Wall clock time and date at job start Tue Mar 31 2020 22:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86798 * 120.00423 * 2 1 4 4 H 1.48504 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47262 * 300.00252 * 3 2 1 6 6 H 1.48501 * 109.46890 * 60.00350 * 3 2 1 7 7 C 1.39939 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00104 * 197.90337 * 7 2 1 9 9 C 1.41432 * 119.99868 * 17.89431 * 7 2 1 10 10 C 1.40787 * 120.17931 * 204.45146 * 9 7 2 11 11 C 1.37715 * 120.04363 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.40707 * 359.69499 * 11 10 9 13 13 C 1.39883 * 120.36217 * 0.56135 * 12 11 10 14 14 C 1.47878 * 120.02652 * 179.73975 * 13 12 11 15 15 O 1.21549 * 120.00110 * 179.72195 * 14 13 12 16 16 N 1.34781 * 120.00429 * 359.72262 * 14 13 12 17 17 C 1.46497 * 120.00253 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.68963 * 34.44966 * 17 16 14 19 19 C 1.53404 * 109.69606 * 273.86033 * 17 16 14 20 20 O 1.42838 * 108.37265 * 175.62286 * 19 17 16 21 21 C 1.35844 * 117.84940 * 49.27307 * 20 19 17 22 22 C 1.39151 * 118.50239 * 162.78440 * 21 20 19 23 23 C 1.37965 * 120.21503 * 179.56188 * 22 21 20 24 24 C 1.38294 * 119.95653 * 359.97438 * 23 22 21 25 25 C 1.38103 * 119.98369 * 0.09138 * 24 23 22 26 26 C 1.38361 * 121.80039 * 342.51076 * 21 20 19 27 27 C 1.50770 * 121.40497 * 0.79757 * 26 21 20 28 28 H 1.08995 * 109.44074 * 102.08448 * 27 26 21 29 29 O 1.42900 * 109.43664 * 222.00200 * 27 26 21 30 30 C 1.39030 * 119.94447 * 359.46333 * 13 12 11 31 31 H 0.97006 * 119.99346 * 359.97438 * 1 2 3 32 32 H 1.08003 * 119.97739 * 0.02562 * 10 9 7 33 33 H 1.07996 * 119.79458 * 179.97438 * 11 10 9 34 34 H 1.08003 * 119.82333 * 180.27751 * 12 11 10 35 35 H 0.97000 * 119.99506 * 0.02562 * 16 14 13 36 36 H 1.09004 * 109.68110 * 295.34771 * 19 17 16 37 37 H 1.08998 * 109.68624 * 55.86634 * 19 17 16 38 38 H 1.08003 * 119.89155 * 359.53655 * 22 21 20 39 39 H 1.07994 * 120.02165 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00493 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.84073 * 180.02562 * 25 24 23 42 42 H 0.96705 * 113.99387 * 299.99713 * 29 27 26 43 43 H 1.08005 * 120.20427 * 180.27251 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7024 1.3462 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0487 -1.2347 0.2870 9 6 1.3520 -2.4069 -0.3774 10 6 1.8260 -3.6500 0.0833 11 6 1.1855 -4.8119 -0.2859 12 6 0.0709 -4.7675 -1.1046 13 6 -0.4113 -3.5421 -1.5765 14 6 -1.5997 -3.5037 -2.4558 15 8 -2.0214 -2.4384 -2.8615 16 7 -2.2153 -4.6500 -2.8074 17 6 -3.3928 -4.6119 -3.6781 18 1 -3.2911 -3.7999 -4.3981 19 6 -4.6546 -4.3988 -2.8321 20 8 -5.7703 -4.2637 -3.7137 21 6 -5.9223 -5.1938 -4.6920 22 6 -7.1603 -5.3029 -5.3179 23 6 -7.3513 -6.2294 -6.3222 24 6 -6.3098 -7.0526 -6.7095 25 6 -5.0801 -6.9480 -6.0896 26 6 -4.8833 -6.0216 -5.0789 27 6 -3.5299 -5.9443 -4.4191 28 1 -3.4243 -6.7658 -3.7106 29 8 -2.5093 -6.0408 -5.4146 30 6 0.2240 -2.3600 -1.2135 31 1 -0.4849 0.8402 0.0004 32 1 2.6925 -3.6924 0.7266 33 1 1.5528 -5.7633 0.0695 34 1 -0.4267 -5.6842 -1.3846 35 1 -1.8790 -5.5002 -2.4834 36 1 -4.8063 -5.2564 -2.1766 37 1 -4.5471 -3.4940 -2.2338 38 1 -7.9745 -4.6605 -5.0162 39 1 -8.3135 -6.3117 -6.8056 40 1 -6.4583 -7.7778 -7.4959 41 1 -4.2682 -7.5917 -6.3942 42 1 -2.5327 -6.8629 -5.9233 43 1 -0.1474 -1.4113 -1.5719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365615665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:23 Heat of formation + Delta-G solvation = -96.528240 kcal Electronic energy + Delta-G solvation = -28364.951221 eV Core-core repulsion = 24338.871825 eV Total energy + Delta-G solvation = -4026.079396 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15349 -40.81455 -38.95711 -38.60237 -38.11082 -35.86988 -35.51432 -32.96953 -32.06999 -31.32877 -31.28017 -30.36915 -27.22495 -26.50448 -25.22299 -23.82954 -23.24168 -22.79065 -21.58107 -21.12975 -19.60140 -19.54700 -18.31225 -17.90947 -17.81702 -17.33024 -16.85622 -16.56526 -16.44885 -16.18374 -15.77329 -15.53816 -15.21246 -15.17666 -14.88115 -14.80528 -14.53428 -14.29763 -14.25053 -13.89489 -13.48632 -13.25696 -12.96600 -12.95397 -12.80543 -12.55393 -12.35410 -12.19026 -12.13043 -11.94171 -11.92306 -11.51214 -11.29855 -11.09140 -10.83644 -10.36376 -9.87555 -9.50694 -9.39803 -9.21992 -8.68131 -6.38918 0.23731 0.34093 0.39765 0.99445 1.35402 1.45489 1.51612 1.83730 2.03269 2.17965 2.28913 2.66077 2.76079 2.99609 3.36565 3.48750 3.65207 3.69511 3.79274 3.98434 4.04623 4.14970 4.20247 4.39424 4.43295 4.45301 4.53947 4.55584 4.58907 4.70590 4.90285 4.98118 5.07709 5.17828 5.23912 5.25594 5.30944 5.39223 5.50348 5.53017 5.79974 5.84572 5.90867 6.04492 6.26927 6.32254 6.44828 6.63225 6.70412 6.86901 6.93553 7.20849 8.28727 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.002536 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.639079 B =11039.289728 C =11873.039982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.982 3.018 4 H -0.250 1.250 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.496 4.496 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.215 4.215 11 C -0.095 4.095 12 C -0.195 4.195 13 C -0.137 4.137 14 C 0.565 3.435 15 O -0.586 6.586 16 N -0.696 5.696 17 C 0.120 3.880 18 H 0.067 0.933 19 C 0.061 3.939 20 O -0.328 6.328 21 C 0.108 3.892 22 C -0.165 4.165 23 C -0.079 4.079 24 C -0.150 4.150 25 C -0.077 4.077 26 C -0.208 4.208 27 C 0.157 3.843 28 H 0.104 0.896 29 O -0.563 6.563 30 C -0.132 4.132 31 H 0.286 0.714 32 H 0.109 0.891 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.417 0.583 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.135 0.865 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.398 0.602 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.110 -17.981 -10.289 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.802 3.198 4 H -0.173 1.173 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.525 4.525 8 H 0.103 0.897 9 C 0.063 3.937 10 C -0.234 4.234 11 C -0.113 4.113 12 C -0.214 4.214 13 C -0.140 4.140 14 C 0.355 3.645 15 O -0.467 6.467 16 N -0.351 5.351 17 C 0.014 3.986 18 H 0.085 0.915 19 C -0.015 4.015 20 O -0.241 6.241 21 C 0.064 3.936 22 C -0.184 4.184 23 C -0.097 4.097 24 C -0.168 4.168 25 C -0.095 4.095 26 C -0.210 4.210 27 C 0.098 3.902 28 H 0.122 0.878 29 O -0.372 6.372 30 C -0.152 4.152 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.256 0.744 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.153 0.847 39 H 0.176 0.824 40 H 0.175 0.825 41 H 0.173 0.827 42 H 0.250 0.750 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.587 -16.357 -10.290 23.062 hybrid contribution 0.417 0.544 0.186 0.710 sum -12.170 -15.812 -10.105 22.366 Atomic orbital electron populations 1.69894 1.09240 1.30508 1.35365 1.26859 0.95417 1.04991 0.91386 0.85165 0.79734 0.76160 0.78732 1.17341 1.19729 1.18790 1.19882 0.98605 0.92187 1.41815 0.89742 1.17957 0.91767 0.94038 0.89911 1.21427 1.03885 0.92722 1.05409 1.20938 0.95250 0.97768 0.97325 1.20855 1.00489 0.94989 1.05084 1.19686 0.96807 0.95693 1.01851 1.18812 0.83023 0.83377 0.79277 1.90697 1.67365 1.31790 1.56800 1.45448 1.29644 1.09213 1.50782 1.21367 0.85805 0.99072 0.92354 0.91500 1.23342 0.82574 1.04650 0.90956 1.86026 1.47346 1.48659 1.42058 1.19190 0.94723 0.89500 0.90233 1.20898 0.94809 1.02575 1.00076 1.21375 1.00708 0.93166 0.94474 1.21440 0.92597 1.01138 1.01609 1.21131 0.98922 0.96123 0.93321 1.20532 0.95103 1.01997 1.03339 1.20588 0.84135 0.95736 0.89776 0.87819 1.86656 1.52100 1.46400 1.52071 1.21444 0.98375 0.96411 0.99006 0.90358 0.87255 0.84121 0.84382 0.74355 0.88437 0.88472 0.84703 0.82428 0.82500 0.82699 0.75011 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.57 10.96 21.82 0.24 -46.33 16 2 C 0.03 1.50 5.14 85.26 0.44 1.94 16 3 Si 0.98 40.25 29.59 68.60 2.03 42.28 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.50 -27.18 9.05 23.47 0.21 -26.97 16 8 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 9 C 0.07 3.58 5.57 -21.32 -0.12 3.46 16 10 C -0.21 -9.95 9.78 22.77 0.22 -9.73 16 11 C -0.09 -3.68 10.01 22.18 0.22 -3.46 16 12 C -0.19 -7.48 9.55 22.70 0.22 -7.26 16 13 C -0.14 -6.50 5.87 -20.14 -0.12 -6.61 16 14 C 0.56 25.19 7.75 86.80 0.67 25.87 16 15 O -0.59 -31.35 15.99 -3.87 -0.06 -31.41 16 16 N -0.70 -22.34 5.04 -444.61 -2.24 -24.58 16 17 C 0.12 3.59 2.34 45.15 0.11 3.69 16 18 H 0.07 2.59 7.57 -2.39 -0.02 2.57 16 19 C 0.06 1.72 6.63 72.12 0.48 2.19 16 20 O -0.33 -9.55 10.27 -91.80 -0.94 -10.49 16 21 C 0.11 2.66 6.47 22.52 0.15 2.81 16 22 C -0.17 -3.29 9.94 22.42 0.22 -3.07 16 23 C -0.08 -1.10 10.04 22.22 0.22 -0.88 16 24 C -0.15 -1.81 10.04 22.25 0.22 -1.59 16 25 C -0.08 -1.08 9.26 22.30 0.21 -0.88 16 26 C -0.21 -4.28 5.58 -19.75 -0.11 -4.39 16 27 C 0.16 3.31 3.13 29.89 0.09 3.40 16 28 H 0.10 1.57 8.10 -2.39 -0.02 1.55 16 29 O -0.56 -11.94 13.17 -148.98 -1.96 -13.91 16 30 C -0.13 -7.39 8.24 23.01 0.19 -7.20 16 31 H 0.29 14.89 8.30 -92.70 -0.77 14.12 16 32 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 33 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.14 3.91 6.38 -2.91 -0.02 3.89 16 35 H 0.42 10.43 6.60 -92.71 -0.61 9.81 16 36 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.16 1.08 6.74 -2.91 -0.02 1.06 16 42 H 0.40 4.09 7.48 -74.05 -0.55 3.53 16 43 H 0.10 6.12 5.74 -2.91 -0.02 6.10 16 Total: -1.00 -77.01 362.12 0.50 -76.50 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -0.08 Total: 36.61 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 3.53 Total: -28.68 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -2.00 Total: -70.90 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -2.97 Total: -55.81 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -77.01 0.50 -76.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365615665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.024 kcal (2) G-P(sol) polarization free energy of solvation -77.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds