Wall clock time and date at job start Tue Mar 31 2020 22:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86791 * 120.00288 * 2 1 4 4 H 1.48504 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47199 * 299.99314 * 3 2 1 6 6 H 1.48503 * 109.47436 * 59.99218 * 3 2 1 7 7 C 1.39898 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99796 * 184.75687 * 7 2 1 9 9 C 1.41192 * 119.99725 * 4.75851 * 7 2 1 10 10 C 1.40850 * 120.17286 * 145.09589 * 9 7 2 11 11 C 1.36410 * 119.81274 * 180.27277 * 10 9 7 12 12 C 1.39356 * 120.18276 * 359.47908 * 11 10 9 13 13 O 1.35636 * 119.82239 * 180.30148 * 12 11 10 14 14 C 1.35680 * 118.00373 * 75.49371 * 13 12 11 15 15 C 1.39032 * 119.91170 * 354.81813 * 14 13 12 16 16 C 1.37701 * 120.08162 * 179.72197 * 15 14 13 17 17 C 1.39741 * 119.91275 * 0.55455 * 16 15 14 18 18 C 1.47605 * 120.08119 * 179.74616 * 17 16 15 19 19 O 1.21593 * 119.99684 * 186.06418 * 18 17 16 20 20 N 1.34775 * 120.00350 * 6.06251 * 18 17 16 21 21 C 1.47070 * 136.05386 * 5.63396 * 20 18 17 22 22 C 1.53760 * 87.88608 * 152.96036 * 21 20 18 23 23 O 1.42895 * 114.39343 * 272.67489 * 22 21 20 24 24 C 1.47064 * 136.05765 * 185.99609 * 20 18 17 25 25 C 1.39738 * 119.83256 * 359.71754 * 17 16 15 26 26 C 1.37689 * 119.91839 * 0.02562 * 25 17 16 27 27 C 1.39346 * 120.35923 * 0.54505 * 12 11 10 28 28 C 1.36418 * 120.17844 * 359.70938 * 27 12 11 29 29 H 0.97001 * 119.99480 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.09366 * 359.97438 * 10 9 7 31 31 H 1.08002 * 119.91098 * 179.72696 * 11 10 9 32 32 H 1.07999 * 119.96537 * 359.97438 * 15 14 13 33 33 H 1.08003 * 120.04460 * 180.29515 * 16 15 14 34 34 H 1.09004 * 113.46398 * 267.69121 * 21 20 18 35 35 H 1.08996 * 113.46767 * 38.12990 * 21 20 18 36 36 H 1.08996 * 114.26560 * 139.78927 * 22 21 20 37 37 H 0.96710 * 113.99975 * 273.58627 * 23 22 21 38 38 H 1.08993 * 113.47270 * 321.86717 * 24 20 18 39 39 H 1.09005 * 113.46283 * 92.24948 * 24 20 18 40 40 H 1.08001 * 120.04072 * 180.02562 * 25 17 16 41 41 H 1.08001 * 119.96192 * 179.97438 * 26 25 17 42 42 H 1.07997 * 119.91423 * 179.73218 * 27 12 11 43 43 H 1.08004 * 120.09334 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7029 1.3462 0.0006 5 1 1.8843 2.3962 -1.2125 6 1 1.8840 2.3965 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0855 -1.2132 0.0781 9 6 1.3058 -2.4322 -0.1004 10 6 1.8670 -3.5159 -0.8037 11 6 1.1795 -4.6900 -0.9013 12 6 -0.0699 -4.8226 -0.2984 13 8 -0.7444 -5.9954 -0.3949 14 6 -0.3276 -7.0349 0.3710 15 6 0.8244 -6.9116 1.1395 16 6 1.2475 -7.9625 1.9224 17 6 0.5238 -9.1578 1.9348 18 6 0.9771 -10.2885 2.7684 19 8 0.4120 -11.3626 2.6951 20 7 2.0173 -10.1304 3.6106 21 6 2.8640 -9.0106 4.0491 22 6 3.0923 -9.7730 5.3648 23 8 2.1048 -9.5275 6.3681 24 6 2.8093 -11.0027 4.4908 25 6 -0.6304 -9.2797 1.1566 26 6 -1.0501 -8.2228 0.3804 27 6 -0.6323 -3.7552 0.3988 28 6 0.0401 -2.5726 0.5013 29 1 -0.4849 0.8401 -0.0004 30 1 2.8367 -3.4159 -1.2685 31 1 1.6063 -5.5205 -1.4439 32 1 1.3860 -5.9892 1.1257 33 1 2.1399 -7.8644 2.5229 34 1 3.7692 -8.8919 3.4536 35 1 2.3169 -8.0766 4.1763 36 1 4.1132 -9.7186 5.7426 37 1 2.2860 -8.7522 6.9169 38 1 2.2156 -11.7656 4.9942 39 1 3.6995 -11.4099 4.0113 40 1 -1.1925 -10.2019 1.1640 41 1 -1.9418 -8.3164 -0.2217 42 1 -1.6028 -3.8644 0.8597 43 1 -0.3972 -1.7461 1.0417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340557670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:46 Heat of formation + Delta-G solvation = -34.103166 kcal Electronic energy + Delta-G solvation = -27794.218988 eV Core-core repulsion = 23770.846546 eV Total energy + Delta-G solvation = -4023.372441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92851 -41.37246 -39.69542 -38.92628 -37.92898 -36.23858 -35.33993 -32.56015 -31.90863 -31.47447 -31.07769 -29.68130 -27.33151 -26.94836 -24.80204 -23.85866 -23.13315 -22.81009 -22.04695 -20.58123 -19.49109 -19.32590 -18.73852 -18.23929 -17.84676 -17.25146 -16.82279 -16.58728 -16.39483 -15.83969 -15.74079 -15.51410 -15.23844 -14.80694 -14.65375 -14.49798 -14.41280 -14.20332 -14.09248 -13.99373 -13.64254 -13.48663 -13.36701 -12.92536 -12.85401 -12.69228 -12.58436 -12.33833 -11.94583 -11.89609 -11.69015 -11.31464 -11.26120 -11.09330 -10.74464 -10.15647 -9.86827 -9.64070 -9.35857 -9.10457 -8.59970 -6.46200 -0.17834 0.27102 0.59822 1.00333 1.41717 1.45681 1.56562 1.71323 1.77146 2.20934 2.39937 2.74283 2.81244 2.99993 3.31391 3.47134 3.55408 3.73457 3.87714 4.12597 4.20338 4.27724 4.31216 4.32213 4.35202 4.42668 4.48804 4.55157 4.60985 4.76900 4.89658 4.91822 4.95726 5.03037 5.10496 5.10758 5.25848 5.29895 5.33115 5.47532 5.57162 5.76682 5.90250 6.00182 6.19823 6.51075 6.57161 6.72306 6.86211 6.89941 6.99922 7.01591 8.32663 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.002493 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.144170 B =11229.613331 C =12576.062227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.028 3.972 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.483 4.483 8 H 0.085 0.915 9 C 0.083 3.917 10 C -0.210 4.210 11 C -0.095 4.095 12 C -0.059 4.059 13 O -0.256 6.256 14 C 0.140 3.860 15 C -0.210 4.210 16 C -0.045 4.045 17 C -0.192 4.192 18 C 0.588 3.412 19 O -0.590 6.590 20 N -0.648 5.648 21 C 0.051 3.949 22 C 0.083 3.917 23 O -0.571 6.571 24 C 0.097 3.903 25 C -0.027 4.027 26 C -0.167 4.167 27 C -0.102 4.102 28 C -0.164 4.164 29 H 0.288 0.712 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.161 0.839 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.143 0.857 37 H 0.405 0.595 38 H 0.064 0.936 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.107 0.893 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.068 -11.913 9.548 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.177 1.177 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.513 4.513 8 H 0.103 0.897 9 C 0.081 3.919 10 C -0.229 4.229 11 C -0.113 4.113 12 C -0.101 4.101 13 O -0.167 6.167 14 C 0.095 3.905 15 C -0.229 4.229 16 C -0.063 4.063 17 C -0.195 4.195 18 C 0.381 3.619 19 O -0.472 6.472 20 N -0.382 5.382 21 C -0.071 4.071 22 C 0.023 3.977 23 O -0.380 6.380 24 C -0.025 4.025 25 C -0.046 4.046 26 C -0.185 4.185 27 C -0.121 4.121 28 C -0.184 4.184 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.150 0.850 33 H 0.178 0.822 34 H 0.148 0.852 35 H 0.106 0.894 36 H 0.160 0.840 37 H 0.256 0.744 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.125 0.875 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.978 -12.855 8.993 17.601 hybrid contribution 0.016 1.340 -0.122 1.345 sum 7.994 -11.516 8.871 16.590 Atomic orbital electron populations 1.69841 1.08844 1.30394 1.36967 1.26842 0.95736 1.04690 0.91311 0.85008 0.79334 0.75804 0.78694 1.17734 1.19541 1.19081 1.19891 0.95417 0.90849 1.45136 0.89715 1.18115 0.92563 0.92846 0.88379 1.20930 1.01831 0.94658 1.05512 1.20711 0.93492 0.98036 0.99081 1.18287 0.96176 0.84275 1.11393 1.84362 1.55159 1.18192 1.59010 1.20160 0.92639 0.88392 0.89305 1.21439 0.98483 1.01394 1.01561 1.21707 0.99051 0.90177 0.95378 1.19760 1.00313 0.95187 1.04273 1.17837 0.78952 0.87104 0.77970 1.90716 1.57651 1.29618 1.69245 1.49477 1.30319 1.15576 1.42806 1.24423 0.95020 0.92078 0.95584 1.23195 0.93764 0.94052 0.86646 1.86485 1.50185 1.52961 1.48365 1.23470 0.95367 0.95354 0.88304 1.21094 0.93788 0.97963 0.91704 1.20525 1.02662 0.90861 1.04489 1.20733 0.99267 0.93770 0.98329 1.21218 0.97620 0.96235 1.03283 0.90162 0.86615 0.86472 0.84962 0.82160 0.85202 0.89408 0.83977 0.74366 0.91755 0.85069 0.83769 0.83201 0.87514 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.30 10.59 21.82 0.23 -41.07 16 2 C 0.03 1.31 5.42 85.24 0.46 1.77 16 3 Si 0.99 35.65 29.56 68.60 2.03 37.68 16 4 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 6 H -0.27 -9.21 7.11 99.48 0.71 -8.51 16 7 C -0.48 -23.85 9.03 23.40 0.21 -23.64 16 8 H 0.08 3.95 7.85 -2.91 -0.02 3.93 16 9 C 0.08 4.15 5.55 -21.28 -0.12 4.03 16 10 C -0.21 -9.35 9.74 22.48 0.22 -9.13 16 11 C -0.09 -3.94 8.34 22.11 0.18 -3.75 16 12 C -0.06 -2.55 4.69 22.81 0.11 -2.44 16 13 O -0.26 -10.33 9.95 -30.50 -0.30 -10.63 16 14 C 0.14 4.91 6.63 22.65 0.15 5.06 16 15 C -0.21 -6.83 8.91 22.33 0.20 -6.63 16 16 C -0.05 -1.23 9.14 22.51 0.21 -1.02 16 17 C -0.19 -5.72 5.88 -20.08 -0.12 -5.83 16 18 C 0.59 18.04 8.00 86.72 0.69 18.73 16 19 O -0.59 -22.19 17.14 -4.01 -0.07 -22.26 16 20 N -0.65 -14.30 3.66 -861.96 -3.16 -17.46 16 21 C 0.05 0.62 5.98 83.27 0.50 1.12 16 22 C 0.08 0.77 5.58 31.02 0.17 0.94 16 23 O -0.57 -8.01 13.72 -148.98 -2.04 -10.05 16 24 C 0.10 1.45 8.45 83.19 0.70 2.15 16 25 C -0.03 -0.79 9.58 22.50 0.22 -0.58 16 26 C -0.17 -5.11 9.97 22.33 0.22 -4.89 16 27 C -0.10 -4.68 9.92 22.11 0.22 -4.46 16 28 C -0.16 -8.16 8.62 22.48 0.19 -7.96 16 29 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 30 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.13 4.60 5.98 -2.91 -0.02 4.59 16 33 H 0.16 3.29 4.14 -2.91 -0.01 3.27 16 34 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.09 1.19 6.73 -2.39 -0.02 1.18 16 36 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.40 1.80 9.12 -74.05 -0.68 1.12 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.14 4.04 7.66 -2.91 -0.02 4.02 16 41 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 42 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.12 6.26 6.13 -2.91 -0.02 6.24 16 Total: -1.00 -70.02 366.08 1.50 -68.52 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.40 Total: 31.80 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 4.42 Total: -36.53 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -2.93 Total: -58.53 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -2.42 Total: -42.94 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.68 kcal Total: -70.02 1.50 -68.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340557670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.413 kcal (2) G-P(sol) polarization free energy of solvation -70.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds