Wall clock time and date at job start Tue Mar 31 2020 22:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48499 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46838 * 299.99670 * 3 2 1 6 6 H 1.48499 * 109.47350 * 59.99508 * 3 2 1 7 7 C 1.39940 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99530 * 197.89903 * 7 2 1 9 9 C 1.41433 * 120.00122 * 17.90855 * 7 2 1 10 10 C 1.40786 * 120.17802 * 204.44536 * 9 7 2 11 11 C 1.37709 * 120.04392 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.40969 * 359.78477 * 11 10 9 13 13 C 1.39883 * 120.35572 * 0.47022 * 12 11 10 14 14 C 1.47886 * 120.02431 * 179.78805 * 13 12 11 15 15 O 1.21549 * 120.00481 * 179.72425 * 14 13 12 16 16 N 1.34784 * 119.99715 * 359.72076 * 14 13 12 17 17 C 1.46503 * 119.99898 * 180.02562 * 16 14 13 18 18 H 1.09006 * 109.72498 * 325.58104 * 17 16 14 19 19 C 1.53408 * 109.69622 * 86.15460 * 17 16 14 20 20 O 1.42824 * 108.37381 * 54.98945 * 19 17 16 21 21 C 1.35842 * 117.86054 * 49.18154 * 20 19 17 22 22 C 1.39151 * 118.49774 * 162.93201 * 21 20 19 23 23 C 1.37969 * 120.20911 * 179.70887 * 22 21 20 24 24 C 1.38285 * 119.96509 * 0.02566 * 23 22 21 25 25 C 1.38110 * 119.98183 * 0.07846 * 24 23 22 26 26 C 1.38368 * 121.80534 * 342.78718 * 21 20 19 27 27 C 1.50765 * 121.40653 * 0.46884 * 26 21 20 28 28 H 1.09008 * 109.43415 * 222.13228 * 27 26 21 29 29 O 1.42898 * 109.43683 * 102.26476 * 27 26 21 30 30 C 1.39028 * 119.95197 * 359.50667 * 13 12 11 31 31 H 0.96997 * 119.99770 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.97536 * 0.02562 * 10 9 7 33 33 H 1.08000 * 119.79474 * 180.02562 * 11 10 9 34 34 H 1.08001 * 119.82147 * 180.23181 * 12 11 10 35 35 H 0.96998 * 120.00232 * 0.02562 * 16 14 13 36 36 H 1.09002 * 109.68130 * 174.70751 * 19 17 16 37 37 H 1.09000 * 109.68416 * 295.26361 * 19 17 16 38 38 H 1.07993 * 119.89344 * 359.73275 * 22 21 20 39 39 H 1.08003 * 120.01780 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.01134 * 180.09838 * 24 23 22 41 41 H 1.07998 * 119.84497 * 180.21732 * 25 24 23 42 42 H 0.96698 * 114.00386 * 59.99652 * 29 27 26 43 43 H 1.08000 * 120.20492 * 180.27607 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8837 2.3963 -1.2126 6 1 1.8836 2.3965 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0487 -1.2345 0.2880 9 6 1.3521 -2.4073 -0.3756 10 6 1.8261 -3.6500 0.0861 11 6 1.1851 -4.8121 -0.2814 12 6 0.0710 -4.7684 -1.1009 13 6 -0.4112 -3.5434 -1.5737 14 6 -1.5996 -3.5056 -2.4531 15 8 -2.0213 -2.4406 -2.8597 16 7 -2.2151 -4.6522 -2.8038 17 6 -3.3921 -4.6149 -3.6753 18 1 -3.9773 -3.7196 -3.4651 19 6 -2.9481 -4.6094 -5.1438 20 8 -2.0999 -5.7376 -5.3619 21 6 -2.5322 -6.9501 -4.9278 22 6 -1.9193 -8.0930 -5.4323 23 6 -2.3263 -9.3423 -5.0113 24 6 -3.3467 -9.4607 -4.0855 25 6 -3.9586 -8.3286 -3.5843 26 6 -3.5546 -7.0718 -4.0035 27 6 -4.2501 -5.8599 -3.4373 28 1 -4.4022 -5.9963 -2.3665 29 8 -5.5161 -5.6949 -4.0792 30 6 0.2241 -2.3609 -1.2116 31 1 -0.4850 0.8400 -0.0004 32 1 2.6924 -3.6918 0.7296 33 1 1.5518 -5.7631 0.0755 34 1 -0.4266 -5.6853 -1.3802 35 1 -1.8788 -5.5022 -2.4791 36 1 -3.8220 -4.6764 -5.7918 37 1 -2.4007 -3.6916 -5.3584 38 1 -1.1224 -8.0018 -6.1553 39 1 -1.8482 -10.2273 -5.4046 40 1 -3.6648 -10.4382 -3.7542 41 1 -4.7529 -8.4235 -2.8587 42 1 -6.1147 -6.4460 -3.9675 43 1 -0.1474 -1.4125 -1.5707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365615666.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:26 Heat of formation + Delta-G solvation = -95.106615 kcal Electronic energy + Delta-G solvation = -28885.682001 eV Core-core repulsion = 24859.664251 eV Total energy + Delta-G solvation = -4026.017749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.24024 -40.70726 -38.94784 -38.42352 -38.04986 -35.85768 -35.50974 -32.85467 -32.03434 -31.34673 -31.25641 -30.41642 -27.23189 -26.57974 -25.08836 -23.94972 -23.45341 -22.82905 -21.44521 -20.92046 -19.62232 -18.98685 -18.49115 -18.06677 -17.65645 -16.99088 -16.94822 -16.55041 -16.45569 -16.25052 -15.84469 -15.59683 -15.36995 -15.05288 -14.88691 -14.73996 -14.65512 -14.37826 -14.28537 -13.52829 -13.39881 -13.26667 -13.04256 -12.92935 -12.79969 -12.58421 -12.32348 -12.19919 -12.14139 -11.92721 -11.78999 -11.52636 -11.13195 -11.09246 -10.89391 -10.32400 -9.89587 -9.51938 -9.41428 -9.18904 -8.68315 -6.39441 0.26189 0.32544 0.45398 0.98349 1.36230 1.45586 1.52479 1.83408 2.02246 2.18417 2.30545 2.75524 2.76847 3.12140 3.38210 3.55230 3.63145 3.68420 3.81641 4.01388 4.20994 4.21989 4.29352 4.35736 4.40062 4.48846 4.55069 4.56623 4.57947 4.74033 4.88840 5.02899 5.06820 5.15633 5.24760 5.30621 5.32341 5.43722 5.49214 5.57130 5.82024 5.84874 5.89729 6.03073 6.25194 6.39388 6.40889 6.60172 6.68807 6.86313 6.92280 7.17386 8.28689 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.002913 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.323298 B = 9611.344473 C =10351.136671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.030 3.970 3 Si 0.983 3.017 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.495 4.495 8 H 0.085 0.915 9 C 0.068 3.932 10 C -0.215 4.215 11 C -0.094 4.094 12 C -0.198 4.198 13 C -0.138 4.138 14 C 0.568 3.432 15 O -0.581 6.581 16 N -0.700 5.700 17 C 0.112 3.888 18 H 0.096 0.904 19 C 0.059 3.941 20 O -0.325 6.325 21 C 0.122 3.878 22 C -0.170 4.170 23 C -0.075 4.075 24 C -0.154 4.154 25 C -0.072 4.072 26 C -0.216 4.216 27 C 0.159 3.841 28 H 0.092 0.908 29 O -0.561 6.561 30 C -0.129 4.129 31 H 0.287 0.713 32 H 0.110 0.890 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.410 0.590 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.130 0.870 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.403 0.597 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.367 -19.001 -7.302 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.174 1.174 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.524 4.524 8 H 0.103 0.897 9 C 0.066 3.934 10 C -0.235 4.235 11 C -0.112 4.112 12 C -0.218 4.218 13 C -0.141 4.141 14 C 0.359 3.641 15 O -0.461 6.461 16 N -0.353 5.353 17 C 0.007 3.993 18 H 0.114 0.886 19 C -0.018 4.018 20 O -0.239 6.239 21 C 0.077 3.923 22 C -0.189 4.189 23 C -0.092 4.092 24 C -0.171 4.171 25 C -0.090 4.090 26 C -0.217 4.217 27 C 0.100 3.900 28 H 0.110 0.890 29 O -0.370 6.370 30 C -0.149 4.149 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.248 0.752 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.148 0.852 39 H 0.173 0.827 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.255 0.745 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.478 -17.497 -7.846 21.390 hybrid contribution 0.092 0.530 0.332 0.632 sum -9.385 -16.967 -7.514 20.795 Atomic orbital electron populations 1.69892 1.09231 1.30597 1.35168 1.26862 0.95420 1.04967 0.91308 0.85150 0.79675 0.76088 0.78783 1.17441 1.19581 1.18799 1.19890 0.98625 0.92159 1.41772 0.89733 1.17942 0.91705 0.93944 0.89814 1.21413 1.03903 0.92691 1.05492 1.20898 0.95196 0.97796 0.97306 1.20771 1.00711 0.94865 1.05466 1.19695 0.96918 0.95594 1.01886 1.18711 0.83066 0.83166 0.79167 1.90676 1.66895 1.31437 1.57125 1.45453 1.29995 1.09037 1.50844 1.21356 0.87148 1.00411 0.90419 0.88564 1.23313 0.95411 0.87335 0.95708 1.86011 1.46200 1.14621 1.77072 1.19143 0.94536 0.85219 0.93423 1.20870 1.03528 0.90741 1.03735 1.21344 0.95859 0.96467 0.95571 1.21408 0.97466 0.99629 0.98641 1.21224 0.99155 0.90251 0.98331 1.20453 1.01657 0.97209 1.02375 1.20386 0.83589 0.89173 0.96885 0.88987 1.86466 1.25094 1.47719 1.77767 1.21436 0.98259 0.96288 0.98923 0.90262 0.87184 0.84405 0.85463 0.75229 0.88957 0.88705 0.85199 0.82746 0.82775 0.82937 0.74500 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.02 10.96 21.83 0.24 -45.78 16 2 C 0.03 1.55 5.14 85.25 0.44 1.99 16 3 Si 0.98 39.82 29.60 68.60 2.03 41.85 16 4 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.50 -27.08 9.05 23.47 0.21 -26.87 16 8 H 0.08 4.37 7.91 -2.91 -0.02 4.34 16 9 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 10 C -0.22 -10.13 9.78 22.77 0.22 -9.90 16 11 C -0.09 -3.79 10.01 22.18 0.22 -3.57 16 12 C -0.20 -8.05 9.55 22.70 0.22 -7.83 16 13 C -0.14 -6.64 5.87 -20.13 -0.12 -6.76 16 14 C 0.57 25.48 7.76 86.80 0.67 26.15 16 15 O -0.58 -30.16 15.99 -3.87 -0.06 -30.22 16 16 N -0.70 -23.51 4.65 -444.59 -2.07 -25.57 16 17 C 0.11 3.29 2.53 45.15 0.11 3.40 16 18 H 0.10 3.20 7.57 -2.38 -0.02 3.18 16 19 C 0.06 1.70 6.69 72.12 0.48 2.19 16 20 O -0.33 -9.66 10.02 -91.77 -0.92 -10.57 16 21 C 0.12 2.99 6.38 22.52 0.14 3.14 16 22 C -0.17 -3.51 9.94 22.43 0.22 -3.29 16 23 C -0.07 -1.08 10.04 22.22 0.22 -0.86 16 24 C -0.15 -1.90 10.04 22.25 0.22 -1.68 16 25 C -0.07 -0.99 9.64 22.30 0.22 -0.78 16 26 C -0.22 -4.32 4.97 -19.75 -0.10 -4.41 16 27 C 0.16 3.35 3.04 29.89 0.09 3.45 16 28 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 29 O -0.56 -10.46 12.99 -148.98 -1.93 -12.40 16 30 C -0.13 -7.21 8.24 23.01 0.19 -7.02 16 31 H 0.29 14.72 8.30 -92.71 -0.77 13.95 16 32 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 33 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.13 4.11 6.38 -2.91 -0.02 4.09 16 35 H 0.41 12.15 6.32 -92.71 -0.59 11.56 16 36 H 0.09 2.37 7.87 -2.39 -0.02 2.36 16 37 H 0.09 3.09 8.14 -2.39 -0.02 3.08 16 38 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 41 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.40 3.62 9.05 -74.06 -0.67 2.95 16 43 H 0.10 6.25 5.74 -2.91 -0.02 6.24 16 Total: -1.00 -72.43 363.53 0.66 -71.76 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -0.18 Total: 39.97 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 3.56 Total: -29.04 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -1.83 Total: -71.35 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -2.92 Total: -53.19 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -72.43 0.66 -71.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365615666.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.344 kcal (2) G-P(sol) polarization free energy of solvation -72.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds