Wall clock time and date at job start Tue Mar 31 2020 22:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86798 * 120.00418 * 2 1 4 4 H 1.48493 * 109.47327 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47091 * 300.00029 * 3 2 1 6 6 H 1.48501 * 109.46997 * 59.99970 * 3 2 1 7 7 C 1.40229 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00064 * 197.87172 * 7 2 1 9 9 C 1.41107 * 119.99997 * 17.87511 * 7 2 1 10 10 C 1.40886 * 120.10243 * 204.62349 * 9 7 2 11 11 C 1.36314 * 119.89385 * 180.02562 * 10 9 7 12 12 C 1.40019 * 120.10620 * 359.97438 * 11 10 9 13 13 C 1.47638 * 119.89680 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99979 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99924 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99803 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47104 * 180.02562 * 16 15 13 18 18 C 1.50693 * 109.47048 * 180.02562 * 17 16 15 19 19 C 1.38369 * 119.84679 * 269.72075 * 18 17 16 20 20 C 1.37943 * 120.15468 * 179.72255 * 19 18 17 21 21 C 1.39635 * 119.84219 * 0.57790 * 20 19 18 22 22 C 1.47726 * 120.14890 * 179.68068 * 21 20 19 23 23 O 1.21475 * 120.00001 * 180.02562 * 22 21 20 24 24 O 1.34706 * 119.99902 * 0.02562 * 22 21 20 25 25 C 1.39623 * 119.70078 * 359.69418 * 21 20 19 26 26 C 1.37941 * 119.85233 * 0.02562 * 25 21 20 27 27 C 1.40016 * 120.20639 * 0.25973 * 12 11 10 28 28 C 1.36313 * 120.10696 * 359.47679 * 27 12 11 29 29 H 0.97007 * 120.00058 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.05718 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.95147 * 179.97438 * 11 10 9 32 32 H 0.96994 * 120.00046 * 0.27674 * 15 13 12 33 33 H 1.09004 * 109.46690 * 299.99799 * 16 15 13 34 34 H 1.09000 * 109.47615 * 59.99912 * 16 15 13 35 35 H 1.09000 * 109.46427 * 299.99816 * 17 16 15 36 36 H 1.09000 * 109.47096 * 59.99423 * 17 16 15 37 37 H 1.08006 * 119.92225 * 359.97438 * 19 18 17 38 38 H 1.07995 * 120.08646 * 180.27356 * 20 19 18 39 39 H 0.96708 * 116.99867 * 180.02562 * 24 22 21 40 40 H 1.08003 * 120.07903 * 179.97438 * 25 21 20 41 41 H 1.07997 * 119.93412 * 179.97438 * 26 25 21 42 42 H 1.08001 * 119.94097 * 179.74656 * 27 12 11 43 43 H 1.08001 * 120.05662 * 180.23555 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.7004 1.3463 -0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8818 2.3964 1.2125 7 6 2.0075 -1.2145 -0.0005 8 1 3.0484 -1.2372 0.2865 9 6 1.3530 -2.4068 -0.3762 10 6 1.8266 -3.6495 0.0888 11 6 1.1913 -4.7987 -0.2771 12 6 0.0695 -4.7454 -1.1133 13 6 -0.6146 -5.9930 -1.5072 14 8 -0.2040 -7.0646 -1.1052 15 7 -1.6943 -5.9442 -2.3124 16 6 -2.3735 -7.1822 -2.7029 17 6 -3.5578 -6.8491 -3.6125 18 6 -4.2568 -8.1224 -4.0136 19 6 -3.8668 -8.7900 -5.1611 20 6 -4.4984 -9.9592 -5.5311 21 6 -5.5416 -10.4623 -4.7511 22 6 -6.2275 -11.7100 -5.1449 23 8 -7.1350 -12.1450 -4.4645 24 8 -5.8465 -12.3655 -6.2583 25 6 -5.9338 -9.7805 -3.5975 26 6 -5.2897 -8.6155 -3.2360 27 6 -0.4019 -3.5131 -1.5819 28 6 0.2235 -2.3582 -1.2170 29 1 -0.4850 0.8401 0.0004 30 1 2.6920 -3.6917 0.7335 31 1 1.5538 -5.7519 0.0784 32 1 -2.0194 -5.0897 -2.6364 33 1 -1.6753 -7.8266 -3.2372 34 1 -2.7329 -7.6962 -1.8114 35 1 -4.2559 -6.2045 -3.0785 36 1 -3.1980 -6.3353 -4.5039 37 1 -3.0633 -8.3969 -5.7663 38 1 -4.1902 -10.4817 -6.4246 39 1 -6.3252 -13.1772 -6.4755 40 1 -6.7402 -10.1639 -2.9899 41 1 -5.5922 -8.0869 -2.3441 42 1 -1.2651 -3.4773 -2.2300 43 1 -0.1431 -1.4078 -1.5759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345810282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:04 Heat of formation + Delta-G solvation = -117.967323 kcal Electronic energy + Delta-G solvation = -26359.989511 eV Core-core repulsion = 22332.980447 eV Total energy + Delta-G solvation = -4027.009064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47853 -40.78482 -39.91681 -38.88527 -37.15280 -36.40941 -35.65578 -33.88665 -32.06485 -32.01845 -31.28027 -29.94804 -27.71615 -25.75557 -23.97865 -23.64706 -23.16042 -22.65540 -21.76934 -21.17010 -19.35287 -19.19045 -18.56876 -18.34877 -17.36280 -16.92383 -16.70092 -16.67481 -16.13508 -15.88932 -15.73540 -15.50997 -15.42773 -14.99649 -14.66239 -14.46759 -14.34448 -14.12786 -14.01137 -13.79434 -13.62312 -13.20625 -12.85742 -12.84245 -12.65785 -12.63208 -12.58548 -12.46307 -12.35248 -11.92769 -11.75718 -11.73273 -11.35518 -11.11000 -10.72110 -10.07792 -9.99374 -9.90706 -9.55221 -9.38586 -8.78440 -6.46859 -0.40455 0.36238 0.45925 1.17054 1.39825 1.43322 1.44692 1.56408 2.03506 2.14016 2.19215 2.38819 2.74488 2.80122 3.70834 3.72641 3.79997 3.96646 4.02637 4.03813 4.24714 4.33531 4.34919 4.37823 4.46351 4.49274 4.59497 4.81759 4.89332 4.94283 5.04178 5.05465 5.10093 5.18116 5.21186 5.31892 5.32366 5.50846 5.56309 5.57496 5.61619 5.82913 5.84586 5.96405 6.01250 6.24787 6.55807 6.74014 6.78908 6.90912 6.91513 7.46888 8.16932 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.030350 B = 0.001594 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.343686 B =17566.179752 C =17983.998285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.259 1.259 6 H -0.265 1.265 7 C -0.474 4.474 8 H 0.083 0.917 9 C 0.100 3.900 10 C -0.254 4.254 11 C -0.035 4.035 12 C -0.294 4.294 13 C 0.571 3.429 14 O -0.608 6.608 15 N -0.724 5.724 16 C 0.129 3.871 17 C -0.088 4.088 18 C -0.042 4.042 19 C -0.129 4.129 20 C -0.056 4.056 21 C -0.153 4.153 22 C 0.532 3.468 23 O -0.552 6.552 24 O -0.504 6.504 25 C -0.062 4.062 26 C -0.129 4.129 27 C -0.052 4.052 28 C -0.198 4.198 29 H 0.297 0.703 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.411 0.589 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.433 0.567 40 H 0.135 0.865 41 H 0.147 0.853 42 H 0.129 0.871 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.027 -10.672 -13.521 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.183 1.183 6 H -0.189 1.189 7 C -0.501 4.501 8 H 0.102 0.898 9 C 0.097 3.903 10 C -0.273 4.273 11 C -0.054 4.054 12 C -0.298 4.298 13 C 0.365 3.635 14 O -0.493 6.493 15 N -0.376 5.376 16 C 0.006 3.994 17 C -0.125 4.125 18 C -0.043 4.043 19 C -0.147 4.147 20 C -0.074 4.074 21 C -0.154 4.154 22 C 0.379 3.621 23 O -0.445 6.445 24 O -0.317 6.317 25 C -0.081 4.081 26 C -0.147 4.147 27 C -0.071 4.071 28 C -0.217 4.217 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.248 0.752 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.171 0.829 38 H 0.173 0.827 39 H 0.295 0.705 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.147 0.853 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.024 -11.058 -12.988 20.870 hybrid contribution -0.142 0.210 0.194 0.319 sum -12.166 -10.848 -12.794 20.722 Atomic orbital electron populations 1.69759 1.09171 1.31568 1.31589 1.26896 0.95548 1.04729 0.90832 0.85081 0.79432 0.75587 0.79263 1.18175 1.18346 1.18920 1.20130 0.98726 0.92290 1.38973 0.89846 1.18159 0.91388 0.92794 0.87996 1.20845 1.05188 0.92822 1.08479 1.20519 0.93655 0.96948 0.94266 1.19196 1.04295 0.92336 1.13977 1.18391 0.79631 0.88387 0.77138 1.90626 1.67778 1.32518 1.58377 1.45716 1.30245 1.10710 1.50940 1.21245 0.93678 0.86355 0.98134 1.20843 0.95855 0.94922 1.00872 1.20141 0.94343 0.95695 0.94131 1.21396 1.00890 0.95274 0.97164 1.21642 0.92253 0.94876 0.98640 1.19208 1.01361 0.95195 0.99666 1.21022 0.79688 0.83713 0.77704 1.90878 1.31132 1.68298 1.54145 1.84515 1.62758 1.42667 1.41800 1.21351 0.98448 0.93969 0.94295 1.21268 0.96420 0.96192 1.00828 1.20752 0.97835 0.91269 0.97208 1.21020 1.00419 0.97548 1.02700 0.89158 0.88011 0.88111 0.75188 0.92396 0.92823 0.88312 0.87823 0.82937 0.82737 0.70470 0.84673 0.83497 0.85335 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.23 10.95 21.87 0.24 -36.99 16 2 C 0.04 1.78 5.14 85.35 0.44 2.22 16 3 Si 0.99 34.11 29.60 68.60 2.03 36.14 16 4 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 6 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 7 C -0.47 -23.64 9.04 23.46 0.21 -23.42 16 8 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 9 C 0.10 5.11 5.58 -21.28 -0.12 4.99 16 10 C -0.25 -12.48 9.73 22.47 0.22 -12.26 16 11 C -0.03 -1.64 9.52 22.25 0.21 -1.43 16 12 C -0.29 -12.97 5.89 -19.93 -0.12 -13.08 16 13 C 0.57 23.02 7.76 86.73 0.67 23.69 16 14 O -0.61 -28.48 16.32 -4.01 -0.07 -28.55 16 15 N -0.72 -20.83 5.50 -466.14 -2.57 -23.40 16 16 C 0.13 3.00 5.66 86.38 0.49 3.49 16 17 C -0.09 -1.25 5.45 29.85 0.16 -1.09 16 18 C -0.04 -0.64 5.14 -19.80 -0.10 -0.74 16 19 C -0.13 -1.76 9.68 22.23 0.22 -1.55 16 20 C -0.06 -0.79 9.62 22.54 0.22 -0.58 16 21 C -0.15 -2.69 5.87 -20.10 -0.12 -2.81 16 22 C 0.53 9.69 8.27 70.33 0.58 10.27 16 23 O -0.55 -13.47 17.13 19.92 0.34 -13.13 16 24 O -0.50 -5.67 12.68 -56.16 -0.71 -6.38 16 25 C -0.06 -1.10 9.60 22.53 0.22 -0.88 16 26 C -0.13 -2.03 9.68 22.23 0.22 -1.81 16 27 C -0.05 -2.16 9.47 22.25 0.21 -1.95 16 28 C -0.20 -9.45 8.63 22.47 0.19 -9.25 16 29 H 0.30 12.23 8.29 -92.70 -0.77 11.46 16 30 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.10 4.68 7.63 -2.91 -0.02 4.66 16 32 H 0.41 9.68 6.47 -92.71 -0.60 9.08 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.10 1.20 8.08 -2.39 -0.02 1.18 16 36 H 0.10 1.16 8.08 -2.39 -0.02 1.14 16 37 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.15 1.60 7.61 -2.91 -0.02 1.58 16 39 H 0.43 1.05 9.11 -74.05 -0.67 0.37 16 40 H 0.14 2.36 7.65 -2.91 -0.02 2.34 16 41 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.13 4.18 6.37 -2.91 -0.02 4.16 16 43 H 0.11 5.54 6.15 -2.91 -0.02 5.52 16 Total: -1.00 -69.15 377.07 2.87 -66.28 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.20 Total: 32.23 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 3.80 Total: -26.20 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -2.33 Total: -60.38 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.44 Total: -48.06 kcal Atomic # 14 Polarization: 34.11 SS G_CDS: 2.03 Total: 36.14 kcal Total: -69.15 2.87 -66.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345810282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.690 kcal (2) G-P(sol) polarization free energy of solvation -69.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds