Wall clock time and date at job start Tue Mar 31 2020 22:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99890 * 2 1 4 4 H 1.48503 * 109.47340 * 270.00502 * 3 2 1 5 5 H 1.48502 * 109.46799 * 30.00107 * 3 2 1 6 6 H 1.48493 * 109.47453 * 149.99989 * 3 2 1 7 7 C 1.37878 * 120.00487 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99723 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00209 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47410 * 179.97438 * 9 7 2 11 11 S 1.81389 * 109.47392 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54583 * 68.37634 * 11 10 9 13 13 O 1.42105 * 110.54258 * 291.62468 * 11 10 9 14 14 N 1.65603 * 104.45259 * 180.02562 * 11 10 9 15 15 C 1.47419 * 125.65136 * 89.96882 * 14 11 10 16 16 C 1.54905 * 104.92834 * 155.80118 * 15 14 11 17 17 C 1.55448 * 101.45165 * 37.00468 * 16 15 14 18 18 H 1.08998 * 110.85957 * 82.96191 * 17 16 15 19 19 C 1.53001 * 110.70895 * 206.14261 * 17 16 15 20 20 O 1.42894 * 109.47402 * 288.55142 * 19 17 16 21 21 C 1.35908 * 116.99843 * 180.02562 * 20 19 17 22 22 C 1.38731 * 120.05590 * 359.72429 * 21 20 19 23 23 C 1.38142 * 119.93951 * 179.74546 * 22 21 20 24 24 C 1.38269 * 120.05681 * 0.50890 * 23 22 21 25 25 C 1.38262 * 120.11160 * 359.76382 * 24 23 22 26 26 C 1.38141 * 120.05584 * 359.97438 * 25 24 23 27 27 C 1.47026 * 125.64288 * 269.95330 * 14 11 10 28 28 H 0.97001 * 120.00487 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47413 * 59.99539 * 9 7 2 30 30 H 1.09003 * 109.47092 * 299.99996 * 9 7 2 31 31 H 1.08998 * 109.46993 * 59.99547 * 10 9 7 32 32 H 1.09003 * 109.46681 * 300.00187 * 10 9 7 33 33 H 1.09002 * 110.36926 * 274.69587 * 15 14 11 34 34 H 1.08995 * 110.36556 * 36.90871 * 15 14 11 35 35 H 1.09002 * 111.00852 * 155.13877 * 16 15 14 36 36 H 1.09004 * 111.00578 * 278.99532 * 16 15 14 37 37 H 1.09002 * 109.46937 * 48.55046 * 19 17 16 38 38 H 1.09001 * 109.47052 * 168.54227 * 19 17 16 39 39 H 1.07995 * 120.02481 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.97080 * 180.27544 * 23 22 21 41 41 H 1.08001 * 119.94262 * 179.74732 * 24 23 22 42 42 H 1.07997 * 119.97148 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.02723 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.88266 * 300.48868 * 27 14 11 45 45 H 1.08997 * 109.88244 * 61.50225 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 16 5.8356 -2.6363 -0.0001 12 8 6.3343 -2.1460 1.2368 13 8 6.3342 -2.1458 -1.2371 14 7 6.2490 -4.2399 -0.0010 15 6 6.4628 -5.0715 -1.1993 16 6 7.3922 -6.2180 -0.7288 17 6 6.8558 -6.4808 0.7063 18 1 5.9849 -7.1359 0.6812 19 6 7.9519 -7.0747 1.5933 20 8 8.2120 -8.4213 1.1921 21 6 9.1661 -9.0979 1.8840 22 6 9.8422 -8.4766 2.9240 23 6 10.8080 -9.1683 3.6291 24 6 11.1083 -10.4753 3.2924 25 6 10.4399 -11.0948 2.2527 26 6 9.4695 -10.4093 1.5479 27 6 6.4639 -5.0699 1.1934 28 1 -0.4851 0.8400 0.0004 29 1 3.8746 -0.6806 0.8904 30 1 3.8752 -0.6795 -0.8895 31 1 3.6587 -3.1501 -0.8903 32 1 3.6580 -3.1504 0.8897 33 1 5.5147 -5.4739 -1.5560 34 1 6.9461 -4.4892 -1.9838 35 1 7.2753 -7.0994 -1.3593 36 1 8.4322 -5.8926 -0.7038 37 1 8.8618 -6.4832 1.4916 38 1 7.6246 -7.0620 2.6329 39 1 9.6111 -7.4543 3.1843 40 1 11.3315 -8.6865 4.4417 41 1 11.8665 -11.0130 3.8423 42 1 10.6766 -12.1156 1.9914 43 1 8.9479 -10.8936 0.7356 44 1 7.2681 -4.6496 1.7972 45 1 5.5468 -5.1193 1.7804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272447208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:24 Heat of formation + Delta-G solvation = -110.379048 kcal Electronic energy + Delta-G solvation = -26461.334144 eV Core-core repulsion = 22570.098084 eV Total energy + Delta-G solvation = -3891.236060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.11170 -39.62586 -38.23479 -38.08421 -37.07548 -35.90860 -33.48662 -33.16723 -31.86150 -30.68712 -30.32843 -27.90715 -26.83507 -23.82057 -23.37778 -22.96196 -22.85855 -21.31299 -20.02677 -19.40314 -19.16900 -18.54766 -17.72220 -17.08150 -16.99274 -16.79027 -16.63301 -16.39599 -16.02307 -15.40583 -15.33854 -14.88441 -14.78251 -14.58538 -14.41362 -14.28860 -13.89115 -13.81587 -13.77678 -13.28698 -13.20695 -13.15290 -13.08633 -12.97954 -12.73800 -12.45731 -12.33297 -12.25307 -12.14273 -11.96738 -11.87722 -11.72574 -11.55054 -11.47737 -11.30807 -10.85732 -9.95080 -9.91843 -9.13143 -8.37774 -6.43752 -0.80486 0.42685 0.52950 1.31173 1.32901 1.42996 1.64776 2.18747 2.28371 2.77770 2.88488 2.95990 3.05591 3.45739 3.62280 3.76922 3.90588 3.94423 4.02442 4.06030 4.26395 4.27160 4.33189 4.37017 4.43583 4.49685 4.54233 4.54872 4.62226 4.65534 4.78521 4.87759 4.98471 5.01561 5.04938 5.06519 5.12442 5.13440 5.27734 5.39539 5.44969 5.45979 5.52184 5.64323 5.89720 6.15278 6.48060 6.62211 7.20647 8.77687 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.001987 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.712584 B =14091.747653 C =14101.007866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.013 3.987 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.528 4.528 8 H 0.049 0.951 9 C -0.018 4.018 10 C -0.587 4.587 11 S 2.636 3.364 12 O -0.986 6.986 13 O -0.985 6.985 14 N -1.014 6.014 15 C 0.103 3.897 16 C -0.114 4.114 17 C -0.087 4.087 18 H 0.108 0.892 19 C 0.068 3.932 20 O -0.322 6.322 21 C 0.112 3.888 22 C -0.223 4.223 23 C -0.090 4.090 24 C -0.167 4.167 25 C -0.086 4.086 26 C -0.169 4.169 27 C 0.118 3.882 28 H 0.270 0.730 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.135 0.865 44 H 0.074 0.926 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.582 -22.913 4.309 32.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.185 4.185 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.173 1.173 7 C -0.567 4.567 8 H 0.067 0.933 9 C -0.057 4.057 10 C -0.719 4.719 11 S 2.735 3.265 12 O -0.976 6.976 13 O -0.976 6.976 14 N -0.853 5.853 15 C -0.022 4.022 16 C -0.152 4.152 17 C -0.107 4.107 18 H 0.127 0.873 19 C -0.008 4.008 20 O -0.236 6.236 21 C 0.067 3.933 22 C -0.241 4.241 23 C -0.108 4.108 24 C -0.185 4.185 25 C -0.103 4.103 26 C -0.188 4.188 27 C -0.007 4.007 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.168 0.832 43 H 0.153 0.847 44 H 0.092 0.908 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 22.915 -22.037 4.147 32.062 hybrid contribution -0.885 0.862 0.116 1.241 sum 22.030 -21.176 4.263 30.853 Atomic orbital electron populations 1.70005 1.07876 1.28411 1.51592 1.25883 0.95656 1.03044 0.93965 0.86020 0.79919 0.79373 0.79898 1.18519 1.19860 1.17291 1.21167 0.90237 0.93863 1.51417 0.93291 1.19379 0.97233 0.91185 0.97869 1.30335 1.23229 1.05941 1.12363 1.04068 0.77743 0.71901 0.72833 1.93503 1.78958 1.78733 1.46405 1.93506 1.78998 1.78626 1.46454 1.58449 1.84997 1.27604 1.14265 1.22334 1.00883 0.92189 0.86749 1.22863 0.98940 0.97990 0.95456 1.22177 0.98711 0.94692 0.95155 0.87334 1.22850 0.98587 0.80212 0.99118 1.86011 1.53713 1.27116 1.56758 1.19280 0.89499 0.92537 0.92015 1.21519 1.01458 1.01942 0.99206 1.21294 0.95884 0.94830 0.98754 1.21419 1.02184 0.95611 0.99324 1.21306 0.94020 1.00585 0.94423 1.20713 1.01898 0.92518 1.03673 1.21797 1.02476 0.89797 0.86679 0.92098 0.94914 0.95072 0.84340 0.84298 0.89567 0.90319 0.87853 0.90658 0.91158 0.90444 0.84653 0.84098 0.83909 0.83218 0.84703 0.90762 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 2 C 0.01 0.76 5.47 84.66 0.46 1.22 16 3 Si 0.93 43.80 27.47 68.60 1.88 45.69 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 7 C -0.53 -29.82 9.66 25.60 0.25 -29.58 16 8 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 9 C -0.02 -0.82 4.05 29.85 0.12 -0.70 16 10 C -0.59 -20.82 6.12 71.98 0.44 -20.38 16 11 S 2.64 85.99 5.65 -56.49 -0.32 85.67 16 12 O -0.99 -37.02 17.60 -127.65 -2.25 -39.26 16 13 O -0.99 -37.24 17.28 -127.65 -2.21 -39.45 16 14 N -1.01 -23.98 3.62 -506.45 -1.83 -25.82 16 15 C 0.10 1.95 7.06 86.85 0.61 2.57 16 16 C -0.11 -1.67 6.50 32.09 0.21 -1.46 16 17 C -0.09 -1.25 3.21 -9.50 -0.03 -1.28 16 18 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 19 C 0.07 0.94 4.03 71.98 0.29 1.23 16 20 O -0.32 -5.55 10.08 -92.51 -0.93 -6.48 16 21 C 0.11 1.93 6.69 22.51 0.15 2.08 16 22 C -0.22 -3.39 9.04 22.37 0.20 -3.19 16 23 C -0.09 -1.16 10.04 22.25 0.22 -0.93 16 24 C -0.17 -1.94 10.04 22.28 0.22 -1.72 16 25 C -0.09 -1.03 10.04 22.25 0.22 -0.80 16 26 C -0.17 -2.58 9.99 22.37 0.22 -2.36 16 27 C 0.12 2.18 6.49 86.73 0.56 2.74 16 28 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 30 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 31 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 32 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.62 7.66 -2.39 -0.02 1.60 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.14 7.95 -2.38 -0.02 1.12 16 37 H 0.07 0.93 7.51 -2.39 -0.02 0.91 16 38 H 0.08 0.92 7.67 -2.39 -0.02 0.90 16 39 H 0.14 1.73 6.30 -2.91 -0.02 1.71 16 40 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 41 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 43 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.07 1.37 7.82 -2.39 -0.02 1.36 16 45 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -75.61 381.91 -0.28 -75.89 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.91 Total: 13.73 kcal Atomic # 6 Polarization: -56.72 SS G_CDS: 4.16 Total: -52.56 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -1.53 Total: -83.23 kcal Atomic # 8 Polarization: -79.81 SS G_CDS: -5.38 Total: -85.19 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Atomic # 16 Polarization: 85.99 SS G_CDS: -0.32 Total: 85.67 kcal Total: -75.61 -0.28 -75.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272447208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.493 kcal (2) G-P(sol) polarization free energy of solvation -75.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds