Wall clock time and date at job start Tue Mar 31 2020 22:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00000 * 2 1 4 4 N 1.46499 * 109.46974 * 125.00048 * 3 2 1 5 5 C 1.34774 * 119.99728 * 179.97438 * 4 3 2 6 6 O 1.21542 * 120.00088 * 0.02562 * 5 4 3 7 7 N 1.34785 * 120.00092 * 180.02562 * 5 4 3 8 8 C 1.34774 * 120.00092 * 179.97438 * 7 5 4 9 9 O 1.21234 * 120.00252 * 0.02562 * 8 7 5 10 10 C 1.50699 * 119.99589 * 180.02562 * 8 7 5 11 11 H 1.08992 * 109.47201 * 40.00766 * 10 8 7 12 12 C 1.52997 * 109.47336 * 280.00101 * 10 8 7 13 13 S 1.81000 * 109.46643 * 160.00617 * 10 8 7 14 14 C 1.76206 * 99.99929 * 185.00197 * 13 10 8 15 15 N 1.32386 * 126.25881 * 359.68621 * 14 13 10 16 16 N 1.28506 * 110.20485 * 179.81940 * 15 14 13 17 17 C 1.33098 * 109.74820 * 0.45145 * 16 15 14 18 18 C 1.39778 * 126.56991 * 179.74754 * 17 16 15 19 19 H 1.07994 * 119.99946 * 179.97438 * 18 17 16 20 20 C 1.40082 * 119.99604 * 359.97438 * 18 17 16 21 21 N 1.30818 * 120.00124 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99583 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47219 * 90.00498 * 22 20 18 24 24 H 1.48510 * 109.46915 * 209.99870 * 22 20 18 25 25 H 1.48493 * 109.47418 * 329.99601 * 22 20 18 26 26 N 1.36671 * 126.25691 * 179.97438 * 14 13 10 27 27 C 1.46500 * 127.15506 * 359.96389 * 26 14 13 28 28 H 1.08001 * 119.99908 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.00373 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.99863 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46717 * 5.00568 * 3 2 1 32 32 H 1.08993 * 109.47343 * 245.00599 * 3 2 1 33 33 H 0.96997 * 119.99869 * 0.02562 * 4 3 2 34 34 H 0.96997 * 119.99505 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.47446 * 180.02562 * 12 10 8 36 36 H 1.08992 * 109.47518 * 300.00470 * 12 10 8 37 37 H 1.09002 * 109.46905 * 60.00506 * 12 10 8 38 38 H 0.96997 * 119.99973 * 180.02562 * 21 20 18 39 39 H 1.09003 * 109.46805 * 90.02725 * 27 26 14 40 40 H 1.08995 * 109.47171 * 210.02204 * 27 26 14 41 41 H 1.08992 * 109.46873 * 330.02528 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4086 1.3328 6 8 3.7150 3.3575 0.5761 7 7 4.6352 2.4330 2.3735 8 6 5.4208 3.5095 2.5746 9 8 5.3570 4.4561 1.8198 10 6 6.3785 3.5365 3.7378 11 1 6.8367 2.5544 3.8540 12 6 5.6192 3.8997 5.0154 13 16 7.6665 4.7705 3.4302 14 6 8.6996 4.4899 4.8297 15 7 8.4946 3.6002 5.7884 16 7 9.4417 3.6557 6.6552 17 6 10.3144 4.5987 6.3081 18 6 11.4727 4.9581 7.0031 19 1 12.1090 5.7433 6.6227 20 6 11.8081 4.2995 8.1931 21 7 11.0370 3.3486 8.6542 22 14 13.3556 4.7802 9.1224 23 1 13.0342 5.8527 10.0979 24 1 13.8867 3.5966 9.8452 25 1 14.3761 5.2731 8.1629 26 7 9.8561 5.1548 5.1270 27 6 10.4809 6.2319 4.3551 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 3.0450 0.5744 1.7351 34 1 4.6865 1.6756 2.9771 35 1 6.3120 3.9196 5.8567 36 1 5.1610 4.8817 4.8991 37 1 4.8435 3.1565 5.2006 38 1 11.2690 2.8929 9.4784 39 1 10.0996 7.1935 4.6988 40 1 11.5614 6.1989 4.4942 41 1 10.2465 6.1046 3.2983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357070418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:15 Heat of formation + Delta-G solvation = 35.466600 kcal Electronic energy + Delta-G solvation = -25893.403644 eV Core-core repulsion = 21937.244333 eV Total energy + Delta-G solvation = -3956.159311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.29649 -40.55997 -38.72949 -36.10517 -34.80009 -33.78259 -33.43978 -33.08295 -32.62599 -29.32029 -26.97628 -26.51180 -25.56925 -24.87055 -22.19041 -21.01631 -20.87905 -20.58380 -20.37466 -18.90556 -17.56362 -17.29191 -16.41937 -16.32281 -16.12727 -15.47270 -15.29309 -14.94265 -14.78031 -14.54305 -14.22854 -14.11907 -13.80499 -13.60937 -13.27617 -12.92156 -12.49298 -12.42337 -12.20833 -12.01482 -11.76303 -11.64868 -11.38104 -11.32699 -11.01782 -10.93673 -10.41858 -10.25411 -10.22983 -10.09634 -9.75678 -9.68771 -9.62947 -9.41266 -8.74795 -8.47064 -8.43638 -6.87772 -6.69131 -4.61137 1.43315 1.68952 1.99342 2.45260 2.68137 2.88590 3.04468 3.07599 3.12413 3.31206 3.71415 3.84418 4.20193 4.27993 4.35833 4.43314 4.59112 4.99048 5.09744 5.23836 5.26505 5.28139 5.33273 5.55177 5.72941 5.87660 5.88782 5.92092 5.98553 6.01851 6.05332 6.18096 6.24253 6.49712 6.72546 6.87265 7.20548 7.22881 7.44861 7.83918 7.88429 8.14242 8.15443 8.66356 8.81544 10.23325 10.57382 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029359 B = 0.002079 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.498068 B =13465.024420 C =14168.135971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.178 4.178 3 C 0.163 3.837 4 N -0.737 5.737 5 C 0.696 3.304 6 O -0.530 6.530 7 N -0.686 5.686 8 C 0.542 3.458 9 O -0.452 6.452 10 C -0.096 4.096 11 H 0.123 0.877 12 C -0.143 4.143 13 S 0.019 5.981 14 C 0.034 3.966 15 N -0.286 5.286 16 N -0.333 5.333 17 C 0.347 3.653 18 C -0.446 4.446 19 H 0.084 0.916 20 C 0.079 3.921 21 N -0.737 5.737 22 Si 0.920 3.080 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.262 1.262 26 N -0.513 5.513 27 C 0.100 3.900 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.400 0.600 34 H 0.412 0.588 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.279 0.721 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.775 -6.562 -10.552 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.196 4.196 3 C 0.039 3.961 4 N -0.395 5.395 5 C 0.395 3.605 6 O -0.401 6.401 7 N -0.352 5.352 8 C 0.326 3.674 9 O -0.319 6.319 10 C -0.229 4.229 11 H 0.141 0.859 12 C -0.201 4.201 13 S 0.245 5.755 14 C -0.337 4.337 15 N -0.133 5.133 16 N -0.180 5.180 17 C 0.103 3.897 18 C -0.486 4.486 19 H 0.102 0.898 20 C -0.147 4.147 21 N -0.361 5.361 22 Si 0.744 3.256 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.186 1.186 26 N -0.215 5.215 27 C -0.045 4.045 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.235 0.765 34 H 0.248 0.752 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.476 -5.559 -11.704 19.428 hybrid contribution 1.363 -0.596 1.398 2.041 sum -13.113 -6.155 -10.306 17.778 Atomic orbital electron populations 1.24014 0.95769 1.02563 0.97687 1.22989 0.96223 0.98018 1.02395 1.20333 0.91166 0.95692 0.88890 1.45208 1.42488 1.19194 1.32568 1.16091 0.79228 0.83652 0.81492 1.91079 1.68770 1.34649 1.45647 1.44052 1.39590 1.21764 1.29834 1.20161 0.80141 0.81572 0.85534 1.90846 1.63941 1.32994 1.44077 1.23214 0.97492 1.05216 0.96955 0.85925 1.22062 1.00690 1.01597 0.95794 1.85097 1.19597 1.46765 1.24004 1.25515 0.96490 1.05699 1.06046 1.74413 1.21646 1.16917 1.00282 1.75430 1.02168 1.20733 1.19670 1.21617 0.95779 0.90095 0.82204 1.18117 1.04669 1.19608 1.06249 0.89762 1.25789 0.98126 0.93878 0.96890 1.70002 1.33585 1.15074 1.17402 0.86121 0.80840 0.78931 0.79678 1.19357 1.19995 1.18646 1.46006 1.20417 1.32468 1.22580 1.21522 0.98892 0.89084 0.95007 0.87761 0.88056 0.86521 0.90828 0.90376 0.76539 0.75224 0.87776 0.91623 0.92066 0.90981 0.92386 0.90284 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 14.32 29.01 0.42 -0.29 16 2 C -0.18 -0.86 9.63 -36.02 -0.35 -1.21 16 3 C 0.16 1.19 6.11 -5.19 -0.03 1.16 16 4 N -0.74 -5.76 5.55 -66.42 -0.37 -6.12 16 5 C 0.70 8.66 8.51 -86.91 -0.74 7.92 16 6 O -0.53 -9.38 14.74 -18.48 -0.27 -9.65 16 7 N -0.69 -7.57 5.24 -15.78 -0.08 -7.65 16 8 C 0.54 8.20 6.94 -10.99 -0.08 8.12 16 9 O -0.45 -8.78 14.44 -18.21 -0.26 -9.05 16 10 C -0.10 -1.48 2.69 -27.88 -0.08 -1.56 16 11 H 0.12 1.79 8.14 -51.92 -0.42 1.37 16 12 C -0.14 -2.12 8.99 37.16 0.33 -1.79 16 13 S 0.02 0.36 20.48 -107.50 -2.20 -1.85 16 14 C 0.03 0.79 7.78 -87.28 -0.68 0.11 16 15 N -0.29 -7.31 9.73 30.89 0.30 -7.01 16 16 N -0.33 -9.55 10.48 31.26 0.33 -9.23 16 17 C 0.35 9.44 7.53 -154.80 -1.17 8.28 16 18 C -0.45 -11.56 9.05 -38.31 -0.35 -11.91 16 19 H 0.08 1.99 7.30 -52.49 -0.38 1.60 16 20 C 0.08 1.96 5.50 -17.29 -0.10 1.87 16 21 N -0.74 -19.65 11.94 55.56 0.66 -18.99 16 22 Si 0.92 18.15 29.56 -169.99 -5.03 13.12 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 26 N -0.51 -12.15 3.26 -123.18 -0.40 -12.55 16 27 C 0.10 1.83 10.88 59.85 0.65 2.48 16 28 H 0.10 0.33 8.06 -52.49 -0.42 -0.10 16 29 H 0.10 0.43 7.84 -52.49 -0.41 0.02 16 30 H 0.12 0.43 8.06 -52.49 -0.42 0.01 16 31 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.40 1.80 8.48 -40.82 -0.35 1.45 16 34 H 0.41 2.73 8.71 -40.82 -0.36 2.37 16 35 H 0.10 1.92 5.88 -51.93 -0.31 1.62 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.38 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.35 7.53 -51.93 -0.39 0.96 16 41 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -37.40 371.15 -8.98 -46.39 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.10 Total: 3.81 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: -2.15 Total: 13.18 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.44 Total: -61.55 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.54 Total: -18.70 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.20 Total: -1.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.40 -8.98 -46.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357070418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.853 kcal (2) G-P(sol) polarization free energy of solvation -37.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds