Wall clock time and date at job start Tue Mar 31 2020 22:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99775 * 2 1 4 4 H 1.48501 * 109.46926 * 239.99731 * 3 2 1 5 5 H 1.48497 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46783 * 119.99859 * 3 2 1 7 7 C 1.37873 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00345 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47116 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47351 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54632 * 68.36969 * 11 10 9 13 13 O 1.42105 * 110.54011 * 291.62633 * 11 10 9 14 14 N 1.65601 * 104.45175 * 180.02562 * 11 10 9 15 15 C 1.46498 * 120.00219 * 89.99423 * 14 11 10 16 16 C 1.52991 * 109.47218 * 263.20244 * 15 14 11 17 17 O 1.42904 * 109.46962 * 66.00581 * 16 15 14 18 18 C 1.46499 * 119.99694 * 269.99561 * 14 11 10 19 19 H 1.09006 * 110.26745 * 355.33199 * 18 14 11 20 20 C 1.54345 * 110.30483 * 233.25345 * 18 14 11 21 21 C 1.54347 * 102.38918 * 214.72786 * 20 18 14 22 22 C 1.51373 * 105.17164 * 26.34879 * 21 20 18 23 23 C 1.38499 * 130.39096 * 162.80922 * 22 21 20 24 24 C 1.38098 * 120.21196 * 180.02562 * 23 22 21 25 25 C 1.38257 * 119.93675 * 359.97438 * 24 23 22 26 26 C 1.38099 * 119.93324 * 0.02562 * 25 24 23 27 27 C 1.38212 * 109.75828 * 342.80963 * 22 21 20 28 28 H 0.96997 * 120.00242 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47535 * 59.99225 * 9 7 2 30 30 H 1.09000 * 109.47153 * 299.99564 * 9 7 2 31 31 H 1.08997 * 109.47544 * 60.00092 * 10 9 7 32 32 H 1.09001 * 109.47402 * 299.99616 * 10 9 7 33 33 H 1.09004 * 109.46857 * 143.20153 * 15 14 11 34 34 H 1.09006 * 109.46895 * 23.21085 * 15 14 11 35 35 H 1.08999 * 109.47001 * 185.99489 * 16 15 14 36 36 H 1.08992 * 109.47893 * 306.00252 * 16 15 14 37 37 H 0.96698 * 114.00450 * 180.02562 * 17 16 15 38 38 H 1.08993 * 110.81964 * 332.95552 * 20 18 14 39 39 H 1.09001 * 110.82346 * 96.30803 * 20 18 14 40 40 H 1.09004 * 110.30012 * 145.26865 * 21 20 18 41 41 H 1.08997 * 110.30688 * 267.42489 * 21 20 18 42 42 H 1.07993 * 119.89128 * 359.97438 * 23 22 21 43 43 H 1.07997 * 120.03475 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.02937 * 179.97438 * 25 24 23 45 45 H 1.08007 * 119.88844 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3384 -5.2330 -0.0002 12 8 0.6648 -5.4193 -1.2374 13 8 0.6640 -5.4200 1.2365 14 7 2.5206 -6.3927 0.0006 15 6 3.0427 -6.9056 1.2696 16 6 4.3331 -6.1653 1.6267 17 8 4.0371 -4.7924 1.8905 18 6 3.0443 -6.9056 -1.2679 19 1 2.4913 -6.4791 -2.1048 20 6 2.9587 -8.4463 -1.2988 21 6 4.2231 -8.8323 -2.0955 22 6 5.1963 -7.6952 -1.8694 23 6 6.5661 -7.6341 -2.0644 24 6 7.2567 -6.4713 -1.7848 25 6 6.5792 -5.3639 -1.3092 26 6 5.2133 -5.4230 -1.1141 27 6 4.5191 -6.5881 -1.3939 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8905 32 1 2.8720 -3.6043 -0.8895 33 1 3.2502 -7.9714 1.1728 34 1 2.3043 -6.7492 2.0560 35 1 4.7781 -6.6176 2.5130 36 1 5.0331 -6.2326 0.7940 37 1 4.8105 -4.2610 2.1238 38 1 2.9961 -8.8567 -0.2898 39 1 2.0565 -8.7740 -1.8154 40 1 4.6382 -9.7663 -1.7168 41 1 3.9886 -8.9242 -3.1560 42 1 7.0960 -8.4988 -2.4356 43 1 8.3249 -6.4270 -1.9376 44 1 7.1179 -4.4539 -1.0896 45 1 4.6849 -4.5576 -0.7421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269756050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:11 Heat of formation + Delta-G solvation = -117.750883 kcal Electronic energy + Delta-G solvation = -29134.615863 eV Core-core repulsion = 25243.060136 eV Total energy + Delta-G solvation = -3891.555727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40425 -38.46012 -38.14109 -37.20799 -36.98327 -35.85652 -34.93873 -33.09615 -31.92969 -30.24262 -29.69148 -27.59990 -26.99270 -23.88264 -23.61141 -23.29186 -21.74369 -21.48027 -19.78652 -19.30646 -18.64358 -18.24587 -17.65586 -17.03633 -16.93108 -16.54304 -16.33209 -15.97573 -15.83739 -15.70560 -15.26256 -14.87134 -14.49504 -14.41926 -14.15402 -13.91351 -13.74449 -13.66398 -13.46758 -13.25697 -13.17748 -13.12973 -12.86133 -12.74020 -12.71222 -12.48002 -12.23382 -12.21651 -12.09322 -11.88539 -11.79562 -11.68975 -11.54395 -11.09026 -10.81391 -10.61862 -10.02067 -9.51911 -9.39805 -8.23992 -6.38061 -0.66466 0.45581 0.52525 1.39893 1.44407 1.52373 1.71753 2.38877 2.82812 2.89135 3.08700 3.19228 3.29272 3.45464 3.62668 3.90714 4.07707 4.09591 4.19111 4.19997 4.24094 4.29788 4.37044 4.38341 4.43626 4.58822 4.68071 4.70708 4.81122 4.86353 4.93241 4.96131 5.11455 5.13444 5.19091 5.25423 5.29642 5.33851 5.40970 5.58613 5.65945 5.68857 5.71719 5.82914 6.08708 6.15412 6.74517 6.96112 7.31461 8.88587 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.004260 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.484662 B = 6571.948952 C = 7556.446260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.026 3.974 10 C -0.584 4.584 11 S 2.604 3.396 12 O -1.002 7.002 13 O -0.995 6.995 14 N -0.976 5.976 15 C 0.107 3.893 16 C 0.040 3.960 17 O -0.591 6.591 18 C 0.173 3.827 19 H 0.095 0.905 20 C -0.126 4.126 21 C -0.073 4.073 22 C -0.093 4.093 23 C -0.112 4.112 24 C -0.114 4.114 25 C -0.132 4.132 26 C -0.109 4.109 27 C -0.122 4.122 28 H 0.267 0.733 29 H -0.003 1.003 30 H -0.001 1.001 31 H 0.165 0.835 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.395 0.605 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.134 0.866 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.739 -20.197 -1.634 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.570 4.570 8 H 0.094 0.906 9 C -0.012 4.012 10 C -0.717 4.717 11 S 2.704 3.296 12 O -0.992 6.992 13 O -0.986 6.986 14 N -0.812 5.812 15 C -0.017 4.017 16 C -0.038 4.038 17 O -0.401 6.401 18 C 0.067 3.933 19 H 0.113 0.887 20 C -0.165 4.165 21 C -0.110 4.110 22 C -0.093 4.093 23 C -0.130 4.130 24 C -0.132 4.132 25 C -0.150 4.150 26 C -0.128 4.128 27 C -0.124 4.124 28 H 0.075 0.925 29 H 0.015 0.985 30 H 0.018 0.982 31 H 0.183 0.817 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.245 0.755 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.152 0.848 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.005 -20.515 -1.744 26.703 hybrid contribution 0.709 1.884 0.147 2.018 sum 17.714 -18.631 -1.597 25.758 Atomic orbital electron populations 1.70115 1.08195 1.28319 1.51080 1.26149 0.95838 1.03923 0.94396 0.85343 0.78121 0.77147 0.79493 1.18776 1.20992 1.18563 1.21425 0.93884 0.90491 1.51240 0.90577 1.18769 0.93470 0.93543 0.95462 1.30513 1.12638 1.15738 1.12762 1.04836 0.75217 0.77005 0.72519 1.93462 1.73118 1.85958 1.46693 1.93456 1.72991 1.85724 1.46381 1.57254 1.57469 1.54696 1.11776 1.21707 0.96080 1.00221 0.83710 1.23097 0.97361 0.82222 1.01119 1.86384 1.39773 1.21644 1.92278 1.20684 0.90819 0.96877 0.84890 0.88682 1.22732 0.99439 0.91572 1.02726 1.21052 0.91898 0.96711 1.01358 1.20754 0.94293 0.95850 0.98422 1.20889 0.92495 0.99089 1.00509 1.21366 1.00954 0.92562 0.98316 1.21254 0.93553 0.99734 1.00447 1.20838 0.95081 0.97147 0.99701 1.20786 0.95230 0.95067 1.01296 0.92455 0.98469 0.98227 0.81743 0.85662 0.85728 0.89886 0.90897 0.90756 0.75450 0.88642 0.89441 0.87994 0.89029 0.83849 0.83659 0.84846 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.90 13.29 21.45 0.28 -58.61 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.98 44.23 29.54 68.60 2.03 46.25 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.53 -30.58 9.11 25.60 0.23 -30.34 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C 0.03 1.49 4.98 29.85 0.15 1.64 16 10 C -0.58 -24.98 5.39 71.98 0.39 -24.59 16 11 S 2.60 106.54 5.42 -56.49 -0.31 106.23 16 12 O -1.00 -46.15 16.56 -127.65 -2.11 -48.26 16 13 O -1.00 -46.31 16.52 -127.65 -2.11 -48.41 16 14 N -0.98 -28.00 2.68 -493.79 -1.32 -29.33 16 15 C 0.11 2.48 5.77 86.38 0.50 2.98 16 16 C 0.04 0.80 6.80 71.98 0.49 1.29 16 17 O -0.59 -14.44 10.31 -148.98 -1.54 -15.98 16 18 C 0.17 4.29 3.25 44.92 0.15 4.44 16 19 H 0.10 2.77 6.86 -2.38 -0.02 2.75 16 20 C -0.13 -2.16 6.64 31.51 0.21 -1.95 16 21 C -0.07 -0.95 6.77 30.52 0.21 -0.74 16 22 C -0.09 -1.58 6.14 -19.59 -0.12 -1.70 16 23 C -0.11 -1.60 10.04 22.30 0.22 -1.37 16 24 C -0.11 -1.67 10.05 22.24 0.22 -1.45 16 25 C -0.13 -2.41 10.05 22.24 0.22 -2.19 16 26 C -0.11 -2.48 7.23 22.30 0.16 -2.32 16 27 C -0.12 -2.68 4.34 -19.60 -0.08 -2.76 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.17 6.47 4.94 -2.39 -0.01 6.46 16 32 H 0.13 4.88 7.02 -2.39 -0.02 4.87 16 33 H 0.13 1.98 5.96 -2.38 -0.01 1.97 16 34 H 0.08 2.27 6.79 -2.38 -0.02 2.26 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.39 3.97 -2.39 -0.01 1.38 16 37 H 0.40 6.54 9.12 -74.06 -0.68 5.86 16 38 H 0.10 1.37 5.85 -2.39 -0.01 1.36 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.10 0.85 8.14 -2.38 -0.02 0.84 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 43 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 45 H 0.11 2.88 6.45 -2.91 -0.02 2.86 16 Total: -1.00 -81.26 363.66 -1.32 -82.58 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.35 Total: 24.45 kcal Atomic # 6 Polarization: -62.32 SS G_CDS: 3.41 Total: -58.92 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -1.04 Total: -87.94 kcal Atomic # 8 Polarization: -106.89 SS G_CDS: -5.76 Total: -112.65 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 106.54 SS G_CDS: -0.31 Total: 106.23 kcal Total: -81.26 -1.32 -82.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269756050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.173 kcal (2) G-P(sol) polarization free energy of solvation -81.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds