.952 6.952 14 N -0.824 5.824 15 C -0.008 4.008 16 C -0.038 4.038 17 O -0.373 6.373 18 C 0.082 3.918 19 H 0.131 0.869 20 C -0.179 4.179 21 C -0.118 4.118 22 C -0.094 4.094 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.106 4.106 27 C -0.102 4.102 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.174 0.826 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.235 0.765 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.131 -17.976 1.386 24.870 hybrid contribution -0.608 0.171 -0.094 0.638 sum 16.523 -17.805 1.293 24.325 Atomic orbital electron populations 1.69881 1.06160 1.27125 1.50537 1.24975 0.94796 0.99097 0.94299 0.86949 0.80725 0.83813 0.79119 1.19688 1.20829 1.18691 1.20843 0.87862 0.94751 1.51596 0.90437 1.19383 0.99763 0.87986 0.97381 1.30494 1.20397 1.08733 1.12203 1.05817 0.79614 0.72273 0.73896 1.93532 1.79387 1.77762 1.45569 1.93512 1.79135 1.77488 1.45079 1.57718 1.84901 1.29875 1.09907 1.21331 0.95558 0.98603 0.85288 1.23089 0.91722 0.90225 0.98802 1.86482 1.28625 1.34476 1.87677 1.20386 0.90840 0.94284 0.86302 0.86899 1.23033 0.98830 0.94034 1.01979 1.21063 0.90434 0.99237 1.01045 1.20541 0.94827 0.94821 0.99187 1.20568 0.91219 0.99858 1.01378 1.21031 0.98032 0.94668 0.99897 1.21063 0.97320 0.95538 1.00215 1.20699 0.91362 0.99819 0.98751 1.20784 0.95136 0.94623 0.99617 0.92496 0.95536 0.95623 0.82624 0.86581 0.89015 0.88130 0.92051 0.92744 0.76512 0.89502 0.89044 0.90497 0.89837 0.86365 0.86043 0.85919 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.51 -14.47 9.66 -34.44 -0.33 -14.80 16 8 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 9 C -0.01 -0.14 4.05 -27.89 -0.11 -0.25 16 10 C -0.58 -11.43 5.87 37.16 0.22 -11.21 16 11 S 2.58 48.04 5.13 -107.50 -0.55 47.49 16 12 O -0.97 -20.22 16.71 -57.54 -0.96 -21.18 16 13 O -0.96 -20.30 16.58 -57.54 -0.95 -21.26 16 14 N -0.99 -13.60 2.66 -107.42 -0.29 -13.88 16 15 C 0.12 1.35 5.20 -4.04 -0.02 1.33 16 16 C 0.04 0.38 6.95 37.16 0.26 0.64 16 17 O -0.57 -6.87 9.92 -35.23 -0.35 -7.22 16 18 C 0.19 2.30 3.09 -68.05 -0.21 2.09 16 19 H 0.11 1.50 7.15 -51.92 -0.37 1.12 16 20 C -0.14 -1.23 6.15 -25.24 -0.16 -1.39 16 21 C -0.08 -0.64 6.77 -26.77 -0.18 -0.82 16 22 C -0.09 -0.95 6.14 -104.20 -0.64 -1.59 16 23 C -0.11 -1.03 10.04 -39.54 -0.40 -1.43 16 24 C -0.12 -1.09 10.05 -39.62 -0.40 -1.48 16 25 C -0.12 -1.30 10.05 -39.62 -0.40 -1.70 16 26 C -0.09 -1.12 10.00 -39.53 -0.40 -1.52 16 27 C -0.10 -1.22 5.15 -104.20 -0.54 -1.75 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 30 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 31 H 0.16 2.84 4.69 -51.93 -0.24 2.60 16 32 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 33 H 0.09 0.87 7.59 -51.93 -0.39 0.47 16 34 H 0.10 1.33 6.92 -51.93 -0.36 0.97 16 35 H 0.06 0.49 5.28 -51.93 -0.27 0.22 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.39 3.24 9.12 45.56 0.42 3.66 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.70 4.34 -51.93 -0.23 0.48 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -36.32 366.91 -10.48 -46.80 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.61 Total: 4.88 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: -3.40 Total: -31.91 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.49 Total: -40.45 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -2.27 Total: -49.65 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Atomic # 16 Polarization: 48.04 SS G_CDS: -0.55 Total: 47.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.32 -10.48 -46.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269756048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.962 kcal (2) G-P(sol) polarization free energy of solvation -36.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds