Wall clock time and date at job start Tue Mar 31 2020 22:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00169 * 2 1 4 4 H 1.48493 * 109.47048 * 269.99899 * 3 2 1 5 5 H 1.48501 * 109.46968 * 29.99647 * 3 2 1 6 6 H 1.48500 * 109.47220 * 149.99900 * 3 2 1 7 7 C 1.37879 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00133 * 186.18372 * 7 2 1 9 9 C 1.50700 * 119.99626 * 6.46188 * 7 2 1 10 10 C 1.52998 * 115.54608 * 274.91107 * 9 7 2 11 11 S 1.81395 * 109.47323 * 294.69389 * 10 9 7 12 12 O 1.42101 * 110.54573 * 293.06471 * 11 10 9 13 13 O 1.42101 * 110.54320 * 69.81654 * 11 10 9 14 14 N 1.65607 * 104.45221 * 181.44147 * 11 10 9 15 15 C 1.46497 * 119.99844 * 65.00033 * 14 11 10 16 16 H 1.09007 * 109.47107 * 334.99765 * 15 14 11 17 17 C 1.52998 * 109.47194 * 95.00452 * 15 14 11 18 18 O 1.42896 * 109.47226 * 64.99586 * 17 15 14 19 19 C 1.53001 * 109.47083 * 215.00489 * 15 14 11 20 20 C 1.50693 * 109.47384 * 64.99810 * 19 15 14 21 21 C 1.38237 * 120.00255 * 269.73118 * 20 19 15 22 22 C 1.38233 * 120.00212 * 179.76871 * 21 20 19 23 23 C 1.38239 * 119.99904 * 0.49926 * 22 21 20 24 24 C 1.38237 * 120.00048 * 359.75447 * 23 22 21 25 25 C 1.38239 * 119.99834 * 359.97438 * 24 23 22 26 26 C 1.53001 * 117.49840 * 129.24541 * 9 7 2 27 27 C 1.52992 * 117.50102 * 60.58333 * 9 7 2 28 28 H 0.97000 * 120.00006 * 5.09144 * 1 2 3 29 29 H 1.09002 * 109.47254 * 54.69691 * 10 9 7 30 30 H 1.09006 * 109.46763 * 174.69604 * 10 9 7 31 31 H 0.97000 * 120.00071 * 245.00896 * 14 11 10 32 32 H 1.09000 * 109.46874 * 184.99991 * 17 15 14 33 33 H 1.09003 * 109.47013 * 304.99568 * 17 15 14 34 34 H 0.96700 * 113.99860 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.47409 * 184.99959 * 19 15 14 36 36 H 1.09003 * 109.46997 * 305.00114 * 19 15 14 37 37 H 1.07996 * 120.00179 * 359.97438 * 21 20 19 38 38 H 1.07998 * 120.00406 * 180.23285 * 22 21 20 39 39 H 1.07994 * 120.00195 * 179.72775 * 23 22 21 40 40 H 1.08001 * 120.00034 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.99700 * 179.97438 * 25 24 23 42 42 H 1.09000 * 117.49734 * 359.97438 * 26 9 7 43 43 H 1.08994 * 117.49669 * 145.01689 * 26 9 7 44 44 H 1.09001 * 117.50049 * 214.97714 * 27 9 7 45 45 H 1.09007 * 117.50149 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0798 -1.1967 0.1013 9 6 1.2581 -2.4950 -0.1458 10 6 0.6953 -3.0821 1.1501 11 16 2.0629 -3.5455 2.2481 12 8 2.8018 -4.6262 1.6955 13 8 2.7193 -2.3867 2.7434 14 7 1.3222 -4.1957 3.5790 15 6 0.5538 -5.4369 3.4565 16 1 0.2041 -5.5479 2.4300 17 6 1.4437 -6.6260 3.8237 18 8 1.8071 -6.5410 5.2031 19 6 -0.6481 -5.3881 4.4021 20 6 -1.5868 -4.2932 3.9652 21 6 -1.4390 -3.0142 4.4686 22 6 -2.2972 -2.0088 4.0642 23 6 -3.3097 -2.2847 3.1644 24 6 -3.4608 -3.5648 2.6650 25 6 -2.5991 -4.5690 3.0651 26 6 1.7519 -3.4769 -1.2102 27 6 0.4481 -2.7046 -1.4266 28 1 -0.4850 0.8367 -0.0745 29 1 0.0689 -2.3391 1.6437 30 1 0.0989 -3.9651 0.9200 31 1 1.3971 -3.7546 4.4397 32 1 0.9003 -7.5544 3.6476 33 1 2.3438 -6.6097 3.2091 34 1 2.3730 -7.2642 5.5060 35 1 -1.1693 -6.3451 4.3769 36 1 -0.3040 -5.1882 5.4169 37 1 -0.6510 -2.7998 5.1752 38 1 -2.1794 -1.0088 4.4546 39 1 -3.9829 -1.5002 2.8518 40 1 -4.2521 -3.7804 1.9623 41 1 -2.7175 -5.5692 2.6753 42 1 2.6163 -3.1817 -1.8050 43 1 1.6753 -4.5411 -0.9875 44 1 -0.4857 -3.2611 -1.3462 45 1 0.4546 -1.9013 -2.1634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346437654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:40 Heat of formation + Delta-G solvation = -104.307035 kcal Electronic energy + Delta-G solvation = -29067.021190 eV Core-core repulsion = 25176.048432 eV Total energy + Delta-G solvation = -3890.972758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.31354 -38.56708 -38.55422 -37.83278 -36.76670 -35.98402 -34.06534 -32.97140 -31.67145 -29.98431 -29.82955 -27.47278 -26.84802 -23.39029 -22.99631 -22.80227 -21.73858 -21.49092 -20.23120 -18.74340 -18.33072 -17.90658 -17.70482 -17.14569 -16.82082 -16.58828 -16.17128 -15.95669 -15.70786 -15.58068 -15.30786 -14.96302 -14.70075 -14.24003 -14.09898 -13.75896 -13.68006 -13.55696 -13.37106 -13.14734 -12.92507 -12.89894 -12.83525 -12.81109 -12.48076 -12.35235 -12.29347 -12.17133 -11.90676 -11.79743 -11.72335 -11.52672 -10.85923 -10.80045 -10.54957 -10.42489 -9.85723 -9.70362 -9.46925 -8.18145 -6.31853 -0.47365 0.55106 0.60830 1.35619 1.38657 1.49022 2.04230 2.40032 2.95288 2.98829 3.09425 3.36673 3.46141 3.48539 3.76340 3.97524 4.05896 4.10333 4.23296 4.26270 4.30201 4.37725 4.45245 4.48787 4.52159 4.62043 4.62488 4.74333 4.85123 4.87115 4.92055 4.97780 5.08266 5.17892 5.22863 5.27575 5.36828 5.49263 5.59879 5.66660 5.72870 5.74436 5.81621 6.18428 6.23724 6.23806 6.73712 7.01174 7.40092 8.88809 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010417 B = 0.005554 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.217177 B = 5040.242905 C = 6273.437825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.044 3.956 3 Si 0.929 3.071 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.530 4.530 8 H 0.045 0.955 9 C 0.012 3.988 10 C -0.541 4.541 11 S 2.621 3.379 12 O -0.992 6.992 13 O -0.999 6.999 14 N -1.104 6.104 15 C 0.152 3.848 16 H 0.100 0.900 17 C 0.058 3.942 18 O -0.580 6.580 19 C -0.069 4.069 20 C -0.088 4.088 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.198 4.198 27 C -0.135 4.135 28 H 0.263 0.737 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.419 0.581 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.394 0.606 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 -14.642 8.796 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.159 4.159 3 Si 0.754 3.246 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.063 0.937 9 C 0.010 3.990 10 C -0.673 4.673 11 S 2.718 3.282 12 O -0.981 6.981 13 O -0.989 6.989 14 N -0.864 5.864 15 C 0.044 3.956 16 H 0.118 0.882 17 C -0.021 4.021 18 O -0.387 6.387 19 C -0.107 4.107 20 C -0.088 4.088 21 C -0.145 4.145 22 C -0.153 4.153 23 C -0.153 4.153 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.235 4.235 27 C -0.174 4.174 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.254 0.746 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.243 0.757 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.166 0.834 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.105 0.895 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.929 -13.996 8.575 17.817 hybrid contribution 0.186 1.402 0.032 1.414 sum -6.743 -12.594 8.607 16.679 Atomic orbital electron populations 1.70061 1.06344 1.27588 1.48157 1.25446 0.95576 1.01250 0.93610 0.85997 0.79241 0.80684 0.78636 1.19237 1.20213 1.20328 1.20690 0.92593 0.90818 1.52683 0.93676 1.18381 1.00470 0.94160 0.85975 1.29779 1.16759 1.08944 1.11859 1.04426 0.76524 0.72707 0.74591 1.93455 1.69591 1.54963 1.80134 1.93483 1.73974 1.52433 1.79025 1.55489 1.70222 1.35642 1.25020 1.21148 0.90980 0.82574 1.00851 0.88201 1.22759 0.98361 0.97813 0.83174 1.86407 1.72968 1.54069 1.25290 1.20773 0.92514 0.97904 0.99541 1.20025 0.96606 0.94821 0.97353 1.21230 0.99067 0.93293 1.00941 1.21335 0.96008 0.99454 0.98532 1.21333 0.98747 0.97674 0.97582 1.21392 1.00136 0.93038 0.99771 1.21358 0.94903 1.00396 0.97522 1.23273 0.98409 0.96956 1.04900 1.22464 0.93441 1.00756 1.00719 0.92762 0.86479 0.85588 0.74622 0.89444 0.93786 0.75672 0.87010 0.89425 0.85976 0.86458 0.85978 0.84589 0.83431 0.89969 0.88116 0.89473 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.10 12.93 21.45 0.28 -48.82 16 2 C 0.04 2.46 5.39 84.66 0.46 2.92 16 3 Si 0.93 44.79 29.55 68.60 2.03 46.81 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.53 -29.84 7.98 25.60 0.20 -29.64 16 8 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 9 C 0.01 0.60 1.33 -52.93 -0.07 0.53 16 10 C -0.54 -22.50 5.83 71.98 0.42 -22.08 16 11 S 2.62 106.49 5.17 -56.49 -0.29 106.20 16 12 O -0.99 -41.98 17.05 -127.65 -2.18 -44.15 16 13 O -1.00 -50.19 17.49 -127.65 -2.23 -52.42 16 14 N -1.10 -32.62 4.70 -169.39 -0.80 -33.42 16 15 C 0.15 3.37 2.46 44.99 0.11 3.48 16 16 H 0.10 2.06 7.12 -2.38 -0.02 2.05 16 17 C 0.06 1.12 6.88 71.98 0.50 1.62 16 18 O -0.58 -10.62 12.83 -148.98 -1.91 -12.53 16 19 C -0.07 -1.26 4.67 29.85 0.14 -1.12 16 20 C -0.09 -2.02 4.95 -19.87 -0.10 -2.11 16 21 C -0.13 -3.41 9.32 22.27 0.21 -3.21 16 22 C -0.14 -3.92 10.05 22.27 0.22 -3.70 16 23 C -0.14 -3.73 10.05 22.27 0.22 -3.51 16 24 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 25 C -0.12 -2.68 9.70 22.27 0.22 -2.47 16 26 C -0.20 -8.44 9.96 30.62 0.30 -8.13 16 27 C -0.13 -6.00 9.43 30.62 0.29 -5.71 16 28 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 29 H 0.12 5.35 8.14 -2.39 -0.02 5.33 16 30 H 0.13 4.26 7.35 -2.39 -0.02 4.24 16 31 H 0.42 11.71 8.71 -96.74 -0.84 10.87 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 1.06 7.36 -2.39 -0.02 1.04 16 34 H 0.39 3.89 9.12 -74.06 -0.68 3.21 16 35 H 0.11 1.40 8.09 -2.39 -0.02 1.38 16 36 H 0.09 1.65 7.67 -2.39 -0.02 1.63 16 37 H 0.12 3.05 7.97 -2.91 -0.02 3.03 16 38 H 0.12 3.27 8.06 -2.91 -0.02 3.24 16 39 H 0.12 3.10 8.06 -2.91 -0.02 3.07 16 40 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 43 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 44 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 45 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -74.25 389.70 -2.27 -76.53 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.51 Total: 37.74 kcal Atomic # 6 Polarization: -79.28 SS G_CDS: 3.35 Total: -75.93 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -0.52 Total: -82.24 kcal Atomic # 8 Polarization: -102.79 SS G_CDS: -6.32 Total: -109.11 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 106.49 SS G_CDS: -0.29 Total: 106.20 kcal Total: -74.25 -2.27 -76.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346437654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.779 kcal (2) G-P(sol) polarization free energy of solvation -74.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds