Wall clock time and date at job start Tue Mar 31 2020 22:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00090 * 2 1 4 4 H 1.48504 * 109.47232 * 240.00161 * 3 2 1 5 5 H 1.48497 * 109.47247 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47175 * 120.00304 * 3 2 1 7 7 C 1.37882 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46802 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.46866 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54326 * 68.37579 * 11 10 9 13 13 O 1.42097 * 110.54474 * 291.62182 * 11 10 9 14 14 N 1.65608 * 104.44945 * 179.97438 * 11 10 9 15 15 C 1.46495 * 119.99695 * 64.99881 * 14 11 10 16 16 C 1.53002 * 109.46973 * 165.00079 * 15 14 11 17 17 H 1.08993 * 110.45807 * 56.14970 * 16 15 14 18 18 C 1.54510 * 110.51223 * 293.54467 * 16 15 14 19 19 C 1.54478 * 104.06627 * 241.35958 * 18 16 15 20 20 O 1.44419 * 104.80298 * 23.97540 * 19 18 16 21 21 C 1.44424 * 105.27788 * 319.49229 * 20 19 18 22 22 H 1.09002 * 110.37151 * 281.67996 * 21 20 19 23 23 C 1.50697 * 110.37499 * 159.34186 * 21 20 19 24 24 C 1.38239 * 120.00162 * 329.34976 * 23 21 20 25 25 C 1.38237 * 119.99790 * 179.78380 * 24 23 21 26 26 C 1.38227 * 120.00297 * 0.46824 * 25 24 23 27 27 C 1.38238 * 119.99965 * 359.75846 * 26 25 24 28 28 C 1.38233 * 119.99967 * 0.03054 * 27 26 25 29 29 H 0.96992 * 119.99792 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47347 * 59.99998 * 9 7 2 31 31 H 1.08998 * 109.46476 * 299.99776 * 9 7 2 32 32 H 1.08996 * 109.47800 * 59.99756 * 10 9 7 33 33 H 1.09006 * 109.47089 * 299.99421 * 10 9 7 34 34 H 0.96999 * 120.00176 * 245.00119 * 14 11 10 35 35 H 1.09000 * 109.47742 * 285.00040 * 15 14 11 36 36 H 1.09003 * 109.47545 * 44.99964 * 15 14 11 37 37 H 1.09007 * 110.50678 * 0.02562 * 18 16 15 38 38 H 1.09002 * 110.51132 * 122.70661 * 18 16 15 39 39 H 1.08992 * 110.37748 * 142.80944 * 19 18 16 40 40 H 1.09004 * 110.36933 * 265.03754 * 19 18 16 41 41 H 1.07994 * 119.99539 * 359.97438 * 24 23 21 42 42 H 1.07999 * 119.99298 * 180.24713 * 25 24 23 43 43 H 1.08001 * 120.00297 * 179.79032 * 26 25 24 44 44 H 1.08007 * 119.99886 * 180.02562 * 27 26 25 45 45 H 1.08005 * 119.99802 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 16 1.3382 -5.2331 -0.0021 12 8 0.6647 -5.4195 -1.2394 13 8 0.6637 -5.4200 1.2346 14 7 2.5204 -6.3928 -0.0025 15 6 3.4187 -6.5234 1.1474 16 6 4.1497 -7.8654 1.0736 17 1 4.6810 -7.9583 0.1265 18 6 3.1553 -9.0342 1.2533 19 6 3.6474 -9.7532 2.5289 20 8 4.3796 -8.7462 3.2608 21 6 5.1251 -8.0165 2.2620 22 1 6.0072 -8.5808 1.9594 23 6 5.5228 -6.6621 2.7896 24 6 4.7193 -6.0157 3.7102 25 6 5.0865 -4.7753 4.1975 26 6 6.2522 -4.1770 3.7571 27 6 7.0533 -4.8214 2.8330 28 6 6.6884 -6.0637 2.3490 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5564 -0.8919 31 1 0.6241 -2.5574 0.8880 32 1 2.8713 -3.6048 0.8890 33 1 2.8725 -3.6040 -0.8910 34 1 2.6181 -6.9856 -0.7640 35 1 4.1465 -5.7120 1.1340 36 1 2.8386 -6.4758 2.0690 37 1 2.1427 -8.6559 1.3942 38 1 3.1967 -9.7062 0.3960 39 1 2.8001 -10.1076 3.1157 40 1 4.3014 -10.5851 2.2673 41 1 3.8063 -6.4812 4.0509 42 1 4.4607 -4.2721 4.9197 43 1 6.5373 -3.2064 4.1353 44 1 7.9644 -4.3541 2.4892 45 1 7.3142 -6.5669 1.6267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359978563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:12 Heat of formation + Delta-G solvation = -127.854655 kcal Electronic energy + Delta-G solvation = -27996.563306 eV Core-core repulsion = 24104.569447 eV Total energy + Delta-G solvation = -3891.993860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35570 -39.30163 -38.19018 -37.06827 -36.58242 -35.90346 -33.22737 -33.13983 -32.47779 -31.74253 -29.09994 -27.60038 -26.43180 -24.04210 -23.60779 -23.43393 -22.32990 -21.11681 -20.33632 -19.11262 -18.35053 -18.07806 -17.57164 -17.11691 -16.96779 -16.61532 -16.53193 -16.39193 -15.83613 -15.55177 -15.39338 -15.08083 -15.03734 -14.49309 -14.31902 -14.07944 -13.74259 -13.66892 -13.47717 -13.24003 -13.15006 -13.12885 -12.91533 -12.81168 -12.65689 -12.44769 -12.25519 -12.17723 -12.14566 -11.87896 -11.83479 -11.74317 -11.48849 -11.20278 -10.73139 -10.64077 -10.39250 -9.76408 -9.56006 -8.25957 -6.40064 -0.70308 0.42719 0.54973 1.40335 1.43925 1.52097 1.81604 2.37933 2.76666 2.78485 3.07363 3.08654 3.23275 3.49887 3.58042 3.80521 3.99075 4.06579 4.10121 4.11947 4.22275 4.26656 4.31347 4.36596 4.41207 4.47907 4.64149 4.69499 4.72651 4.75940 4.84276 4.90421 4.92512 5.08686 5.15333 5.21346 5.21564 5.25734 5.26383 5.59377 5.62419 5.67692 5.69844 5.98071 6.05702 6.14383 6.14582 6.72879 7.29981 8.86264 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.003894 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.496064 B = 7188.856742 C = 9066.134147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.588 4.588 11 S 2.619 3.381 12 O -0.997 6.997 13 O -0.998 6.998 14 N -1.103 6.103 15 C 0.118 3.882 16 C -0.112 4.112 17 H 0.125 0.875 18 C -0.156 4.156 19 C 0.041 3.959 20 O -0.389 6.389 21 C 0.125 3.875 22 H 0.110 0.890 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.139 4.139 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.111 4.111 29 H 0.267 0.733 30 H 0.007 0.993 31 H 0.005 0.995 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.427 0.573 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.132 0.868 44 H 0.145 0.855 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.366 -19.071 3.534 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.720 4.720 11 S 2.715 3.285 12 O -0.987 6.987 13 O -0.988 6.988 14 N -0.866 5.866 15 C -0.008 4.008 16 C -0.133 4.133 17 H 0.143 0.857 18 C -0.193 4.193 19 C -0.035 4.035 20 O -0.309 6.309 21 C 0.067 3.933 22 H 0.127 0.873 23 C -0.097 4.097 24 C -0.133 4.133 25 C -0.157 4.157 26 C -0.146 4.146 27 C -0.142 4.142 28 C -0.129 4.129 29 H 0.076 0.924 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.153 0.847 33 H 0.162 0.838 34 H 0.264 0.736 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.150 0.850 44 H 0.163 0.837 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.239 -19.018 3.930 25.315 hybrid contribution 0.115 1.204 -0.222 1.229 sum 16.354 -17.815 3.707 24.466 Atomic orbital electron populations 1.70096 1.08084 1.28390 1.50810 1.26108 0.95833 1.03832 0.94326 0.85383 0.78184 0.77319 0.79502 1.18684 1.20939 1.18753 1.21460 0.93905 0.90734 1.51647 0.90704 1.18804 0.93532 0.93088 0.96288 1.30328 1.12798 1.16814 1.12040 1.04447 0.74747 0.76559 0.72727 1.93504 1.73088 1.85797 1.46320 1.93500 1.72782 1.85398 1.47095 1.55228 1.52287 1.50659 1.28415 1.21659 0.92423 0.99333 0.87391 1.22755 0.96317 0.93327 1.00854 0.85701 1.23120 0.99290 0.97121 0.99795 1.23572 0.96305 0.91215 0.92416 1.89168 1.62479 1.48140 1.31116 1.21913 0.94947 0.89807 0.86643 0.87293 1.19751 0.95802 0.95731 0.98376 1.21110 0.99734 0.95088 0.97343 1.21398 0.97674 0.95790 1.00818 1.21469 0.94800 1.00478 0.97859 1.21435 1.00461 0.95354 0.96992 1.21216 0.95631 0.95819 1.00218 0.92385 0.97453 0.97689 0.84712 0.83799 0.73636 0.90685 0.91806 0.91821 0.87537 0.88928 0.89789 0.86697 0.85898 0.84965 0.83724 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.02 1.15 4.98 29.85 0.15 1.30 16 10 C -0.59 -22.73 6.01 71.98 0.43 -22.30 16 11 S 2.62 94.85 5.46 -56.49 -0.31 94.54 16 12 O -1.00 -41.72 18.08 -127.65 -2.31 -44.03 16 13 O -1.00 -42.97 17.50 -127.65 -2.23 -45.20 16 14 N -1.10 -26.57 5.63 -187.49 -1.05 -27.63 16 15 C 0.12 2.61 4.00 86.38 0.35 2.96 16 16 C -0.11 -1.69 3.10 -9.78 -0.03 -1.72 16 17 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 18 C -0.16 -2.24 6.56 31.61 0.21 -2.03 16 19 C 0.04 0.59 7.63 72.48 0.55 1.14 16 20 O -0.39 -7.84 10.41 -148.98 -1.55 -9.39 16 21 C 0.13 2.00 3.42 30.35 0.10 2.10 16 22 H 0.11 1.18 8.10 -2.39 -0.02 1.16 16 23 C -0.10 -1.88 3.49 -19.87 -0.07 -1.95 16 24 C -0.11 -2.75 7.56 22.27 0.17 -2.58 16 25 C -0.14 -3.29 10.05 22.27 0.22 -3.07 16 26 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 27 C -0.12 -2.18 10.05 22.27 0.22 -1.96 16 28 C -0.11 -1.81 9.71 22.27 0.22 -1.59 16 29 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.13 4.72 8.14 -2.39 -0.02 4.70 16 33 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 34 H 0.43 7.78 8.62 -96.74 -0.83 6.94 16 35 H 0.08 1.61 6.83 -2.39 -0.02 1.60 16 36 H 0.06 1.72 6.57 -2.39 -0.02 1.71 16 37 H 0.06 1.23 7.67 -2.38 -0.02 1.21 16 38 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.11 2.98 7.20 -2.91 -0.02 2.96 16 42 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 44 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -79.30 380.78 -1.55 -80.85 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.15 Total: 24.11 kcal Atomic # 6 Polarization: -65.10 SS G_CDS: 3.44 Total: -61.66 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -0.77 Total: -84.56 kcal Atomic # 8 Polarization: -92.54 SS G_CDS: -6.09 Total: -98.63 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 94.85 SS G_CDS: -0.31 Total: 94.54 kcal Total: -79.30 -1.55 -80.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359978563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.009 kcal (2) G-P(sol) polarization free energy of solvation -79.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds