Wall clock time and date at job start Tue Mar 31 2020 22:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99592 * 2 1 4 4 H 1.48496 * 109.47197 * 269.99941 * 3 2 1 5 5 H 1.48505 * 109.47489 * 30.00257 * 3 2 1 6 6 H 1.48503 * 109.47231 * 149.99986 * 3 2 1 7 7 C 1.37872 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00403 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47349 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47166 * 180.02562 * 10 9 7 12 12 O 1.42104 * 110.54078 * 68.37376 * 11 10 9 13 13 O 1.42098 * 110.54125 * 291.62473 * 11 10 9 14 14 N 1.65597 * 104.45229 * 179.97438 * 11 10 9 15 15 C 1.46497 * 120.00011 * 89.99475 * 14 11 10 16 16 C 1.52997 * 109.47635 * 270.49081 * 15 14 11 17 17 O 1.42904 * 109.47214 * 69.38291 * 16 15 14 18 18 C 1.46503 * 120.00266 * 270.00308 * 14 11 10 19 19 H 1.09008 * 110.26581 * 9.22949 * 18 14 11 20 20 C 1.54347 * 110.30588 * 131.30281 * 18 14 11 21 21 C 1.54495 * 102.32318 * 145.20896 * 20 18 14 22 22 C 1.51378 * 105.21536 * 333.77088 * 21 20 18 23 23 C 1.38493 * 130.38882 * 197.11649 * 22 21 20 24 24 C 1.38107 * 120.21056 * 180.02562 * 23 22 21 25 25 C 1.38252 * 119.93905 * 359.97438 * 24 23 22 26 26 C 1.38105 * 119.93388 * 0.02562 * 25 24 23 27 27 C 1.38218 * 109.75848 * 17.12150 * 22 21 20 28 28 H 0.97000 * 120.00326 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46662 * 60.00143 * 9 7 2 30 30 H 1.09000 * 109.47552 * 300.00724 * 9 7 2 31 31 H 1.08991 * 109.47307 * 60.00155 * 10 9 7 32 32 H 1.09008 * 109.47231 * 299.99871 * 10 9 7 33 33 H 1.09004 * 109.46964 * 150.49080 * 15 14 11 34 34 H 1.08998 * 109.46862 * 30.48888 * 15 14 11 35 35 H 1.09006 * 109.46988 * 309.38844 * 16 15 14 36 36 H 1.08999 * 109.47209 * 189.38574 * 16 15 14 37 37 H 0.96704 * 113.99860 * 180.02562 * 17 16 15 38 38 H 1.08993 * 110.82346 * 263.49585 * 20 18 14 39 39 H 1.09002 * 110.81916 * 27.05004 * 20 18 14 40 40 H 1.08990 * 110.33881 * 214.80622 * 21 20 18 41 41 H 1.08996 * 110.22276 * 92.67849 * 21 20 18 42 42 H 1.07997 * 119.89287 * 359.97438 * 23 22 21 43 43 H 1.08004 * 120.02710 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.03220 * 179.97438 * 25 24 23 45 45 H 1.07992 * 119.89358 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 16 5.8356 -2.6364 0.0001 12 8 6.3342 -2.1459 1.2371 13 8 6.3342 -2.1461 -1.2369 14 7 6.2490 -4.2400 0.0010 15 6 6.4317 -4.9499 -1.2673 16 6 5.0960 -5.5468 -1.7149 17 8 4.2087 -4.4944 -2.0987 18 6 6.4317 -4.9487 1.2701 19 1 6.1017 -4.3256 2.1014 20 6 5.6520 -6.2807 1.2568 21 6 6.5723 -7.2097 2.0796 22 6 7.9641 -6.6376 1.9147 23 6 9.2031 -7.2086 2.1530 24 6 10.3571 -6.4841 1.9277 25 6 10.2763 -5.1848 1.4624 26 6 9.0417 -4.6136 1.2243 27 6 7.8833 -5.3385 1.4497 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6796 0.8895 30 1 3.8746 -0.6807 -0.8904 31 1 3.6580 -3.1505 -0.8896 32 1 3.6586 -3.1501 0.8904 33 1 7.1606 -5.7495 -1.1344 34 1 6.7905 -4.2535 -2.0251 35 1 4.6562 -6.1109 -0.8923 36 1 5.2608 -6.2107 -2.5635 37 1 3.3402 -4.8004 -2.3942 38 1 4.6819 -6.1667 1.7403 39 1 5.5375 -6.6524 0.2385 40 1 6.5325 -8.2260 1.6880 41 1 6.2798 -7.1962 3.1295 42 1 9.2671 -8.2235 2.5168 43 1 11.3218 -6.9323 2.1149 44 1 11.1777 -4.6167 1.2862 45 1 8.9793 -3.5987 0.8605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269756048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:09 Heat of formation + Delta-G solvation = -113.476091 kcal Electronic energy + Delta-G solvation = -28691.763688 eV Core-core repulsion = 24800.393330 eV Total energy + Delta-G solvation = -3891.370358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30610 -38.69023 -38.19033 -37.07765 -36.95882 -35.85621 -34.94969 -33.41559 -32.04365 -30.10266 -29.82892 -27.83381 -27.12097 -23.78494 -23.47512 -22.99896 -21.81729 -21.55947 -19.94540 -19.44666 -18.89294 -18.28449 -17.66509 -17.09202 -16.82014 -16.45158 -16.32253 -16.04171 -15.94614 -15.73717 -15.24228 -14.94225 -14.80618 -14.43218 -14.20746 -13.97187 -13.78558 -13.65078 -13.50233 -13.37837 -13.24026 -13.07842 -12.98442 -12.88757 -12.70081 -12.41672 -12.36204 -12.16681 -12.00900 -11.99036 -11.73952 -11.68318 -11.63987 -11.17841 -10.84011 -10.59273 -10.03199 -9.72514 -9.45729 -8.36071 -6.39908 -0.68862 0.41821 0.47617 1.29342 1.31276 1.41572 1.68453 2.29067 2.81662 2.84549 2.97502 3.19637 3.28563 3.42763 3.62914 3.82722 4.03278 4.09353 4.12265 4.16680 4.21159 4.24149 4.27197 4.34419 4.41009 4.58600 4.63169 4.66497 4.74927 4.77651 4.87908 4.92715 5.05235 5.07632 5.14174 5.18891 5.23390 5.32956 5.38238 5.48458 5.54363 5.62148 5.62725 5.79204 6.11558 6.19816 6.64748 6.96301 7.23842 8.79250 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.003555 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.001084 B = 7874.193464 C = 8289.633613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.017 3.983 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.517 4.517 8 H 0.056 0.944 9 C -0.013 4.013 10 C -0.587 4.587 11 S 2.601 3.399 12 O -1.000 7.000 13 O -0.992 6.992 14 N -0.979 5.979 15 C 0.111 3.889 16 C 0.041 3.959 17 O -0.597 6.597 18 C 0.178 3.822 19 H 0.094 0.906 20 C -0.135 4.135 21 C -0.075 4.075 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.133 4.133 26 C -0.118 4.118 27 C -0.123 4.123 28 H 0.270 0.730 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.170 0.830 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.400 0.600 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.134 0.866 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.411 -22.075 1.595 28.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.182 4.182 3 Si 0.741 3.259 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.052 4.052 10 C -0.719 4.719 11 S 2.701 3.299 12 O -0.990 6.990 13 O -0.982 6.982 14 N -0.815 5.815 15 C -0.013 4.013 16 C -0.038 4.038 17 O -0.407 6.407 18 C 0.072 3.928 19 H 0.112 0.888 20 C -0.173 4.173 21 C -0.112 4.112 22 C -0.093 4.093 23 C -0.129 4.129 24 C -0.133 4.133 25 C -0.151 4.151 26 C -0.137 4.137 27 C -0.125 4.125 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.187 0.813 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.252 0.748 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.166 0.834 43 H 0.168 0.832 44 H 0.152 0.848 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.415 -20.865 1.736 27.883 hybrid contribution -0.944 0.938 -0.188 1.344 sum 17.471 -19.927 1.547 26.546 Atomic orbital electron populations 1.69986 1.07570 1.28250 1.51917 1.25770 0.95593 1.02588 0.94201 0.86136 0.79817 0.80131 0.79834 1.18590 1.19515 1.18147 1.21110 0.89752 0.93990 1.50749 0.92597 1.19329 0.97659 0.91426 0.96827 1.30488 1.21854 1.05745 1.13808 1.04937 0.78751 0.73563 0.72626 1.93490 1.79531 1.79375 1.46625 1.93466 1.79342 1.79157 1.46220 1.57296 1.84234 1.28233 1.11719 1.21585 0.97747 0.98498 0.83487 1.23208 0.90105 0.89762 1.00687 1.86398 1.29955 1.36382 1.87955 1.20665 0.92027 0.95472 0.84620 0.88799 1.23085 0.98991 0.91926 1.03344 1.21114 0.88486 1.00027 1.01557 1.20845 0.96428 0.93818 0.98232 1.20961 0.90617 1.01089 1.00219 1.21395 0.99594 0.93835 0.98478 1.21265 0.96860 0.96606 1.00335 1.20715 0.93030 0.99105 1.00812 1.20846 0.94561 0.95895 1.01183 0.92128 0.96062 0.96031 0.81292 0.85030 0.86554 0.90376 0.90012 0.89767 0.74836 0.88516 0.87547 0.87826 0.88926 0.83393 0.83232 0.84805 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 2 C 0.02 1.01 5.47 84.65 0.46 1.47 16 3 Si 0.92 45.36 27.47 68.60 1.88 47.25 16 4 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.26 -12.41 6.54 99.48 0.65 -11.76 16 7 C -0.52 -29.82 9.66 25.60 0.25 -29.57 16 8 H 0.06 3.37 7.99 -2.91 -0.02 3.35 16 9 C -0.01 -0.67 4.05 29.85 0.12 -0.54 16 10 C -0.59 -23.15 5.87 71.98 0.42 -22.72 16 11 S 2.60 99.05 5.13 -56.49 -0.29 98.76 16 12 O -1.00 -43.14 16.71 -127.65 -2.13 -45.27 16 13 O -0.99 -43.14 16.58 -127.65 -2.12 -45.26 16 14 N -0.98 -26.63 2.66 -493.78 -1.31 -27.94 16 15 C 0.11 2.44 5.20 86.38 0.45 2.89 16 16 C 0.04 0.67 6.95 71.98 0.50 1.17 16 17 O -0.60 -13.81 9.92 -148.98 -1.48 -15.29 16 18 C 0.18 4.22 3.09 44.91 0.14 4.36 16 19 H 0.09 2.54 7.15 -2.38 -0.02 2.52 16 20 C -0.14 -1.99 6.15 31.56 0.19 -1.80 16 21 C -0.07 -0.90 6.77 30.57 0.21 -0.69 16 22 C -0.09 -1.62 6.14 -19.59 -0.12 -1.74 16 23 C -0.11 -1.64 10.04 22.30 0.22 -1.42 16 24 C -0.12 -1.80 10.05 22.24 0.22 -1.57 16 25 C -0.13 -2.70 10.05 22.24 0.22 -2.47 16 26 C -0.12 -3.08 10.00 22.30 0.22 -2.86 16 27 C -0.12 -2.91 5.15 -19.59 -0.10 -3.01 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.02 1.07 7.20 -2.38 -0.02 1.06 16 30 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 31 H 0.17 6.19 4.69 -2.39 -0.01 6.18 16 32 H 0.13 4.67 8.14 -2.39 -0.02 4.65 16 33 H 0.12 1.97 7.59 -2.39 -0.02 1.95 16 34 H 0.08 2.08 6.92 -2.39 -0.02 2.07 16 35 H 0.08 1.02 5.28 -2.38 -0.01 1.01 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.40 6.22 9.12 -74.05 -0.68 5.54 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 1.23 4.34 -2.39 -0.01 1.22 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 44 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.09 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -81.03 366.91 -1.45 -82.48 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.28 Total: 21.44 kcal Atomic # 6 Polarization: -61.94 SS G_CDS: 3.42 Total: -58.52 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.01 Total: -85.57 kcal Atomic # 8 Polarization: -100.10 SS G_CDS: -5.73 Total: -105.83 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Atomic # 16 Polarization: 99.05 SS G_CDS: -0.29 Total: 98.76 kcal Total: -81.03 -1.45 -82.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269756048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.001 kcal (2) G-P(sol) polarization free energy of solvation -81.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds