Wall clock time and date at job start Tue Mar 31 2020 22:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99890 * 2 1 4 4 H 1.48503 * 109.47340 * 270.00502 * 3 2 1 5 5 H 1.48502 * 109.46799 * 30.00107 * 3 2 1 6 6 H 1.48493 * 109.47453 * 149.99989 * 3 2 1 7 7 C 1.37878 * 120.00487 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99723 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00209 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47410 * 179.97438 * 9 7 2 11 11 S 1.81389 * 109.47392 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54583 * 68.37634 * 11 10 9 13 13 O 1.42105 * 110.54258 * 291.62468 * 11 10 9 14 14 N 1.65603 * 104.45259 * 180.02562 * 11 10 9 15 15 C 1.47419 * 125.65136 * 89.96882 * 14 11 10 16 16 C 1.54905 * 104.92834 * 155.80118 * 15 14 11 17 17 C 1.55448 * 101.45165 * 37.00468 * 16 15 14 18 18 H 1.08998 * 110.85957 * 82.96191 * 17 16 15 19 19 C 1.53001 * 110.70895 * 206.14261 * 17 16 15 20 20 O 1.42894 * 109.47402 * 288.55142 * 19 17 16 21 21 C 1.35908 * 116.99843 * 180.02562 * 20 19 17 22 22 C 1.38731 * 120.05590 * 359.72429 * 21 20 19 23 23 C 1.38142 * 119.93951 * 179.74546 * 22 21 20 24 24 C 1.38269 * 120.05681 * 0.50890 * 23 22 21 25 25 C 1.38262 * 120.11160 * 359.76382 * 24 23 22 26 26 C 1.38141 * 120.05584 * 359.97438 * 25 24 23 27 27 C 1.47026 * 125.64288 * 269.95330 * 14 11 10 28 28 H 0.97001 * 120.00487 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47413 * 59.99539 * 9 7 2 30 30 H 1.09003 * 109.47092 * 299.99996 * 9 7 2 31 31 H 1.08998 * 109.46993 * 59.99547 * 10 9 7 32 32 H 1.09003 * 109.46681 * 300.00187 * 10 9 7 33 33 H 1.09002 * 110.36926 * 274.69587 * 15 14 11 34 34 H 1.08995 * 110.36556 * 36.90871 * 15 14 11 35 35 H 1.09002 * 111.00852 * 155.13877 * 16 15 14 36 36 H 1.09004 * 111.00578 * 278.99532 * 16 15 14 37 37 H 1.09002 * 109.46937 * 48.55046 * 19 17 16 38 38 H 1.09001 * 109.47052 * 168.54227 * 19 17 16 39 39 H 1.07995 * 120.02481 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.97080 * 180.27544 * 23 22 21 41 41 H 1.08001 * 119.94262 * 179.74732 * 24 23 22 42 42 H 1.07997 * 119.97148 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.02723 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.88266 * 300.48868 * 27 14 11 45 45 H 1.08997 * 109.88244 * 61.50225 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 16 5.8356 -2.6363 -0.0001 12 8 6.3343 -2.1460 1.2368 13 8 6.3342 -2.1458 -1.2371 14 7 6.2490 -4.2399 -0.0010 15 6 6.4628 -5.0715 -1.1993 16 6 7.3922 -6.2180 -0.7288 17 6 6.8558 -6.4808 0.7063 18 1 5.9849 -7.1359 0.6812 19 6 7.9519 -7.0747 1.5933 20 8 8.2120 -8.4213 1.1921 21 6 9.1661 -9.0979 1.8840 22 6 9.8422 -8.4766 2.9240 23 6 10.8080 -9.1683 3.6291 24 6 11.1083 -10.4753 3.2924 25 6 10.4399 -11.0948 2.2527 26 6 9.4695 -10.4093 1.5479 27 6 6.4639 -5.0699 1.1934 28 1 -0.4851 0.8400 0.0004 29 1 3.8746 -0.6806 0.8904 30 1 3.8752 -0.6795 -0.8895 31 1 3.6587 -3.1501 -0.8903 32 1 3.6580 -3.1504 0.8897 33 1 5.5147 -5.4739 -1.5560 34 1 6.9461 -4.4892 -1.9838 35 1 7.2753 -7.0994 -1.3593 36 1 8.4322 -5.8926 -0.7038 37 1 8.8618 -6.4832 1.4916 38 1 7.6246 -7.0620 2.6329 39 1 9.6111 -7.4543 3.1843 40 1 11.3315 -8.6865 4.4417 41 1 11.8665 -11.0130 3.8423 42 1 10.6766 -12.1156 1.9914 43 1 8.9479 -10.8936 0.7356 44 1 7.2681 -4.6496 1.7972 45 1 5.5468 -5.1193 1.7804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272447208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:25 Heat of formation + Delta-G solvation = -87.160220 kcal Electronic energy + Delta-G solvation = -26460.327300 eV Core-core repulsion = 22570.098084 eV Total energy + Delta-G solvation = -3890.229216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.52607 -38.88411 -37.46771 -36.78139 -35.61678 -33.97021 -32.39391 -31.50249 -31.32019 -30.05025 -29.60970 -26.21767 -25.91711 -23.11276 -22.50225 -22.37224 -21.17354 -20.62665 -18.83416 -18.55838 -17.76692 -17.04474 -16.87036 -16.26638 -16.04107 -15.85904 -15.62784 -15.05308 -14.82519 -14.35795 -14.08892 -13.89186 -13.73380 -13.70884 -13.51249 -13.20306 -13.01523 -12.81266 -12.52066 -11.99673 -11.92665 -11.83105 -11.74276 -11.71740 -11.54598 -11.41385 -11.29136 -11.27034 -11.22717 -10.94606 -10.83538 -10.46799 -10.18083 -9.76626 -9.45084 -9.38365 -8.89658 -8.68248 -8.56415 -6.18413 -4.19880 0.55476 0.96122 1.08239 2.70055 2.93365 3.24987 3.32394 3.36330 3.42521 4.10715 4.13179 4.22013 4.33989 4.40136 4.45760 4.51866 4.60666 4.75243 4.88706 4.90463 5.00917 5.07323 5.08527 5.13187 5.18754 5.22253 5.31306 5.38647 5.47827 5.51052 5.61824 5.63170 5.68961 5.73964 5.92207 5.95166 6.03574 6.03825 6.16209 6.25618 6.33857 6.40673 6.78932 6.91239 7.06340 7.52539 8.34519 8.82532 9.41062 10.93897 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.001987 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.712584 B =14091.747653 C =14101.007866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.581 4.581 11 S 2.605 3.395 12 O -0.961 6.961 13 O -0.960 6.960 14 N -1.018 6.018 15 C 0.113 3.887 16 C -0.120 4.120 17 C -0.097 4.097 18 H 0.099 0.901 19 C 0.068 3.932 20 O -0.311 6.311 21 C 0.133 3.867 22 C -0.210 4.210 23 C -0.080 4.080 24 C -0.162 4.162 25 C -0.082 4.082 26 C -0.154 4.154 27 C 0.129 3.871 28 H 0.267 0.733 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.073 0.927 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.552 -21.762 3.921 30.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.715 4.715 11 S 2.704 3.296 12 O -0.952 6.952 13 O -0.951 6.951 14 N -0.854 5.854 15 C -0.012 4.012 16 C -0.159 4.159 17 C -0.117 4.117 18 H 0.117 0.883 19 C -0.008 4.008 20 O -0.225 6.225 21 C 0.087 3.913 22 C -0.229 4.229 23 C -0.098 4.098 24 C -0.181 4.181 25 C -0.100 4.100 26 C -0.173 4.173 27 C 0.003 3.997 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.091 0.909 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.892 -20.886 3.758 29.780 hybrid contribution -0.279 0.677 0.223 0.765 sum 20.613 -20.210 3.981 29.141 Atomic orbital electron populations 1.69877 1.06201 1.27278 1.49928 1.24989 0.94829 0.99172 0.94122 0.86923 0.80686 0.83683 0.79143 1.19648 1.20724 1.18642 1.20840 0.87777 0.94918 1.52342 0.90417 1.19417 0.99944 0.87454 0.97849 1.30333 1.21149 1.09071 1.10900 1.05311 0.79029 0.71180 0.74080 1.93540 1.78952 1.77303 1.45388 1.93543 1.78972 1.77178 1.45379 1.58827 1.85831 1.28479 1.12301 1.22050 0.99450 0.91994 0.87738 1.22869 0.99531 0.98315 0.95154 1.22262 0.98182 0.95852 0.95405 0.88262 1.22838 0.98631 0.80551 0.98746 1.86053 1.53394 1.26676 1.56336 1.19043 0.88938 0.91981 0.91305 1.21331 1.01074 1.01385 0.99099 1.20983 0.96035 0.94413 0.98397 1.21078 1.01996 0.95596 0.99385 1.20981 0.94672 0.99583 0.94770 1.20472 1.01240 0.92482 1.03084 1.21519 1.01604 0.89097 0.87467 0.92356 0.94946 0.95368 0.85636 0.85668 0.91254 0.89621 0.89483 0.90557 0.91412 0.91381 0.85344 0.85803 0.85989 0.85431 0.85198 0.90883 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.48 9.66 -34.44 -0.33 -14.82 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 10 C -0.58 -10.55 6.12 37.16 0.23 -10.32 16 11 S 2.60 44.00 5.65 -107.50 -0.61 43.39 16 12 O -0.96 -18.59 17.60 -57.54 -1.01 -19.61 16 13 O -0.96 -18.62 17.28 -57.54 -0.99 -19.61 16 14 N -1.02 -12.90 3.62 -111.43 -0.40 -13.30 16 15 C 0.11 1.18 7.06 -2.53 -0.02 1.16 16 16 C -0.12 -1.01 6.50 -24.43 -0.16 -1.17 16 17 C -0.10 -0.80 3.21 -88.63 -0.28 -1.09 16 18 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 19 C 0.07 0.53 4.03 37.16 0.15 0.68 16 20 O -0.31 -2.88 10.08 -19.45 -0.20 -3.08 16 21 C 0.13 1.21 6.69 -39.22 -0.26 0.95 16 22 C -0.21 -1.72 9.04 -39.43 -0.36 -2.08 16 23 C -0.08 -0.58 10.04 -39.61 -0.40 -0.98 16 24 C -0.16 -1.10 10.04 -39.56 -0.40 -1.50 16 25 C -0.08 -0.56 10.04 -39.61 -0.40 -0.96 16 26 C -0.15 -1.26 9.99 -39.43 -0.39 -1.65 16 27 C 0.13 1.32 6.49 -3.06 -0.02 1.30 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 30 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 31 H 0.13 2.08 8.14 -51.92 -0.42 1.66 16 32 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.94 7.66 -51.93 -0.40 0.54 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.65 7.95 -51.93 -0.41 0.24 16 37 H 0.07 0.50 7.51 -51.93 -0.39 0.11 16 38 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 39 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 40 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 43 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 44 H 0.07 0.74 7.82 -51.93 -0.41 0.33 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -35.12 381.91 -11.12 -46.25 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.92 Total: -1.56 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -2.85 Total: -28.79 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.37 Total: -39.51 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -2.20 Total: -42.30 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 44.00 SS G_CDS: -0.61 Total: 43.39 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.12 -11.12 -46.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272447208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.914 kcal (2) G-P(sol) polarization free energy of solvation -35.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds