Wall clock time and date at job start Tue Mar 31 2020 22:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86798 * 120.00418 * 2 1 4 4 H 1.48493 * 109.47327 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47091 * 300.00029 * 3 2 1 6 6 H 1.48501 * 109.46997 * 59.99970 * 3 2 1 7 7 C 1.40229 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00064 * 197.87172 * 7 2 1 9 9 C 1.41107 * 119.99997 * 17.87511 * 7 2 1 10 10 C 1.40886 * 120.10243 * 204.62349 * 9 7 2 11 11 C 1.36314 * 119.89385 * 180.02562 * 10 9 7 12 12 C 1.40019 * 120.10620 * 359.97438 * 11 10 9 13 13 C 1.47638 * 119.89680 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99979 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99924 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99803 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47104 * 180.02562 * 16 15 13 18 18 C 1.50693 * 109.47048 * 180.02562 * 17 16 15 19 19 C 1.38369 * 119.84679 * 269.72075 * 18 17 16 20 20 C 1.37943 * 120.15468 * 179.72255 * 19 18 17 21 21 C 1.39635 * 119.84219 * 0.57790 * 20 19 18 22 22 C 1.47726 * 120.14890 * 179.68068 * 21 20 19 23 23 O 1.21475 * 120.00001 * 180.02562 * 22 21 20 24 24 O 1.34706 * 119.99902 * 0.02562 * 22 21 20 25 25 C 1.39623 * 119.70078 * 359.69418 * 21 20 19 26 26 C 1.37941 * 119.85233 * 0.02562 * 25 21 20 27 27 C 1.40016 * 120.20639 * 0.25973 * 12 11 10 28 28 C 1.36313 * 120.10696 * 359.47679 * 27 12 11 29 29 H 0.97007 * 120.00058 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.05718 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.95147 * 179.97438 * 11 10 9 32 32 H 0.96994 * 120.00046 * 0.27674 * 15 13 12 33 33 H 1.09004 * 109.46690 * 299.99799 * 16 15 13 34 34 H 1.09000 * 109.47615 * 59.99912 * 16 15 13 35 35 H 1.09000 * 109.46427 * 299.99816 * 17 16 15 36 36 H 1.09000 * 109.47096 * 59.99423 * 17 16 15 37 37 H 1.08006 * 119.92225 * 359.97438 * 19 18 17 38 38 H 1.07995 * 120.08646 * 180.27356 * 20 19 18 39 39 H 0.96708 * 116.99867 * 180.02562 * 24 22 21 40 40 H 1.08003 * 120.07903 * 179.97438 * 25 21 20 41 41 H 1.07997 * 119.93412 * 179.97438 * 26 25 21 42 42 H 1.08001 * 119.94097 * 179.74656 * 27 12 11 43 43 H 1.08001 * 120.05662 * 180.23555 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.7004 1.3463 -0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8818 2.3964 1.2125 7 6 2.0075 -1.2145 -0.0005 8 1 3.0484 -1.2372 0.2865 9 6 1.3530 -2.4068 -0.3762 10 6 1.8266 -3.6495 0.0888 11 6 1.1913 -4.7987 -0.2771 12 6 0.0695 -4.7454 -1.1133 13 6 -0.6146 -5.9930 -1.5072 14 8 -0.2040 -7.0646 -1.1052 15 7 -1.6943 -5.9442 -2.3124 16 6 -2.3735 -7.1822 -2.7029 17 6 -3.5578 -6.8491 -3.6125 18 6 -4.2568 -8.1224 -4.0136 19 6 -3.8668 -8.7900 -5.1611 20 6 -4.4984 -9.9592 -5.5311 21 6 -5.5416 -10.4623 -4.7511 22 6 -6.2275 -11.7100 -5.1449 23 8 -7.1350 -12.1450 -4.4645 24 8 -5.8465 -12.3655 -6.2583 25 6 -5.9338 -9.7805 -3.5975 26 6 -5.2897 -8.6155 -3.2360 27 6 -0.4019 -3.5131 -1.5819 28 6 0.2235 -2.3582 -1.2170 29 1 -0.4850 0.8401 0.0004 30 1 2.6920 -3.6917 0.7335 31 1 1.5538 -5.7519 0.0784 32 1 -2.0194 -5.0897 -2.6364 33 1 -1.6753 -7.8266 -3.2372 34 1 -2.7329 -7.6962 -1.8114 35 1 -4.2559 -6.2045 -3.0785 36 1 -3.1980 -6.3353 -4.5039 37 1 -3.0633 -8.3969 -5.7663 38 1 -4.1902 -10.4817 -6.4246 39 1 -6.3252 -13.1772 -6.4755 40 1 -6.7402 -10.1639 -2.9899 41 1 -5.5922 -8.0869 -2.3441 42 1 -1.2651 -3.4773 -2.2300 43 1 -0.1431 -1.4078 -1.5759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345810282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:05 Heat of formation + Delta-G solvation = -99.868579 kcal Electronic energy + Delta-G solvation = -26359.204690 eV Core-core repulsion = 22332.980447 eV Total energy + Delta-G solvation = -4026.224244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.79487 -39.46539 -38.94802 -37.17697 -36.49054 -35.23180 -33.90151 -32.83752 -31.41149 -30.42594 -29.48234 -28.90740 -26.13057 -24.73909 -23.20334 -22.67922 -21.73801 -21.09933 -20.85941 -19.63365 -18.53978 -17.83013 -17.56119 -16.85893 -16.06768 -15.98552 -15.85680 -15.46501 -15.14961 -14.90409 -14.63037 -14.11942 -13.94758 -13.89919 -13.49823 -13.23990 -13.20817 -13.19123 -12.75650 -12.20302 -12.04130 -11.98258 -11.90501 -11.82069 -11.70876 -11.40556 -11.31245 -11.21226 -11.00124 -10.96509 -10.67398 -10.07109 -9.59720 -9.39080 -9.38493 -9.25848 -8.98997 -8.66096 -7.75393 -7.57443 -7.06957 -4.63312 0.27753 0.98896 2.14583 2.19682 2.60897 2.88093 2.93063 2.98650 3.00804 3.35206 3.70955 3.71688 3.83785 4.36083 4.50225 4.53622 4.57062 4.69092 4.89932 4.92359 4.99562 5.17938 5.31351 5.51472 5.53681 5.61512 5.79718 5.80468 5.84526 5.95158 6.00498 6.06063 6.13803 6.21151 6.29181 6.45133 6.73947 6.79771 6.87333 7.01906 7.10321 7.40600 7.47944 7.61866 7.75509 7.83175 8.04093 8.19019 8.36913 8.60158 8.72208 9.03572 9.85026 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.030350 B = 0.001594 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.343686 B =17566.179752 C =17983.998285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.285 4.285 13 C 0.572 3.428 14 O -0.575 6.575 15 N -0.744 5.744 16 C 0.130 3.870 17 C -0.101 4.101 18 C -0.035 4.035 19 C -0.128 4.128 20 C -0.058 4.058 21 C -0.138 4.138 22 C 0.528 3.472 23 O -0.516 6.516 24 O -0.513 6.513 25 C -0.050 4.050 26 C -0.126 4.126 27 C -0.063 4.063 28 C -0.178 4.178 29 H 0.286 0.714 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.398 0.602 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.414 0.586 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.089 0.911 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.296 -11.518 -11.841 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.124 3.876 10 C -0.258 4.258 11 C -0.041 4.041 12 C -0.290 4.290 13 C 0.367 3.633 14 O -0.457 6.457 15 N -0.398 5.398 16 C 0.006 3.994 17 C -0.139 4.139 18 C -0.036 4.036 19 C -0.146 4.146 20 C -0.076 4.076 21 C -0.139 4.139 22 C 0.373 3.627 23 O -0.406 6.406 24 O -0.324 6.324 25 C -0.069 4.069 26 C -0.144 4.144 27 C -0.082 4.082 28 C -0.197 4.197 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.233 0.767 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.273 0.727 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.107 0.893 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.256 -11.887 -11.260 19.870 hybrid contribution -0.311 0.608 -0.276 0.737 sum -11.568 -11.279 -11.537 19.852 Atomic orbital electron populations 1.69750 1.07932 1.29977 1.31794 1.26104 0.94811 1.01917 0.91870 0.86170 0.81140 0.80175 0.78873 1.18037 1.19378 1.19656 1.19890 0.98464 0.91188 1.37383 0.89651 1.17802 0.90391 0.92193 0.87173 1.20719 1.04613 0.92632 1.07842 1.20369 0.92911 0.97162 0.93669 1.18890 1.04560 0.91002 1.14542 1.18590 0.78576 0.89651 0.76511 1.90643 1.66484 1.31721 1.56846 1.45896 1.32039 1.08844 1.52976 1.21095 0.92628 0.87888 0.97779 1.20944 0.97393 0.94561 1.00953 1.20090 0.94179 0.95577 0.93728 1.21134 1.00742 0.95522 0.97242 1.21451 0.92906 0.94837 0.98383 1.19026 1.00718 0.94964 0.99218 1.20950 0.80391 0.83720 0.77617 1.90894 1.29528 1.67309 1.52869 1.84559 1.62843 1.41760 1.43282 1.21260 0.98124 0.93495 0.93988 1.21097 0.96462 0.96373 1.00444 1.20465 0.97374 0.92569 0.97784 1.20974 0.99916 0.96908 1.01945 0.90266 0.88371 0.88106 0.76701 0.91818 0.91782 0.89636 0.89656 0.84769 0.84374 0.72704 0.84422 0.84613 0.89328 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.12 10.95 55.56 0.61 -17.51 16 2 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 3 Si 0.91 16.94 29.60 -169.99 -5.03 11.90 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.27 -4.90 7.11 56.52 0.40 -4.49 16 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.44 -10.81 9.04 -37.75 -0.34 -11.15 16 8 H 0.09 2.00 7.91 -52.49 -0.42 1.59 16 9 C 0.13 3.20 5.58 -106.80 -0.60 2.60 16 10 C -0.24 -5.70 9.73 -39.27 -0.38 -6.08 16 11 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 12 C -0.29 -6.37 5.89 -104.73 -0.62 -6.99 16 13 C 0.57 11.83 7.76 -12.42 -0.10 11.73 16 14 O -0.57 -13.53 16.32 5.28 0.09 -13.45 16 15 N -0.74 -11.58 5.50 -61.31 -0.34 -11.92 16 16 C 0.13 1.65 5.66 -4.04 -0.02 1.63 16 17 C -0.10 -0.88 5.45 -27.88 -0.15 -1.04 16 18 C -0.04 -0.30 5.14 -104.53 -0.54 -0.84 16 19 C -0.13 -1.04 9.68 -39.64 -0.38 -1.42 16 20 C -0.06 -0.47 9.62 -39.17 -0.38 -0.84 16 21 C -0.14 -1.28 5.87 -104.98 -0.62 -1.90 16 22 C 0.53 5.00 8.27 34.61 0.29 5.29 16 23 O -0.52 -6.30 17.13 -19.25 -0.33 -6.63 16 24 O -0.51 -3.30 12.68 -40.51 -0.51 -3.82 16 25 C -0.05 -0.46 9.60 -39.17 -0.38 -0.84 16 26 C -0.13 -1.08 9.68 -39.64 -0.38 -1.46 16 27 C -0.06 -1.34 9.47 -39.61 -0.38 -1.72 16 28 C -0.18 -4.26 8.63 -39.27 -0.34 -4.60 16 29 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 30 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 31 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 32 H 0.40 5.36 6.47 -40.82 -0.26 5.10 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 38 H 0.14 0.89 7.61 -52.49 -0.40 0.49 16 39 H 0.41 0.84 9.11 45.56 0.42 1.26 16 40 H 0.14 1.18 7.65 -52.48 -0.40 0.78 16 41 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.09 1.57 6.37 -52.49 -0.33 1.24 16 43 H 0.12 2.90 6.15 -52.49 -0.32 2.58 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -31.50 377.07 -9.82 -41.32 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.21 Total: 11.32 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -5.78 Total: -16.90 kcal Atomic # 7 Polarization: -29.70 SS G_CDS: 0.27 Total: -29.43 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.76 Total: -23.89 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.50 -9.82 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345810282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.552 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds