Wall clock time and date at job start Tue Mar 31 2020 22:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86796 * 119.99596 * 2 1 4 4 H 1.48505 * 109.46947 * 239.99872 * 3 2 1 5 5 H 1.48500 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47443 * 119.99704 * 3 2 1 7 7 C 1.40220 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00206 * 197.88107 * 7 2 1 9 9 C 1.41112 * 120.00167 * 17.88634 * 7 2 1 10 10 C 1.40881 * 120.10637 * 204.64219 * 9 7 2 11 11 C 1.36316 * 119.89565 * 179.97438 * 10 9 7 12 12 C 1.40014 * 120.10236 * 359.97438 * 11 10 9 13 13 C 1.47644 * 119.89322 * 179.97438 * 12 11 10 14 14 O 1.21587 * 120.00063 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00088 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99920 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.69416 * 34.99546 * 16 15 13 18 18 C 1.53404 * 109.72988 * 274.41737 * 16 15 13 19 19 O 1.42839 * 108.36453 * 175.53392 * 18 16 15 20 20 C 1.35845 * 117.84833 * 49.19216 * 19 18 16 21 21 C 1.39143 * 118.49384 * 162.96044 * 20 19 18 22 22 C 1.37967 * 120.21555 * 179.75373 * 21 20 19 23 23 C 1.38288 * 119.95752 * 0.02562 * 22 21 20 24 24 C 1.38105 * 119.98408 * 0.07202 * 23 22 21 25 25 C 1.38379 * 121.80994 * 342.86100 * 20 19 18 26 26 C 1.50767 * 121.40727 * 0.32838 * 25 20 19 27 27 H 1.09009 * 109.43519 * 102.37176 * 26 25 20 28 28 O 1.42898 * 109.40343 * 222.26413 * 26 25 20 29 29 C 1.40012 * 120.21159 * 0.26384 * 12 11 10 30 30 C 1.36321 * 120.10542 * 359.47791 * 29 12 11 31 31 H 0.96998 * 120.00210 * 0.02562 * 1 2 3 32 32 H 1.08006 * 120.04983 * 359.95023 * 10 9 7 33 33 H 1.07998 * 119.95009 * 179.97438 * 11 10 9 34 34 H 0.97005 * 119.99702 * 359.97438 * 15 13 12 35 35 H 1.08994 * 109.68704 * 295.26950 * 18 16 15 36 36 H 1.09006 * 109.68123 * 55.82886 * 18 16 15 37 37 H 1.07999 * 119.89343 * 359.78213 * 21 20 19 38 38 H 1.07998 * 120.02216 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.00790 * 180.09940 * 23 22 21 40 40 H 1.08003 * 119.83794 * 180.02562 * 24 23 22 41 41 H 0.96706 * 113.99815 * 300.20448 * 28 26 25 42 42 H 1.08001 * 119.94460 * 179.74141 * 29 12 11 43 43 H 1.07994 * 120.05463 * 180.23749 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0941 1.6966 1.2125 7 6 2.0076 -1.2143 0.0005 8 1 3.0485 -1.2368 0.2877 9 6 1.3533 -2.4071 -0.3743 10 6 1.8267 -3.6493 0.0921 11 6 1.1910 -4.7988 -0.2723 12 6 0.0690 -4.7462 -1.1081 13 6 -0.6156 -5.9941 -1.5003 14 8 -0.2052 -7.0653 -1.0971 15 7 -1.6956 -5.9460 -2.3052 16 6 -2.3746 -7.1843 -2.6948 17 1 -2.3414 -7.8965 -1.8702 18 6 -1.6864 -7.7869 -3.9263 19 8 -2.3030 -9.0420 -4.2173 20 6 -3.6596 -9.0842 -4.2757 21 6 -4.2637 -10.1727 -4.8973 22 6 -5.6389 -10.2543 -4.9722 23 6 -6.4208 -9.2514 -4.4286 24 6 -5.8245 -8.1686 -3.8127 25 6 -4.4445 -8.0810 -3.7350 26 6 -3.8307 -6.8822 -3.0575 27 1 -3.8664 -6.0266 -3.7319 28 8 -4.5642 -6.5814 -1.8686 29 6 -0.4022 -3.5144 -1.5781 30 6 0.2237 -2.3591 -1.2149 31 1 -0.4850 0.8400 -0.0004 32 1 2.6922 -3.6908 0.7369 33 1 1.5534 -5.7517 0.0844 34 1 -2.0233 -5.0914 -2.6266 35 1 -1.8016 -7.1150 -4.7768 36 1 -0.6272 -7.9379 -3.7179 37 1 -3.6541 -10.9565 -5.3221 38 1 -6.1045 -11.1007 -5.4550 39 1 -7.4974 -9.3152 -4.4854 40 1 -6.4374 -7.3870 -3.3886 41 1 -5.4973 -6.3795 -2.0227 42 1 -1.2656 -3.4791 -2.2260 43 1 -0.1427 -1.4092 -1.5749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368228444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:35 Heat of formation + Delta-G solvation = -78.640363 kcal Electronic energy + Delta-G solvation = -28097.357695 eV Core-core repulsion = 24072.053975 eV Total energy + Delta-G solvation = -4025.303719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16162 -39.14590 -37.78110 -37.43040 -36.88689 -34.32397 -33.90563 -31.87344 -30.64573 -30.48544 -29.49355 -29.17242 -25.95400 -25.52468 -23.68159 -22.70678 -21.82403 -21.01620 -20.33458 -19.71110 -18.69728 -17.56670 -17.26473 -16.96337 -16.82174 -16.19117 -15.59519 -15.44910 -15.03699 -14.72136 -14.25218 -14.11664 -13.93411 -13.91998 -13.89540 -13.30492 -13.19414 -12.96574 -12.75695 -12.32957 -12.19286 -12.07288 -11.93745 -11.54107 -11.38937 -11.29306 -11.26565 -11.02688 -10.89336 -10.66617 -10.41133 -10.09152 -9.58815 -9.37821 -9.16099 -9.04543 -8.84309 -8.37532 -7.75352 -7.57948 -7.06609 -4.63464 0.96477 1.14153 2.18755 2.90121 2.92271 2.96104 2.99337 3.01123 3.37337 3.61829 3.70987 3.77875 3.92555 4.31102 4.38898 4.49703 4.58471 4.75171 4.87636 4.91867 5.08138 5.19639 5.20298 5.34113 5.54087 5.55600 5.65245 5.73150 5.97662 6.00570 6.07058 6.10712 6.20721 6.29269 6.46113 6.73543 6.77723 6.79706 7.00300 7.09988 7.21391 7.35019 7.40215 7.60788 7.74582 7.82742 8.03814 8.13790 8.36548 8.59888 8.72068 8.98451 9.85244 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.002246 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.917026 B =12463.273154 C =13144.745134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.441 4.441 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.020 4.020 12 C -0.284 4.284 13 C 0.575 3.425 14 O -0.571 6.571 15 N -0.727 5.727 16 C 0.124 3.876 17 H 0.107 0.893 18 C 0.056 3.944 19 O -0.309 6.309 20 C 0.145 3.855 21 C -0.151 4.151 22 C -0.082 4.082 23 C -0.154 4.154 24 C -0.077 4.077 25 C -0.194 4.194 26 C 0.145 3.855 27 H 0.073 0.927 28 O -0.542 6.542 29 C -0.061 4.061 30 C -0.178 4.178 31 H 0.287 0.713 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.400 0.600 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.376 0.624 42 H 0.088 0.912 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.104 -9.422 -10.663 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.040 4.040 12 C -0.289 4.289 13 C 0.370 3.630 14 O -0.452 6.452 15 N -0.382 5.382 16 C 0.018 3.982 17 H 0.125 0.875 18 C -0.020 4.020 19 O -0.221 6.221 20 C 0.099 3.901 21 C -0.169 4.169 22 C -0.100 4.100 23 C -0.173 4.173 24 C -0.095 4.095 25 C -0.196 4.196 26 C 0.086 3.914 27 H 0.091 0.909 28 O -0.348 6.348 29 C -0.080 4.080 30 C -0.198 4.198 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.236 0.764 35 H 0.087 0.913 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.224 0.776 42 H 0.106 0.894 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.299 -10.276 -10.103 18.312 hybrid contribution -0.632 1.532 -0.300 1.684 sum -11.931 -8.743 -10.403 18.084 Atomic orbital electron populations 1.69737 1.07919 1.30204 1.31494 1.26110 0.94825 1.01922 0.91897 0.86252 0.80206 0.79392 0.80377 1.18456 1.20044 1.18627 1.19830 0.98441 0.91191 1.37398 0.89697 1.17791 0.90370 0.92182 0.87117 1.20714 1.04640 0.92617 1.07851 1.20363 0.92830 0.97199 0.93574 1.18822 1.04552 0.90794 1.14731 1.18646 0.78468 0.89822 0.76062 1.90654 1.66330 1.31667 1.56554 1.45730 1.31723 1.07714 1.52996 1.21258 0.88829 0.89904 0.98248 0.87534 1.23522 0.98751 0.83213 0.96551 1.86057 1.16488 1.33743 1.85837 1.18792 0.82690 0.94301 0.94278 1.20642 0.94899 0.98692 1.02681 1.20970 0.92672 0.98451 0.97950 1.20982 0.99996 0.94974 1.01317 1.20744 0.92867 0.98233 0.97654 1.20485 0.94980 0.98974 1.05182 1.20739 0.90925 0.93345 0.86437 0.90899 1.86701 1.25657 1.91758 1.30677 1.20455 0.97239 0.92583 0.97769 1.20972 0.99922 0.96889 1.01978 0.90136 0.88338 0.88054 0.76418 0.91291 0.85990 0.84957 0.85276 0.85684 0.85865 0.77588 0.89403 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.25 10.95 55.56 0.61 -17.64 16 2 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 3 Si 0.91 17.05 29.60 -169.99 -5.03 12.02 16 4 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 5 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 7 C -0.44 -10.84 9.04 -37.75 -0.34 -11.18 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.24 5.58 -106.80 -0.60 2.65 16 10 C -0.24 -5.73 9.73 -39.27 -0.38 -6.12 16 11 C -0.02 -0.48 9.52 -39.61 -0.38 -0.86 16 12 C -0.28 -6.42 5.89 -104.73 -0.62 -7.04 16 13 C 0.57 12.07 7.74 -12.42 -0.10 11.97 16 14 O -0.57 -13.46 15.99 5.29 0.08 -13.38 16 15 N -0.73 -12.05 5.05 -54.57 -0.28 -12.33 16 16 C 0.12 1.85 2.33 -67.69 -0.16 1.69 16 17 H 0.11 1.93 7.59 -51.93 -0.39 1.54 16 18 C 0.06 0.75 6.63 37.37 0.25 1.00 16 19 O -0.31 -4.25 10.27 -19.25 -0.20 -4.44 16 20 C 0.15 1.81 6.47 -39.19 -0.25 1.55 16 21 C -0.15 -1.56 9.94 -39.34 -0.39 -1.95 16 22 C -0.08 -0.69 10.04 -39.66 -0.40 -1.09 16 23 C -0.15 -1.27 10.04 -39.61 -0.40 -1.67 16 24 C -0.08 -0.70 9.26 -39.53 -0.37 -1.07 16 25 C -0.19 -2.23 5.58 -104.44 -0.58 -2.81 16 26 C 0.15 1.74 3.13 -27.81 -0.09 1.66 16 27 H 0.07 0.75 8.10 -51.92 -0.42 0.33 16 28 O -0.54 -6.76 13.18 -35.23 -0.46 -7.22 16 29 C -0.06 -1.33 9.47 -39.61 -0.38 -1.71 16 30 C -0.18 -4.30 8.63 -39.27 -0.34 -4.64 16 31 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 32 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 33 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 34 H 0.40 5.89 6.58 -40.82 -0.27 5.62 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.12 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.79 6.74 -52.48 -0.35 0.44 16 41 H 0.38 2.89 7.47 45.56 0.34 3.23 16 42 H 0.09 1.61 6.37 -52.49 -0.33 1.27 16 43 H 0.12 2.93 6.15 -52.49 -0.32 2.60 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -30.20 361.86 -9.66 -39.87 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -4.24 Total: 15.67 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -5.60 Total: -18.00 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 0.33 Total: -29.97 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.58 Total: -25.04 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.20 -9.66 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368228444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.775 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds