Wall clock time and date at job start Tue Mar 31 2020 22:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00000 * 2 1 4 4 N 1.46499 * 109.46974 * 125.00048 * 3 2 1 5 5 C 1.34774 * 119.99728 * 179.97438 * 4 3 2 6 6 O 1.21542 * 120.00088 * 0.02562 * 5 4 3 7 7 N 1.34785 * 120.00092 * 180.02562 * 5 4 3 8 8 C 1.34774 * 120.00092 * 179.97438 * 7 5 4 9 9 O 1.21234 * 120.00252 * 0.02562 * 8 7 5 10 10 C 1.50699 * 119.99589 * 180.02562 * 8 7 5 11 11 H 1.08992 * 109.47201 * 40.00766 * 10 8 7 12 12 C 1.52997 * 109.47336 * 280.00101 * 10 8 7 13 13 S 1.81000 * 109.46643 * 160.00617 * 10 8 7 14 14 C 1.76206 * 99.99929 * 185.00197 * 13 10 8 15 15 N 1.32386 * 126.25881 * 359.68621 * 14 13 10 16 16 N 1.28506 * 110.20485 * 179.81940 * 15 14 13 17 17 C 1.33098 * 109.74820 * 0.45145 * 16 15 14 18 18 C 1.39778 * 126.56991 * 179.74754 * 17 16 15 19 19 H 1.07994 * 119.99946 * 179.97438 * 18 17 16 20 20 C 1.40082 * 119.99604 * 359.97438 * 18 17 16 21 21 N 1.30818 * 120.00124 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99583 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47219 * 90.00498 * 22 20 18 24 24 H 1.48510 * 109.46915 * 209.99870 * 22 20 18 25 25 H 1.48493 * 109.47418 * 329.99601 * 22 20 18 26 26 N 1.36671 * 126.25691 * 179.97438 * 14 13 10 27 27 C 1.46500 * 127.15506 * 359.96389 * 26 14 13 28 28 H 1.08001 * 119.99908 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.00373 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.99863 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46717 * 5.00568 * 3 2 1 32 32 H 1.08993 * 109.47343 * 245.00599 * 3 2 1 33 33 H 0.96997 * 119.99869 * 0.02562 * 4 3 2 34 34 H 0.96997 * 119.99505 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.47446 * 180.02562 * 12 10 8 36 36 H 1.08992 * 109.47518 * 300.00470 * 12 10 8 37 37 H 1.09002 * 109.46905 * 60.00506 * 12 10 8 38 38 H 0.96997 * 119.99973 * 180.02562 * 21 20 18 39 39 H 1.09003 * 109.46805 * 90.02725 * 27 26 14 40 40 H 1.08995 * 109.47171 * 210.02204 * 27 26 14 41 41 H 1.08992 * 109.46873 * 330.02528 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4086 1.3328 6 8 3.7150 3.3575 0.5761 7 7 4.6352 2.4330 2.3735 8 6 5.4208 3.5095 2.5746 9 8 5.3570 4.4561 1.8198 10 6 6.3785 3.5365 3.7378 11 1 6.8367 2.5544 3.8540 12 6 5.6192 3.8997 5.0154 13 16 7.6665 4.7705 3.4302 14 6 8.6996 4.4899 4.8297 15 7 8.4946 3.6002 5.7884 16 7 9.4417 3.6557 6.6552 17 6 10.3144 4.5987 6.3081 18 6 11.4727 4.9581 7.0031 19 1 12.1090 5.7433 6.6227 20 6 11.8081 4.2995 8.1931 21 7 11.0370 3.3486 8.6542 22 14 13.3556 4.7802 9.1224 23 1 13.0342 5.8527 10.0979 24 1 13.8867 3.5966 9.8452 25 1 14.3761 5.2731 8.1629 26 7 9.8561 5.1548 5.1270 27 6 10.4809 6.2319 4.3551 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 3.0450 0.5744 1.7351 34 1 4.6865 1.6756 2.9771 35 1 6.3120 3.9196 5.8567 36 1 5.1610 4.8817 4.8991 37 1 4.8435 3.1565 5.2006 38 1 11.2690 2.8929 9.4784 39 1 10.0996 7.1935 4.6988 40 1 11.5614 6.1989 4.4942 41 1 10.2465 6.1046 3.2983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357070418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:15 Heat of formation + Delta-G solvation = 9.454996 kcal Electronic energy + Delta-G solvation = -25894.531591 eV Core-core repulsion = 21937.244333 eV Total energy + Delta-G solvation = -3957.287259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.44407 -42.38943 -39.84291 -36.83358 -35.98240 -35.61453 -35.17295 -34.19422 -33.47257 -31.22479 -28.24042 -27.73306 -27.36061 -25.98976 -23.29158 -22.75687 -22.38243 -21.78747 -21.18829 -19.79452 -19.24722 -18.61252 -17.88898 -17.37680 -17.25554 -16.89779 -16.53556 -16.20796 -16.14933 -15.97992 -15.49490 -15.27555 -15.07858 -14.85029 -14.22339 -14.02207 -13.92466 -13.73793 -13.44763 -13.40351 -13.16182 -12.98988 -12.89587 -12.74846 -12.20689 -12.03479 -11.97427 -11.68565 -11.51414 -11.41935 -11.40000 -11.03215 -10.60421 -10.56395 -10.33888 -10.26299 -10.12348 -8.58218 -8.52846 -6.55470 0.14816 0.77372 0.97574 1.12804 1.21026 1.43969 1.57217 1.59283 1.63073 2.07390 2.20119 2.46468 2.51482 2.80548 3.35887 3.43107 3.72779 3.83853 3.98194 4.08915 4.17286 4.45340 4.54935 4.61593 4.62844 4.66731 4.73532 4.88049 4.90655 4.95510 5.01327 5.19483 5.24653 5.34565 5.37178 5.59216 5.66919 5.78030 6.05306 6.24039 6.36634 6.78077 6.88698 6.93231 7.22998 8.42594 8.65631 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029359 B = 0.002079 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.498068 B =13465.024420 C =14168.135971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.180 4.180 3 C 0.160 3.840 4 N -0.711 5.711 5 C 0.693 3.307 6 O -0.584 6.584 7 N -0.665 5.665 8 C 0.554 3.446 9 O -0.497 6.497 10 C -0.089 4.089 11 H 0.136 0.864 12 C -0.137 4.137 13 S 0.028 5.972 14 C 0.047 3.953 15 N -0.310 5.310 16 N -0.382 5.382 17 C 0.318 3.682 18 C -0.471 4.471 19 H 0.100 0.900 20 C 0.032 3.968 21 N -0.784 5.784 22 Si 1.003 2.997 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.250 1.250 26 N -0.521 5.521 27 C 0.093 3.907 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.420 0.580 34 H 0.435 0.565 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.285 0.715 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.115 -7.375 -10.931 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.199 4.199 3 C 0.036 3.964 4 N -0.369 5.369 5 C 0.393 3.607 6 O -0.459 6.459 7 N -0.333 5.333 8 C 0.338 3.662 9 O -0.367 6.367 10 C -0.222 4.222 11 H 0.154 0.846 12 C -0.196 4.196 13 S 0.254 5.746 14 C -0.327 4.327 15 N -0.155 5.155 16 N -0.229 5.229 17 C 0.072 3.928 18 C -0.511 4.511 19 H 0.118 0.882 20 C -0.190 4.190 21 N -0.409 5.409 22 Si 0.823 3.177 23 H -0.187 1.187 24 H -0.195 1.195 25 H -0.174 1.174 26 N -0.222 5.222 27 C -0.050 4.050 28 H 0.139 0.861 29 H 0.117 0.883 30 H 0.151 0.849 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.258 0.742 34 H 0.275 0.725 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.850 -6.458 -12.066 20.195 hybrid contribution 1.247 -0.385 1.351 1.878 sum -13.603 -6.843 -10.716 18.620 Atomic orbital electron populations 1.24200 0.95680 1.03317 0.96251 1.22898 0.96255 0.97139 1.03562 1.20408 0.90820 0.97027 0.88099 1.45075 1.40872 1.18310 1.32671 1.16279 0.79457 0.83931 0.81011 1.91054 1.70389 1.36981 1.47524 1.43697 1.38306 1.21415 1.29870 1.19956 0.79933 0.81752 0.84544 1.90842 1.65370 1.34917 1.45555 1.23283 0.96702 1.04648 0.97590 0.84607 1.21965 1.00748 1.02936 0.93902 1.85127 1.19887 1.48112 1.21437 1.26279 0.96278 1.03924 1.06170 1.74319 1.21641 1.18526 1.00983 1.75309 1.03532 1.22491 1.21556 1.22008 0.96419 0.90702 0.83641 1.18602 1.04909 1.20523 1.07114 0.88162 1.26899 1.01502 0.93223 0.97337 1.70129 1.35952 1.16577 1.18235 0.84894 0.76148 0.78615 0.78083 1.18726 1.19489 1.17358 1.46325 1.20501 1.33159 1.22205 1.21834 0.99446 0.88240 0.95514 0.86065 0.88310 0.84857 0.91849 0.91418 0.74192 0.72457 0.91161 0.91866 0.88008 0.90495 0.90863 0.89152 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 14.32 67.78 0.97 -0.02 16 2 C -0.18 -1.33 9.63 25.65 0.25 -1.08 16 3 C 0.16 2.14 6.11 85.63 0.52 2.66 16 4 N -0.71 -9.69 5.55 -482.35 -2.68 -12.37 16 5 C 0.69 16.37 8.51 179.05 1.52 17.89 16 6 O -0.58 -20.68 14.74 18.91 0.28 -20.40 16 7 N -0.67 -13.38 5.24 -440.52 -2.31 -15.69 16 8 C 0.55 16.10 6.94 87.66 0.61 16.71 16 9 O -0.50 -19.20 14.44 19.87 0.29 -18.91 16 10 C -0.09 -2.67 2.69 29.85 0.08 -2.59 16 11 H 0.14 3.76 8.14 -2.40 -0.02 3.74 16 12 C -0.14 -3.93 8.99 71.98 0.65 -3.28 16 13 S 0.03 1.05 20.48 -56.49 -1.16 -0.11 16 14 C 0.05 2.19 7.78 179.18 1.39 3.58 16 15 N -0.31 -16.19 9.73 -56.17 -0.55 -16.74 16 16 N -0.38 -22.69 10.48 -55.01 -0.58 -23.26 16 17 C 0.32 17.71 7.53 133.23 1.00 18.71 16 18 C -0.47 -24.70 9.05 23.09 0.21 -24.49 16 19 H 0.10 4.69 7.30 -2.91 -0.02 4.67 16 20 C 0.03 1.58 5.50 85.29 0.47 2.05 16 21 N -0.78 -42.95 11.94 21.86 0.26 -42.69 16 22 Si 1.00 36.97 29.56 68.60 2.03 39.00 16 23 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 24 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 25 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 26 N -0.52 -24.80 3.26 -543.62 -1.77 -26.58 16 27 C 0.09 3.30 10.88 127.77 1.39 4.69 16 28 H 0.12 0.40 8.06 -2.91 -0.02 0.37 16 29 H 0.10 0.68 7.84 -2.91 -0.02 0.65 16 30 H 0.13 0.57 8.06 -2.91 -0.02 0.55 16 31 H 0.06 1.00 7.79 -2.39 -0.02 0.98 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.42 2.47 8.48 -92.71 -0.79 1.69 16 34 H 0.44 4.43 8.71 -92.71 -0.81 3.62 16 35 H 0.07 2.60 5.88 -2.38 -0.01 2.59 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.28 14.05 8.30 -92.71 -0.77 13.28 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.09 2.98 7.53 -2.39 -0.02 2.97 16 41 H 0.09 2.72 7.85 -2.39 -0.02 2.70 16 Total: -1.00 -85.68 371.15 2.38 -83.30 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.50 Total: 19.61 kcal Atomic # 6 Polarization: 25.76 SS G_CDS: 9.06 Total: 34.83 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -7.62 Total: -137.32 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: 0.57 Total: -39.31 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -1.16 Total: -0.11 kcal Total: -85.68 2.38 -83.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357070418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.754 kcal (2) G-P(sol) polarization free energy of solvation -85.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds