Wall clock time and date at job start Tue Mar 31 2020 22:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86798 * 120.00423 * 2 1 4 4 H 1.48504 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47262 * 300.00252 * 3 2 1 6 6 H 1.48501 * 109.46890 * 60.00350 * 3 2 1 7 7 C 1.39939 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00104 * 197.90337 * 7 2 1 9 9 C 1.41432 * 119.99868 * 17.89431 * 7 2 1 10 10 C 1.40787 * 120.17931 * 204.45146 * 9 7 2 11 11 C 1.37715 * 120.04363 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.40707 * 359.69499 * 11 10 9 13 13 C 1.39883 * 120.36217 * 0.56135 * 12 11 10 14 14 C 1.47878 * 120.02652 * 179.73975 * 13 12 11 15 15 O 1.21549 * 120.00110 * 179.72195 * 14 13 12 16 16 N 1.34781 * 120.00429 * 359.72262 * 14 13 12 17 17 C 1.46497 * 120.00253 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.68963 * 34.44966 * 17 16 14 19 19 C 1.53404 * 109.69606 * 273.86033 * 17 16 14 20 20 O 1.42838 * 108.37265 * 175.62286 * 19 17 16 21 21 C 1.35844 * 117.84940 * 49.27307 * 20 19 17 22 22 C 1.39151 * 118.50239 * 162.78440 * 21 20 19 23 23 C 1.37965 * 120.21503 * 179.56188 * 22 21 20 24 24 C 1.38294 * 119.95653 * 359.97438 * 23 22 21 25 25 C 1.38103 * 119.98369 * 0.09138 * 24 23 22 26 26 C 1.38361 * 121.80039 * 342.51076 * 21 20 19 27 27 C 1.50770 * 121.40497 * 0.79757 * 26 21 20 28 28 H 1.08995 * 109.44074 * 102.08448 * 27 26 21 29 29 O 1.42900 * 109.43664 * 222.00200 * 27 26 21 30 30 C 1.39030 * 119.94447 * 359.46333 * 13 12 11 31 31 H 0.97006 * 119.99346 * 359.97438 * 1 2 3 32 32 H 1.08003 * 119.97739 * 0.02562 * 10 9 7 33 33 H 1.07996 * 119.79458 * 179.97438 * 11 10 9 34 34 H 1.08003 * 119.82333 * 180.27751 * 12 11 10 35 35 H 0.97000 * 119.99506 * 0.02562 * 16 14 13 36 36 H 1.09004 * 109.68110 * 295.34771 * 19 17 16 37 37 H 1.08998 * 109.68624 * 55.86634 * 19 17 16 38 38 H 1.08003 * 119.89155 * 359.53655 * 22 21 20 39 39 H 1.07994 * 120.02165 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00493 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.84073 * 180.02562 * 25 24 23 42 42 H 0.96705 * 113.99387 * 299.99713 * 29 27 26 43 43 H 1.08005 * 120.20427 * 180.27251 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7024 1.3462 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0487 -1.2347 0.2870 9 6 1.3520 -2.4069 -0.3774 10 6 1.8260 -3.6500 0.0833 11 6 1.1855 -4.8119 -0.2859 12 6 0.0709 -4.7675 -1.1046 13 6 -0.4113 -3.5421 -1.5765 14 6 -1.5997 -3.5037 -2.4558 15 8 -2.0214 -2.4384 -2.8615 16 7 -2.2153 -4.6500 -2.8074 17 6 -3.3928 -4.6119 -3.6781 18 1 -3.2911 -3.7999 -4.3981 19 6 -4.6546 -4.3988 -2.8321 20 8 -5.7703 -4.2637 -3.7137 21 6 -5.9223 -5.1938 -4.6920 22 6 -7.1603 -5.3029 -5.3179 23 6 -7.3513 -6.2294 -6.3222 24 6 -6.3098 -7.0526 -6.7095 25 6 -5.0801 -6.9480 -6.0896 26 6 -4.8833 -6.0216 -5.0789 27 6 -3.5299 -5.9443 -4.4191 28 1 -3.4243 -6.7658 -3.7106 29 8 -2.5093 -6.0408 -5.4146 30 6 0.2240 -2.3600 -1.2135 31 1 -0.4849 0.8402 0.0004 32 1 2.6925 -3.6924 0.7266 33 1 1.5528 -5.7633 0.0695 34 1 -0.4267 -5.6842 -1.3846 35 1 -1.8790 -5.5002 -2.4834 36 1 -4.8063 -5.2564 -2.1766 37 1 -4.5471 -3.4940 -2.2338 38 1 -7.9745 -4.6605 -5.0162 39 1 -8.3135 -6.3117 -6.8056 40 1 -6.4583 -7.7778 -7.4959 41 1 -4.2682 -7.5917 -6.3942 42 1 -2.5327 -6.8629 -5.9233 43 1 -0.1474 -1.4113 -1.5719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365615665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:24 Heat of formation + Delta-G solvation = -74.349521 kcal Electronic energy + Delta-G solvation = -28363.989479 eV Core-core repulsion = 24338.871825 eV Total energy + Delta-G solvation = -4025.117654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.18397 -39.24462 -37.78518 -37.41593 -36.85024 -34.41577 -33.73599 -31.89333 -30.65786 -30.49096 -29.49583 -29.05805 -25.56111 -25.35353 -23.98056 -22.79696 -22.07296 -21.00984 -20.39026 -19.61392 -18.71812 -17.83669 -17.12983 -16.98590 -16.45436 -16.06526 -15.54307 -15.21487 -15.01230 -14.78431 -14.61526 -14.24978 -13.97867 -13.94683 -13.83586 -13.30643 -13.19359 -12.98364 -12.71613 -12.53319 -12.27215 -12.17481 -11.67275 -11.54101 -11.32268 -11.16768 -11.08940 -10.92770 -10.75222 -10.50672 -10.44504 -10.05483 -9.71601 -9.23863 -9.17493 -9.09740 -8.90450 -8.39131 -7.66792 -7.54669 -6.82419 -4.43244 0.95342 1.13262 2.15649 2.78774 2.97176 3.07479 3.12204 3.13797 3.34388 3.54849 3.76225 3.89224 3.91109 4.28607 4.38337 4.49773 4.62439 4.73503 4.84750 4.88728 5.06277 5.17910 5.19354 5.32528 5.54163 5.58056 5.60268 5.64428 5.90375 5.97530 6.05537 6.09003 6.19738 6.24012 6.44675 6.68215 6.68987 6.95662 6.98443 7.18444 7.21120 7.30916 7.35130 7.66157 7.71268 7.88856 8.01693 8.15585 8.48153 8.77712 8.80652 8.85912 10.12323 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.002536 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.639079 B =11039.289728 C =11873.039982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.097 4.097 12 C -0.218 4.218 13 C -0.127 4.127 14 C 0.567 3.433 15 O -0.540 6.540 16 N -0.723 5.723 17 C 0.122 3.878 18 H 0.109 0.891 19 C 0.056 3.944 20 O -0.307 6.307 21 C 0.145 3.855 22 C -0.150 4.150 23 C -0.082 4.082 24 C -0.155 4.155 25 C -0.077 4.077 26 C -0.195 4.195 27 C 0.146 3.854 28 H 0.074 0.926 29 O -0.543 6.543 30 C -0.092 4.092 31 H 0.284 0.716 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.402 0.598 36 H 0.070 0.930 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.376 0.624 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.885 -13.857 -9.235 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.130 4.130 14 C 0.358 3.642 15 O -0.418 6.418 16 N -0.378 5.378 17 C 0.015 3.985 18 H 0.127 0.873 19 C -0.021 4.021 20 O -0.220 6.220 21 C 0.099 3.901 22 C -0.169 4.169 23 C -0.100 4.100 24 C -0.173 4.173 25 C -0.095 4.095 26 C -0.197 4.197 27 C 0.087 3.913 28 H 0.091 0.909 29 O -0.348 6.348 30 C -0.112 4.112 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.238 0.762 36 H 0.088 0.912 37 H 0.142 0.858 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.224 0.776 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.356 -12.144 -9.224 19.627 hybrid contribution 0.464 -0.469 -0.008 0.660 sum -11.892 -12.613 -9.232 19.641 Atomic orbital electron populations 1.69792 1.07595 1.29725 1.33533 1.25973 0.94784 1.01602 0.92282 0.86235 0.80894 0.80791 0.78709 1.18321 1.19521 1.19903 1.19622 0.98263 0.91031 1.39791 0.89999 1.17609 0.91178 0.92503 0.89179 1.21106 1.03508 0.92738 1.05728 1.20430 0.95971 0.96748 0.98419 1.20317 1.01350 0.94526 1.07586 1.19398 0.96467 0.95394 1.01748 1.18913 0.83112 0.82668 0.79468 1.90719 1.66194 1.29731 1.55119 1.45764 1.29934 1.10263 1.51822 1.21316 0.86305 0.97906 0.92928 0.87323 1.23524 0.82865 1.04797 0.90896 1.86072 1.47568 1.47171 1.41178 1.18800 0.93154 0.88549 0.89551 1.20655 0.95259 1.01641 0.99307 1.20975 0.99146 0.94321 0.95561 1.20982 0.93274 1.01344 1.01685 1.20732 0.97492 0.96664 0.94603 1.20462 0.95872 1.01151 1.02195 1.20723 0.83761 0.97465 0.89386 0.90870 1.86700 1.52101 1.44434 1.51586 1.21647 0.96459 0.96452 0.96606 0.90453 0.88586 0.88880 0.89304 0.76218 0.91211 0.85846 0.84915 0.85259 0.85682 0.85885 0.77588 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.60 10.96 55.55 0.61 -20.00 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 8 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 9 C 0.10 2.57 5.57 -106.87 -0.60 1.98 16 10 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 11 C -0.10 -2.05 10.01 -39.72 -0.40 -2.44 16 12 C -0.22 -4.49 9.55 -38.92 -0.37 -4.87 16 13 C -0.13 -2.96 5.87 -105.04 -0.62 -3.58 16 14 C 0.57 12.27 7.75 -12.31 -0.10 12.17 16 15 O -0.54 -13.46 15.99 5.32 0.09 -13.37 16 16 N -0.72 -11.85 5.04 -54.50 -0.27 -12.12 16 17 C 0.12 1.81 2.34 -67.69 -0.16 1.65 16 18 H 0.11 1.97 7.57 -51.93 -0.39 1.58 16 19 C 0.06 0.76 6.63 37.37 0.25 1.00 16 20 O -0.31 -4.30 10.27 -19.25 -0.20 -4.50 16 21 C 0.15 1.81 6.47 -39.20 -0.25 1.56 16 22 C -0.15 -1.56 9.94 -39.34 -0.39 -1.96 16 23 C -0.08 -0.69 10.04 -39.66 -0.40 -1.09 16 24 C -0.15 -1.25 10.04 -39.61 -0.40 -1.65 16 25 C -0.08 -0.68 9.26 -39.53 -0.37 -1.05 16 26 C -0.20 -2.20 5.58 -104.44 -0.58 -2.78 16 27 C 0.15 1.70 3.13 -27.81 -0.09 1.61 16 28 H 0.07 0.71 8.10 -51.93 -0.42 0.28 16 29 O -0.54 -6.45 13.17 -35.23 -0.46 -6.91 16 30 C -0.09 -2.43 8.24 -38.44 -0.32 -2.74 16 31 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 32 H 0.10 2.10 8.06 -52.48 -0.42 1.67 16 33 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.09 1.50 6.38 -52.48 -0.33 1.16 16 35 H 0.40 5.64 6.60 -40.82 -0.27 5.37 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.74 6.74 -52.49 -0.35 0.39 16 42 H 0.38 2.65 7.48 45.56 0.34 2.99 16 43 H 0.13 3.85 5.74 -52.48 -0.30 3.55 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -31.70 362.12 -9.65 -41.35 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -4.24 Total: 14.45 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -5.59 Total: -18.08 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.33 Total: -32.12 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.58 Total: -24.78 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.70 -9.65 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365615665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.002 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds