Wall clock time and date at job start Tue Mar 31 2020 22:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00002 * 2 1 4 4 C 1.53003 * 109.47204 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46682 * 64.13704 * 4 3 2 6 6 C 1.46896 * 111.00283 * 75.91106 * 5 4 3 7 7 C 1.50703 * 109.47247 * 62.66152 * 6 5 4 8 8 H 1.07995 * 119.99950 * 355.31046 * 7 6 5 9 9 C 1.37879 * 120.00039 * 175.30792 * 7 6 5 10 10 N 1.31512 * 120.00229 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99668 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47312 * 60.00359 * 11 9 7 13 13 H 1.48506 * 109.47077 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47379 * 299.99652 * 11 9 7 15 15 C 1.46907 * 110.99838 * 199.86246 * 5 4 3 16 16 C 1.50705 * 109.46878 * 66.04728 * 15 5 4 17 17 C 1.38250 * 119.99865 * 259.72492 * 16 15 5 18 18 C 1.38210 * 120.00269 * 179.81191 * 17 16 15 19 19 C 1.38265 * 119.99408 * 0.39960 * 18 17 16 20 20 N 1.48016 * 119.99443 * 179.83426 * 19 18 17 21 21 O 1.21801 * 119.99623 * 180.02562 * 20 19 18 22 22 O 1.21799 * 120.00581 * 0.02562 * 20 19 18 23 23 C 1.38213 * 120.00213 * 359.85398 * 19 18 17 24 24 C 1.38208 * 119.99721 * 79.99951 * 16 15 5 25 25 N 1.48019 * 120.00234 * 359.97438 * 24 16 15 26 26 O 1.21806 * 119.99895 * 180.02562 * 25 24 16 27 27 O 1.21795 * 120.00141 * 359.97438 * 25 24 16 28 28 H 1.09004 * 109.47321 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47497 * 300.00352 * 1 2 3 30 30 H 1.09011 * 109.47258 * 59.99985 * 1 2 3 31 31 H 1.08999 * 109.46885 * 60.00049 * 3 2 1 32 32 H 1.08997 * 109.47343 * 299.99611 * 3 2 1 33 33 H 1.08999 * 109.47439 * 304.13930 * 4 3 2 34 34 H 1.09000 * 109.47396 * 184.13657 * 4 3 2 35 35 H 1.09000 * 109.47479 * 182.66657 * 6 5 4 36 36 H 1.09001 * 109.47118 * 302.66709 * 6 5 4 37 37 H 0.96995 * 120.00294 * 180.02562 * 10 9 7 38 38 H 1.08995 * 109.46924 * 186.04687 * 15 5 4 39 39 H 1.08999 * 109.46974 * 306.04563 * 15 5 4 40 40 H 1.08004 * 119.99935 * 0.02562 * 17 16 15 41 41 H 1.07993 * 120.00618 * 180.23381 * 18 17 16 42 42 H 1.07996 * 119.99838 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9763 0.5435 -1.2454 6 6 3.9114 1.4832 -2.3726 7 6 4.8548 2.6318 -2.1239 8 1 5.3868 2.7005 -1.1866 9 6 5.0388 3.5950 -3.0932 10 7 4.3907 3.5117 -4.2345 11 14 6.2087 5.0183 -2.7852 12 1 7.5751 4.4916 -2.5390 13 1 6.2278 5.9094 -3.9731 14 1 5.7528 5.7860 -1.5986 15 6 5.3281 -0.0133 -1.1012 16 6 5.3020 -1.1444 -0.1057 17 6 5.7205 -0.9307 1.1945 18 6 5.6929 -1.9670 2.1085 19 6 5.2545 -3.2195 1.7204 20 7 5.2284 -4.3303 2.6984 21 8 4.8426 -5.4338 2.3564 22 8 5.5927 -4.1409 3.8451 23 6 4.8410 -3.4345 0.4192 24 6 4.8649 -2.3967 -0.4941 25 7 4.4220 -2.6268 -1.8875 26 8 4.0364 -3.7304 -2.2296 27 8 4.4422 -1.7125 -2.6919 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 1.6885 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8518 0.5812 0.8514 34 1 3.9786 2.1777 0.0748 35 1 4.1978 0.9699 -3.2905 36 1 2.8945 1.8631 -2.4709 37 1 4.5204 4.1891 -4.9165 38 1 5.6722 -0.3861 -2.0659 39 1 6.0058 0.7647 -0.7497 40 1 6.0659 0.0470 1.4968 41 1 6.0163 -1.7992 3.1252 42 1 4.4989 -4.4129 0.1160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316767973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:27 Heat of formation + Delta-G solvation = -2.338250 kcal Electronic energy + Delta-G solvation = -30641.338101 eV Core-core repulsion = 26208.493826 eV Total energy + Delta-G solvation = -4432.844274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59693 -42.03604 -39.93560 -37.96454 -36.88579 -36.74304 -36.09811 -33.27962 -32.51888 -32.23793 -29.71685 -28.20492 -26.82360 -26.35158 -25.85493 -24.22771 -23.36518 -22.71350 -22.10323 -20.30551 -19.83888 -19.09963 -18.36746 -17.87739 -17.77269 -17.32988 -16.83522 -16.33882 -16.17308 -15.95355 -15.62216 -15.05880 -14.76824 -14.50140 -14.38973 -13.75631 -13.49358 -13.20366 -12.79046 -12.36321 -12.17330 -12.03980 -11.86969 -11.61899 -11.55434 -11.42933 -11.29257 -11.23549 -11.09751 -11.05242 -10.83089 -10.65379 -10.45620 -10.42826 -10.14560 -10.05321 -9.83169 -9.80544 -9.29097 -8.55073 -7.43577 -6.15735 -4.26870 -0.62843 -0.27733 0.83974 0.87022 1.28100 1.50079 2.67880 3.16690 3.23485 3.24775 3.79971 3.94343 3.98284 4.14476 4.16484 4.27284 4.33371 4.78225 4.87980 4.95614 5.13159 5.17759 5.28803 5.37446 5.48338 5.55924 5.59574 5.66091 5.79611 5.83927 5.99847 5.99961 6.11146 6.19865 6.32743 6.57368 7.04767 7.30896 7.39957 7.48299 7.75411 7.79267 7.85292 8.03564 8.11265 8.82170 9.40506 10.89220 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012192 B = 0.003691 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.072636 B = 7583.376302 C = 7881.303616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.071 3.929 4 C 0.048 3.952 5 N -0.513 5.513 6 C 0.192 3.808 7 C -0.561 4.561 8 H 0.055 0.945 9 C 0.071 3.929 10 N -0.882 5.882 11 Si 0.887 3.113 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.278 1.278 15 C 0.073 3.927 16 C 0.054 3.946 17 C -0.117 4.117 18 C -0.012 4.012 19 C -0.058 4.058 20 N 0.033 4.967 21 O -0.152 6.152 22 O -0.152 6.152 23 C 0.005 3.995 24 C -0.025 4.025 25 N 0.029 4.971 26 O -0.186 6.186 27 O -0.081 6.081 28 H 0.077 0.923 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.032 0.968 37 H 0.265 0.735 38 H 0.118 0.882 39 H 0.063 0.937 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -8.184 11.824 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.005 4.005 4 C -0.081 4.081 5 N -0.236 5.236 6 C 0.067 3.933 7 C -0.600 4.600 8 H 0.073 0.927 9 C -0.133 4.133 10 N -0.520 5.520 11 Si 0.715 3.285 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.204 1.204 15 C -0.054 4.054 16 C 0.052 3.948 17 C -0.136 4.136 18 C -0.032 4.032 19 C -0.142 4.142 20 N 0.554 4.446 21 O -0.369 6.369 22 O -0.369 6.369 23 C -0.015 4.015 24 C -0.109 4.109 25 N 0.552 4.448 26 O -0.391 6.391 27 O -0.311 6.311 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.185 0.815 41 H 0.185 0.815 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.422 -8.108 11.743 14.276 hybrid contribution 0.762 1.484 0.282 1.691 sum 1.184 -6.625 12.025 13.780 Atomic orbital electron populations 1.22648 0.82374 1.01905 0.99487 1.87931 1.18404 1.28418 1.95264 1.22556 0.93986 0.84238 0.99761 1.22202 0.93429 0.99449 0.92990 1.62582 1.18945 1.37268 1.04842 1.19826 0.96917 0.88353 0.88176 1.21646 1.27105 1.09657 1.01623 0.92695 1.24918 0.95624 0.97818 0.94957 1.69921 1.41260 1.34944 1.05841 0.86752 0.81525 0.82497 0.77767 1.20269 1.21121 1.20360 1.21512 0.94373 0.91844 0.97687 1.20809 0.84601 0.93633 0.95763 1.21300 1.01196 1.00316 0.90801 1.21382 0.90481 0.89088 1.02202 1.20686 1.14674 0.88970 0.89899 1.43356 0.98049 1.01768 1.01409 1.94585 1.48490 1.09803 1.84020 1.94550 1.49699 1.89406 1.03235 1.20604 0.90454 1.01031 0.89393 1.20623 1.10072 0.95513 0.84697 1.43171 0.98973 1.00627 1.01981 1.94535 1.50199 1.11396 1.82977 1.94669 1.54542 1.35292 1.46619 0.90463 0.94951 0.94135 0.94232 0.92237 0.92878 0.91119 0.93338 0.94957 0.92530 0.86463 0.91882 0.81476 0.81536 0.80602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.45 10.64 -35.23 -0.37 -6.83 16 3 C 0.07 1.16 6.12 37.16 0.23 1.39 16 4 C 0.05 0.79 5.07 -3.82 -0.02 0.77 16 5 N -0.51 -9.51 3.82 -237.51 -0.91 -10.42 16 6 C 0.19 4.40 5.00 -4.98 -0.02 4.38 16 7 C -0.56 -13.53 7.49 -34.44 -0.26 -13.79 16 8 H 0.05 1.26 5.99 -52.49 -0.31 0.95 16 9 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.88 -24.17 13.29 55.43 0.74 -23.43 16 11 Si 0.89 19.62 29.54 -169.99 -5.02 14.60 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 13 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 C 0.07 1.19 3.62 -4.97 -0.02 1.17 16 16 C 0.05 0.72 4.65 -104.63 -0.49 0.23 16 17 C -0.12 -1.14 8.25 -39.59 -0.33 -1.47 16 18 C -0.01 -0.11 9.56 -39.58 -0.38 -0.49 16 19 C -0.06 -0.66 6.85 -79.95 -0.55 -1.21 16 20 N 0.03 0.42 4.45 33.96 0.15 0.57 16 21 O -0.15 -2.05 18.45 -29.46 -0.54 -2.59 16 22 O -0.15 -1.91 18.45 -29.46 -0.54 -2.45 16 23 C 0.01 0.06 9.06 -39.58 -0.36 -0.30 16 24 C -0.02 -0.35 6.85 -79.95 -0.55 -0.90 16 25 N 0.03 0.49 4.45 33.96 0.15 0.64 16 26 O -0.19 -3.15 18.45 -29.46 -0.54 -3.70 16 27 O -0.08 -1.52 14.76 -29.46 -0.43 -1.95 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.08 6.77 -51.93 -0.35 0.72 16 33 H 0.05 0.76 5.76 -51.93 -0.30 0.46 16 34 H 0.07 1.23 6.23 -51.93 -0.32 0.91 16 35 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.03 0.81 6.75 -51.93 -0.35 0.46 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.12 2.07 5.79 -51.93 -0.30 1.77 16 39 H 0.06 0.99 6.83 -51.93 -0.35 0.64 16 40 H 0.17 1.24 8.04 -52.48 -0.42 0.81 16 41 H 0.17 1.08 7.61 -52.49 -0.40 0.68 16 42 H 0.18 2.04 7.16 -52.49 -0.38 1.66 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -28.85 362.52 -8.33 -37.18 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.74 Total: -0.13 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.72 Total: -6.94 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.13 Total: -32.65 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -2.44 Total: -17.52 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.85 -8.33 -37.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316767973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.841 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds