Wall clock time and date at job start Tue Mar 31 2020 22:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48499 * 109.47145 * 239.99787 * 3 2 1 5 5 H 1.48502 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47127 * 119.99607 * 3 2 1 7 7 C 1.40228 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00202 * 197.86965 * 7 2 1 9 9 C 1.41114 * 119.99550 * 17.87108 * 7 2 1 10 10 C 1.40889 * 120.10359 * 204.62537 * 9 7 2 11 11 C 1.36309 * 119.89498 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10271 * 0.02562 * 11 10 9 13 13 C 1.47648 * 119.89299 * 179.97438 * 12 11 10 14 14 O 1.21582 * 119.99912 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00163 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00352 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47456 * 179.97438 * 16 15 13 18 18 C 1.38255 * 119.93820 * 89.99960 * 17 16 15 19 19 C 1.38193 * 120.10685 * 179.75736 * 18 17 16 20 20 C 1.38701 * 120.07108 * 0.24367 * 19 18 17 21 21 C 1.38971 * 119.81706 * 359.94166 * 20 19 18 22 22 C 1.38196 * 119.94545 * 270.25513 * 17 16 15 23 23 O 1.36113 * 120.78218 * 180.21021 * 21 20 19 24 24 C 1.43182 * 116.69833 * 342.72004 * 23 21 20 25 25 C 1.53461 * 108.23351 * 46.24788 * 24 23 21 26 26 O 1.36110 * 119.40063 * 179.80204 * 20 19 18 27 27 C 1.40007 * 120.21382 * 0.25710 * 12 11 10 28 28 C 1.36320 * 120.10343 * 359.47838 * 27 12 11 29 29 H 0.97001 * 120.00315 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.05096 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.95060 * 179.97438 * 11 10 9 32 32 H 0.97008 * 120.00124 * 0.02562 * 15 13 12 33 33 H 1.09005 * 109.47111 * 60.00096 * 16 15 13 34 34 H 1.08994 * 109.46786 * 300.00161 * 16 15 13 35 35 H 1.07993 * 119.94887 * 0.02659 * 18 17 16 36 36 H 1.08005 * 119.96441 * 180.26580 * 19 18 17 37 37 H 1.08000 * 119.96198 * 0.04059 * 22 17 16 38 38 H 1.09000 * 109.70407 * 286.56423 * 24 23 21 39 39 H 1.08999 * 109.70842 * 165.93921 * 24 23 21 40 40 H 1.08999 * 109.70903 * 180.57025 * 25 24 23 41 41 H 1.09008 * 109.74194 * 59.97631 * 25 24 23 42 42 H 1.08001 * 119.95051 * 179.73967 * 27 12 11 43 43 H 1.08004 * 120.05475 * 180.23273 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2754 2.7465 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0077 -1.2144 0.0005 8 1 3.0485 -1.2368 0.2875 9 6 1.3532 -2.4071 -0.3740 10 6 1.8268 -3.6494 0.0921 11 6 1.1916 -4.7990 -0.2727 12 6 0.0705 -4.7465 -1.1097 13 6 -0.6137 -5.9946 -1.5025 14 8 -0.2035 -7.0656 -1.0988 15 7 -1.6927 -5.9467 -2.3085 16 6 -2.3719 -7.1850 -2.6978 17 6 -3.5385 -6.8578 -3.5940 18 6 -3.3605 -6.7970 -4.9637 19 6 -4.4289 -6.5022 -5.7891 20 6 -5.6819 -6.2616 -5.2450 21 6 -5.8598 -6.3190 -3.8679 22 6 -4.7830 -6.6139 -3.0450 23 8 -7.0816 -6.0904 -3.3133 24 6 -8.0491 -5.4312 -4.1376 25 6 -8.0384 -6.0997 -5.5189 26 8 -6.7237 -5.9685 -6.0704 27 6 -0.4005 -3.5149 -1.5803 28 6 0.2249 -2.3595 -1.2165 29 1 -0.4850 0.8400 -0.0004 30 1 2.6919 -3.6909 0.7375 31 1 1.5542 -5.7518 0.0837 32 1 -2.0197 -5.0922 -2.6309 33 1 -2.7321 -7.6977 -1.8058 34 1 -1.6736 -7.8302 -3.2307 35 1 -2.3860 -6.9844 -5.3896 36 1 -4.2882 -6.4595 -6.8591 37 1 -4.9182 -6.6574 -1.9743 38 1 -7.7899 -4.3771 -4.2372 39 1 -9.0387 -5.5264 -3.6907 40 1 -8.7610 -5.6086 -6.1706 41 1 -8.2915 -7.1552 -5.4191 42 1 -1.2631 -3.4797 -2.2291 43 1 -0.1413 -1.4095 -1.5769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340066821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:16 Heat of formation + Delta-G solvation = -70.261429 kcal Electronic energy + Delta-G solvation = -27445.511132 eV Core-core repulsion = 23420.570751 eV Total energy + Delta-G solvation = -4024.940381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49887 -39.23678 -38.16031 -37.50888 -37.02476 -34.29453 -33.85753 -31.60349 -31.04497 -30.15398 -29.43235 -28.99395 -26.57721 -25.43640 -24.32298 -22.83685 -21.81968 -20.97321 -20.63454 -19.60548 -18.86804 -17.62489 -17.50920 -17.48253 -16.70251 -15.74948 -15.60178 -15.37745 -15.21401 -14.83723 -14.66912 -14.42165 -14.07184 -13.98521 -13.94234 -13.63695 -13.35438 -13.13256 -12.71910 -12.41748 -12.10585 -11.98306 -11.86468 -11.75624 -11.42055 -11.39255 -11.32334 -11.24624 -10.98052 -10.73599 -10.62912 -10.05582 -9.54547 -9.33804 -9.07640 -8.78831 -8.58976 -8.24779 -7.70586 -7.52978 -7.02567 -4.59235 0.99677 1.10878 2.25092 2.70683 2.92174 2.93013 2.94757 2.98915 3.05218 3.38635 3.74364 3.87767 3.88602 4.07069 4.35974 4.43758 4.52703 4.57846 4.65643 4.82439 5.01201 5.08342 5.15674 5.18753 5.44790 5.58850 5.70822 5.79134 5.89416 5.95011 6.06648 6.14740 6.33521 6.35647 6.44891 6.61831 6.78169 6.83729 6.92797 7.06775 7.14776 7.15043 7.44792 7.66839 7.80710 7.87148 8.08329 8.25660 8.40981 8.64148 8.76605 9.08721 9.89419 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.002349 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.135282 B =11919.154667 C =13369.829227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.443 4.443 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.284 4.284 13 C 0.572 3.428 14 O -0.576 6.576 15 N -0.738 5.738 16 C 0.168 3.832 17 C -0.096 4.096 18 C -0.095 4.095 19 C -0.115 4.115 20 C 0.052 3.948 21 C 0.047 3.953 22 C -0.093 4.093 23 O -0.307 6.307 24 C 0.020 3.980 25 C 0.021 3.979 26 O -0.308 6.308 27 C -0.062 4.062 28 C -0.179 4.179 29 H 0.287 0.713 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.399 0.601 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.426 -6.541 -11.024 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.259 4.259 11 C -0.041 4.041 12 C -0.288 4.288 13 C 0.367 3.633 14 O -0.458 6.458 15 N -0.392 5.392 16 C 0.044 3.956 17 C -0.097 4.097 18 C -0.114 4.114 19 C -0.134 4.134 20 C 0.007 3.993 21 C 0.003 3.997 22 C -0.112 4.112 23 O -0.221 6.221 24 C -0.056 4.056 25 C -0.055 4.055 26 O -0.223 6.223 27 C -0.081 4.081 28 C -0.198 4.198 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.425 -7.138 -10.724 20.097 hybrid contribution -0.311 1.317 -0.178 1.365 sum -15.737 -5.821 -10.902 20.009 Atomic orbital electron populations 1.69737 1.07905 1.30134 1.31713 1.26099 0.94808 1.01867 0.91915 0.86265 0.80207 0.79472 0.80343 1.18479 1.20076 1.18659 1.19815 0.98408 0.91196 1.37637 0.89748 1.17786 0.90375 0.92170 0.87137 1.20713 1.04622 0.92645 1.07872 1.20363 0.92907 0.97153 0.93693 1.18883 1.04513 0.90990 1.14412 1.18599 0.78554 0.89654 0.76483 1.90634 1.66556 1.31704 1.56882 1.45973 1.31704 1.08735 1.52759 1.19995 0.90760 0.87946 0.96885 1.19729 0.94084 1.01694 0.94166 1.20912 0.98678 0.99331 0.92438 1.20422 0.89826 1.02368 1.00740 1.18927 0.89332 1.03106 0.87953 1.18835 0.86472 1.04051 0.90391 1.20392 0.89538 1.01256 1.00032 1.86331 1.19977 1.75260 1.40563 1.23634 0.93484 0.96953 0.91497 1.23624 0.83590 1.02218 0.96065 1.86306 1.13395 1.84458 1.38123 1.20478 0.97332 0.92601 0.97702 1.20973 0.99959 0.96902 1.01949 0.90192 0.88392 0.88077 0.76592 0.91035 0.90839 0.84610 0.84632 0.84445 0.90345 0.86057 0.86104 0.90506 0.89353 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.55 10.96 55.56 0.61 -17.94 16 2 C 0.07 1.74 5.13 -17.31 -0.09 1.65 16 3 Si 0.91 17.30 29.60 -169.99 -5.03 12.27 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.44 -11.03 9.04 -37.74 -0.34 -11.37 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 9 C 0.13 3.28 5.57 -106.80 -0.60 2.69 16 10 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 11 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 12 C -0.28 -6.50 5.89 -104.73 -0.62 -7.12 16 13 C 0.57 12.16 7.76 -12.42 -0.10 12.06 16 14 O -0.58 -13.65 16.32 5.29 0.09 -13.56 16 15 N -0.74 -12.41 5.50 -62.49 -0.34 -12.76 16 16 C 0.17 2.36 5.79 -5.19 -0.03 2.33 16 17 C -0.10 -1.17 5.25 -104.63 -0.55 -1.72 16 18 C -0.09 -1.04 9.69 -39.59 -0.38 -1.42 16 19 C -0.11 -1.24 9.96 -39.43 -0.39 -1.63 16 20 C 0.05 0.61 6.49 -39.14 -0.25 0.35 16 21 C 0.05 0.58 6.49 -39.14 -0.25 0.32 16 22 C -0.09 -1.15 9.62 -39.43 -0.38 -1.53 16 23 O -0.31 -3.48 10.42 -32.89 -0.34 -3.82 16 24 C 0.02 0.15 7.26 37.40 0.27 0.42 16 25 C 0.02 0.14 7.26 37.40 0.27 0.41 16 26 O -0.31 -3.25 10.42 -32.88 -0.34 -3.59 16 27 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 28 C -0.18 -4.40 8.64 -39.27 -0.34 -4.73 16 29 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 30 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 31 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 32 H 0.40 6.24 6.47 -40.82 -0.26 5.97 16 33 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.09 1.69 6.37 -52.49 -0.33 1.36 16 43 H 0.12 2.98 6.16 -52.48 -0.32 2.66 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -30.31 366.92 -9.84 -40.15 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -5.09 Total: 11.85 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -4.91 Total: -18.13 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.27 Total: -30.70 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.60 Total: -20.97 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.31 -9.84 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340066821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.109 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds