Wall clock time and date at job start Tue Mar 31 2020 22:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99775 * 2 1 4 4 H 1.48501 * 109.46926 * 239.99731 * 3 2 1 5 5 H 1.48497 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46783 * 119.99859 * 3 2 1 7 7 C 1.37873 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00345 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47116 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47351 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54632 * 68.36969 * 11 10 9 13 13 O 1.42105 * 110.54011 * 291.62633 * 11 10 9 14 14 N 1.65601 * 104.45175 * 180.02562 * 11 10 9 15 15 C 1.46498 * 120.00219 * 89.99423 * 14 11 10 16 16 C 1.52991 * 109.47218 * 263.20244 * 15 14 11 17 17 O 1.42904 * 109.46962 * 66.00581 * 16 15 14 18 18 C 1.46499 * 119.99694 * 269.99561 * 14 11 10 19 19 H 1.09006 * 110.26745 * 355.33199 * 18 14 11 20 20 C 1.54345 * 110.30483 * 233.25345 * 18 14 11 21 21 C 1.54347 * 102.38918 * 214.72786 * 20 18 14 22 22 C 1.51373 * 105.17164 * 26.34879 * 21 20 18 23 23 C 1.38499 * 130.39096 * 162.80922 * 22 21 20 24 24 C 1.38098 * 120.21196 * 180.02562 * 23 22 21 25 25 C 1.38257 * 119.93675 * 359.97438 * 24 23 22 26 26 C 1.38099 * 119.93324 * 0.02562 * 25 24 23 27 27 C 1.38212 * 109.75828 * 342.80963 * 22 21 20 28 28 H 0.96997 * 120.00242 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47535 * 59.99225 * 9 7 2 30 30 H 1.09000 * 109.47153 * 299.99564 * 9 7 2 31 31 H 1.08997 * 109.47544 * 60.00092 * 10 9 7 32 32 H 1.09001 * 109.47402 * 299.99616 * 10 9 7 33 33 H 1.09004 * 109.46857 * 143.20153 * 15 14 11 34 34 H 1.09006 * 109.46895 * 23.21085 * 15 14 11 35 35 H 1.08999 * 109.47001 * 185.99489 * 16 15 14 36 36 H 1.08992 * 109.47893 * 306.00252 * 16 15 14 37 37 H 0.96698 * 114.00450 * 180.02562 * 17 16 15 38 38 H 1.08993 * 110.81964 * 332.95552 * 20 18 14 39 39 H 1.09001 * 110.82346 * 96.30803 * 20 18 14 40 40 H 1.09004 * 110.30012 * 145.26865 * 21 20 18 41 41 H 1.08997 * 110.30688 * 267.42489 * 21 20 18 42 42 H 1.07993 * 119.89128 * 359.97438 * 23 22 21 43 43 H 1.07997 * 120.03475 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.02937 * 179.97438 * 25 24 23 45 45 H 1.08007 * 119.88844 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3384 -5.2330 -0.0002 12 8 0.6648 -5.4193 -1.2374 13 8 0.6640 -5.4200 1.2365 14 7 2.5206 -6.3927 0.0006 15 6 3.0427 -6.9056 1.2696 16 6 4.3331 -6.1653 1.6267 17 8 4.0371 -4.7924 1.8905 18 6 3.0443 -6.9056 -1.2679 19 1 2.4913 -6.4791 -2.1048 20 6 2.9587 -8.4463 -1.2988 21 6 4.2231 -8.8323 -2.0955 22 6 5.1963 -7.6952 -1.8694 23 6 6.5661 -7.6341 -2.0644 24 6 7.2567 -6.4713 -1.7848 25 6 6.5792 -5.3639 -1.3092 26 6 5.2133 -5.4230 -1.1141 27 6 4.5191 -6.5881 -1.3939 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8905 32 1 2.8720 -3.6043 -0.8895 33 1 3.2502 -7.9714 1.1728 34 1 2.3043 -6.7492 2.0560 35 1 4.7781 -6.6176 2.5130 36 1 5.0331 -6.2326 0.7940 37 1 4.8105 -4.2610 2.1238 38 1 2.9961 -8.8567 -0.2898 39 1 2.0565 -8.7740 -1.8154 40 1 4.6382 -9.7663 -1.7168 41 1 3.9886 -8.9242 -3.1560 42 1 7.0960 -8.4988 -2.4356 43 1 8.3249 -6.4270 -1.9376 44 1 7.1179 -4.4539 -1.0896 45 1 4.6849 -4.5576 -0.7421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269756050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:12 Heat of formation + Delta-G solvation = -91.526032 kcal Electronic energy + Delta-G solvation = -29133.478668 eV Core-core repulsion = 25243.060136 eV Total energy + Delta-G solvation = -3890.418532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.59524 -37.44476 -36.66405 -36.17913 -35.31948 -34.04695 -33.74941 -31.24905 -30.93128 -29.34757 -28.89649 -26.20802 -25.42411 -22.90974 -22.74007 -21.51198 -20.96331 -20.46344 -18.53887 -17.82175 -17.37959 -16.80107 -16.39404 -15.82893 -15.51200 -15.20005 -15.02314 -14.86493 -14.76389 -14.43735 -14.25918 -13.68366 -13.40395 -13.08032 -13.03512 -12.83942 -12.46393 -12.40419 -12.10095 -11.99416 -11.83555 -11.59858 -11.50484 -11.41979 -11.23872 -11.11650 -11.02668 -10.89111 -10.82389 -10.71866 -10.32107 -10.24270 -9.89147 -9.66715 -9.25426 -8.81904 -8.75963 -8.57201 -8.42386 -6.04820 -4.09407 0.89631 1.23286 1.28172 3.06950 3.30668 3.35355 3.37028 3.64414 4.15201 4.25401 4.34829 4.40737 4.53481 4.67312 4.82838 4.89333 4.95728 5.00079 5.03528 5.08931 5.20709 5.27035 5.30340 5.38169 5.43144 5.51895 5.58154 5.63400 5.65602 5.82456 5.85029 5.87616 5.99137 6.03639 6.10555 6.26272 6.35006 6.43512 6.48630 6.76904 6.83207 6.88740 7.42999 7.49441 7.67943 7.88571 8.27622 8.93557 9.54246 11.06424 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.004260 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.484662 B = 6571.948952 C = 7556.446260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.030 3.970 10 C -0.589 4.589 11 S 2.587 3.413 12 O -0.973 6.973 13 O -0.964 6.964 14 N -0.990 5.990 15 C 0.117 3.883 16 C 0.038 3.962 17 O -0.564 6.564 18 C 0.184 3.816 19 H 0.119 0.881 20 C -0.128 4.128 21 C -0.080 4.080 22 C -0.093 4.093 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.092 4.092 27 C -0.105 4.105 28 H 0.264 0.736 29 H 0.027 0.973 30 H 0.031 0.969 31 H 0.150 0.850 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.380 0.620 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.023 -18.611 -1.372 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.078 0.922 9 C -0.009 4.009 10 C -0.722 4.722 11 S 2.688 3.312 12 O -0.964 6.964 13 O -0.955 6.955 14 N -0.823 5.823 15 C -0.009 4.009 16 C -0.041 4.041 17 O -0.371 6.371 18 C 0.077 3.923 19 H 0.136 0.864 20 C -0.167 4.167 21 C -0.117 4.117 22 C -0.093 4.093 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.110 4.110 27 C -0.107 4.107 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.167 0.833 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.228 0.772 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.269 -18.938 -1.487 23.172 hybrid contribution 1.811 1.488 0.087 2.346 sum 15.080 -17.450 -1.399 23.105 Atomic orbital electron populations 1.69951 1.06100 1.27122 1.49897 1.25061 0.94930 0.99401 0.95130 0.86563 0.79501 0.82773 0.78590 1.20190 1.21167 1.20138 1.20946 0.92944 0.89723 1.51616 0.92157 1.18927 0.92754 0.90800 0.98404 1.30617 1.13667 1.16756 1.11196 1.05744 0.74786 0.76877 0.73819 1.93508 1.71670 1.85549 1.45624 1.93505 1.71487 1.85259 1.45213 1.57717 1.58181 1.56609 1.09819 1.21376 0.95914 0.97998 0.85618 1.23047 0.98222 0.83094 0.99723 1.86469 1.38135 1.20381 1.92100 1.20430 0.90201 0.94812 0.86844 0.86371 1.22683 0.98214 0.94310 1.01505 1.21033 0.93321 0.96359 1.01029 1.20522 0.93614 0.96060 0.99146 1.20560 0.92869 0.98220 1.01432 1.21038 0.99689 0.93149 0.99674 1.21088 0.94190 0.98664 1.00372 1.20872 0.94189 0.97534 0.98391 1.20888 0.96043 0.94188 0.99545 0.92599 0.95424 0.95100 0.83264 0.87142 0.89223 0.87990 0.93446 0.91527 0.77177 0.89926 0.89654 0.90585 0.89850 0.86474 0.86123 0.85804 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.51 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.80 4.98 -27.88 -0.14 0.66 16 10 C -0.59 -12.02 5.39 37.16 0.20 -11.82 16 11 S 2.59 50.44 5.42 -107.50 -0.58 49.86 16 12 O -0.97 -21.22 16.56 -57.54 -0.95 -22.17 16 13 O -0.96 -21.37 16.52 -57.54 -0.95 -22.33 16 14 N -0.99 -14.18 2.68 -107.43 -0.29 -14.47 16 15 C 0.12 1.41 5.77 -4.05 -0.02 1.39 16 16 C 0.04 0.41 6.80 37.15 0.25 0.66 16 17 O -0.56 -7.02 10.31 -35.23 -0.36 -7.39 16 18 C 0.18 2.32 3.25 -68.05 -0.22 2.10 16 19 H 0.12 1.66 6.86 -51.93 -0.36 1.30 16 20 C -0.13 -1.24 6.64 -25.32 -0.17 -1.41 16 21 C -0.08 -0.66 6.77 -26.85 -0.18 -0.84 16 22 C -0.09 -0.93 6.14 -104.20 -0.64 -1.57 16 23 C -0.11 -1.03 10.04 -39.54 -0.40 -1.42 16 24 C -0.12 -1.07 10.05 -39.63 -0.40 -1.46 16 25 C -0.13 -1.27 10.05 -39.63 -0.40 -1.67 16 26 C -0.09 -1.09 7.23 -39.54 -0.29 -1.37 16 27 C -0.10 -1.23 4.34 -104.21 -0.45 -1.68 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.15 2.84 4.94 -51.93 -0.26 2.58 16 32 H 0.11 2.06 7.02 -51.92 -0.36 1.69 16 33 H 0.09 0.83 5.96 -51.93 -0.31 0.52 16 34 H 0.10 1.40 6.79 -51.93 -0.35 1.05 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.69 3.97 -51.93 -0.21 0.48 16 37 H 0.38 3.29 9.12 45.56 0.42 3.71 16 38 H 0.08 0.72 5.85 -51.93 -0.30 0.42 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.13 1.67 6.45 -52.48 -0.34 1.33 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -35.90 363.66 -10.62 -46.52 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.42 Total: 5.95 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: -3.26 Total: -31.58 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.45 Total: -40.75 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -2.27 Total: -51.88 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 50.44 SS G_CDS: -0.58 Total: 49.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.90 -10.62 -46.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269756050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.008 kcal (2) G-P(sol) polarization free energy of solvation -35.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds