Wall clock time and date at job start Tue Mar 31 2020 22:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86796 * 119.99596 * 2 1 4 4 H 1.48505 * 109.46947 * 239.99872 * 3 2 1 5 5 H 1.48500 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47443 * 119.99704 * 3 2 1 7 7 C 1.40220 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00206 * 197.88107 * 7 2 1 9 9 C 1.41112 * 120.00167 * 17.88634 * 7 2 1 10 10 C 1.40881 * 120.10637 * 204.64219 * 9 7 2 11 11 C 1.36316 * 119.89565 * 179.97438 * 10 9 7 12 12 C 1.40014 * 120.10236 * 359.97438 * 11 10 9 13 13 C 1.47644 * 119.89322 * 179.97438 * 12 11 10 14 14 O 1.21587 * 120.00063 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00088 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99920 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.69416 * 34.99546 * 16 15 13 18 18 C 1.53404 * 109.72988 * 274.41737 * 16 15 13 19 19 O 1.42839 * 108.36453 * 175.53392 * 18 16 15 20 20 C 1.35845 * 117.84833 * 49.19216 * 19 18 16 21 21 C 1.39143 * 118.49384 * 162.96044 * 20 19 18 22 22 C 1.37967 * 120.21555 * 179.75373 * 21 20 19 23 23 C 1.38288 * 119.95752 * 0.02562 * 22 21 20 24 24 C 1.38105 * 119.98408 * 0.07202 * 23 22 21 25 25 C 1.38379 * 121.80994 * 342.86100 * 20 19 18 26 26 C 1.50767 * 121.40727 * 0.32838 * 25 20 19 27 27 H 1.09009 * 109.43519 * 102.37176 * 26 25 20 28 28 O 1.42898 * 109.40343 * 222.26413 * 26 25 20 29 29 C 1.40012 * 120.21159 * 0.26384 * 12 11 10 30 30 C 1.36321 * 120.10542 * 359.47791 * 29 12 11 31 31 H 0.96998 * 120.00210 * 0.02562 * 1 2 3 32 32 H 1.08006 * 120.04983 * 359.95023 * 10 9 7 33 33 H 1.07998 * 119.95009 * 179.97438 * 11 10 9 34 34 H 0.97005 * 119.99702 * 359.97438 * 15 13 12 35 35 H 1.08994 * 109.68704 * 295.26950 * 18 16 15 36 36 H 1.09006 * 109.68123 * 55.82886 * 18 16 15 37 37 H 1.07999 * 119.89343 * 359.78213 * 21 20 19 38 38 H 1.07998 * 120.02216 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.00790 * 180.09940 * 23 22 21 40 40 H 1.08003 * 119.83794 * 180.02562 * 24 23 22 41 41 H 0.96706 * 113.99815 * 300.20448 * 28 26 25 42 42 H 1.08001 * 119.94460 * 179.74141 * 29 12 11 43 43 H 1.07994 * 120.05463 * 180.23749 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0941 1.6966 1.2125 7 6 2.0076 -1.2143 0.0005 8 1 3.0485 -1.2368 0.2877 9 6 1.3533 -2.4071 -0.3743 10 6 1.8267 -3.6493 0.0921 11 6 1.1910 -4.7988 -0.2723 12 6 0.0690 -4.7462 -1.1081 13 6 -0.6156 -5.9941 -1.5003 14 8 -0.2052 -7.0653 -1.0971 15 7 -1.6956 -5.9460 -2.3052 16 6 -2.3746 -7.1843 -2.6948 17 1 -2.3414 -7.8965 -1.8702 18 6 -1.6864 -7.7869 -3.9263 19 8 -2.3030 -9.0420 -4.2173 20 6 -3.6596 -9.0842 -4.2757 21 6 -4.2637 -10.1727 -4.8973 22 6 -5.6389 -10.2543 -4.9722 23 6 -6.4208 -9.2514 -4.4286 24 6 -5.8245 -8.1686 -3.8127 25 6 -4.4445 -8.0810 -3.7350 26 6 -3.8307 -6.8822 -3.0575 27 1 -3.8664 -6.0266 -3.7319 28 8 -4.5642 -6.5814 -1.8686 29 6 -0.4022 -3.5144 -1.5781 30 6 0.2237 -2.3591 -1.2149 31 1 -0.4850 0.8400 -0.0004 32 1 2.6922 -3.6908 0.7369 33 1 1.5534 -5.7517 0.0844 34 1 -2.0233 -5.0914 -2.6266 35 1 -1.8016 -7.1150 -4.7768 36 1 -0.6272 -7.9379 -3.7179 37 1 -3.6541 -10.9565 -5.3221 38 1 -6.1045 -11.1007 -5.4550 39 1 -7.4974 -9.3152 -4.4854 40 1 -6.4374 -7.3870 -3.3886 41 1 -5.4973 -6.3795 -2.0227 42 1 -1.2656 -3.4791 -2.2260 43 1 -0.1427 -1.4092 -1.5749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368228444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:34 Heat of formation + Delta-G solvation = -98.368822 kcal Electronic energy + Delta-G solvation = -28098.213185 eV Core-core repulsion = 24072.053975 eV Total energy + Delta-G solvation = -4026.159209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11785 -40.70165 -39.02922 -38.59351 -38.09180 -35.70376 -35.67238 -32.93903 -32.06575 -31.31920 -31.29809 -30.46412 -27.67660 -26.47153 -24.81985 -23.68005 -23.21002 -22.77741 -21.50971 -21.20760 -19.58103 -19.37432 -18.65304 -17.99712 -17.88164 -17.33296 -17.06597 -16.53929 -16.21510 -15.77493 -15.70172 -15.60118 -15.19908 -15.15232 -14.87808 -14.79485 -14.51507 -14.29111 -13.90531 -13.84340 -13.71820 -13.22630 -13.20493 -12.94763 -12.85432 -12.64875 -12.37645 -12.33394 -12.11690 -11.90412 -11.80319 -11.38338 -11.29447 -11.12043 -10.75679 -10.27507 -9.87279 -9.58625 -9.43540 -9.21103 -8.80136 -6.49151 0.24038 0.39943 0.41649 1.14674 1.39039 1.44198 1.52337 1.92852 2.07693 2.17088 2.35006 2.67090 2.75775 3.01522 3.39805 3.49432 3.67150 3.70516 3.82067 4.02060 4.15433 4.20094 4.24773 4.30176 4.43544 4.43787 4.46418 4.54362 4.57520 4.75682 4.91678 4.98209 5.02206 5.14482 5.25637 5.28821 5.36080 5.40259 5.53245 5.57760 5.79737 5.80976 5.92398 5.98435 6.21797 6.32911 6.52714 6.60482 6.68445 6.76168 6.87843 7.35086 8.14856 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.002246 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.917026 B =12463.273154 C =13144.745134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.471 4.471 8 H 0.086 0.914 9 C 0.101 3.899 10 C -0.253 4.253 11 C -0.032 4.032 12 C -0.293 4.293 13 C 0.575 3.425 14 O -0.602 6.602 15 N -0.708 5.708 16 C 0.123 3.877 17 H 0.068 0.932 18 C 0.062 3.938 19 O -0.326 6.326 20 C 0.110 3.890 21 C -0.164 4.164 22 C -0.079 4.079 23 C -0.150 4.150 24 C -0.079 4.079 25 C -0.208 4.208 26 C 0.154 3.846 27 H 0.098 0.902 28 O -0.563 6.563 29 C -0.051 4.051 30 C -0.198 4.198 31 H 0.298 0.702 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.412 0.588 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.397 0.603 42 H 0.125 0.875 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.680 -8.632 -12.145 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.498 4.498 8 H 0.104 0.896 9 C 0.098 3.902 10 C -0.273 4.273 11 C -0.052 4.052 12 C -0.298 4.298 13 C 0.370 3.630 14 O -0.487 6.487 15 N -0.362 5.362 16 C 0.017 3.983 17 H 0.086 0.914 18 C -0.014 4.014 19 O -0.239 6.239 20 C 0.065 3.935 21 C -0.182 4.182 22 C -0.097 4.097 23 C -0.168 4.168 24 C -0.097 4.097 25 C -0.210 4.210 26 C 0.094 3.906 27 H 0.115 0.885 28 O -0.373 6.373 29 C -0.070 4.070 30 C -0.217 4.217 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.250 0.750 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.155 0.845 38 H 0.177 0.823 39 H 0.174 0.826 40 H 0.170 0.830 41 H 0.248 0.752 42 H 0.143 0.857 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.935 -9.492 -11.612 20.472 hybrid contribution 0.017 1.146 0.151 1.156 sum -13.918 -8.346 -11.461 19.868 Atomic orbital electron populations 1.69755 1.09214 1.31760 1.31219 1.26934 0.95567 1.04836 0.90825 0.85153 0.78858 0.74943 0.80295 1.18175 1.18738 1.18363 1.20101 0.98799 0.92200 1.38732 0.89627 1.18150 0.91308 0.92835 0.87911 1.20845 1.05216 0.92736 1.08457 1.20506 0.93494 0.97050 0.94107 1.19082 1.04386 0.91925 1.14367 1.18462 0.79334 0.88707 0.76530 1.90637 1.67504 1.32508 1.58005 1.45486 1.30190 1.09135 1.51357 1.21310 0.91314 0.88098 0.97584 0.91356 1.23356 0.97657 0.83817 0.96588 1.86017 1.17873 1.33662 1.86365 1.19168 0.82053 0.95903 0.96331 1.20899 0.96114 0.98372 1.02820 1.21378 0.91792 0.99372 0.97153 1.21427 1.01610 0.94064 0.99733 1.21119 0.92003 0.99351 0.97248 1.20526 0.96080 0.98623 1.05774 1.20621 0.88703 0.94698 0.86569 0.88485 1.86652 1.27479 1.91901 1.31251 1.20712 0.97664 0.91372 0.97226 1.21019 1.00456 0.97451 1.02753 0.89096 0.87811 0.88064 0.75038 0.88902 0.87834 0.84456 0.82343 0.82609 0.83038 0.75169 0.85742 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.59 10.95 21.87 0.24 -37.35 16 2 C 0.04 1.73 5.14 85.35 0.44 2.17 16 3 Si 0.99 34.32 29.60 68.60 2.03 36.35 16 4 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 5 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 6 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 7 C -0.47 -23.61 9.04 23.46 0.21 -23.40 16 8 H 0.09 4.11 7.91 -2.91 -0.02 4.08 16 9 C 0.10 5.23 5.58 -21.28 -0.12 5.12 16 10 C -0.25 -12.60 9.73 22.47 0.22 -12.39 16 11 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 12 C -0.29 -13.39 5.89 -19.93 -0.12 -13.51 16 13 C 0.58 24.52 7.74 86.73 0.67 25.19 16 14 O -0.60 -29.43 15.99 -3.99 -0.06 -29.49 16 15 N -0.71 -23.16 5.05 -444.83 -2.25 -25.41 16 16 C 0.12 3.68 2.33 45.15 0.11 3.79 16 17 H 0.07 2.59 7.59 -2.39 -0.02 2.57 16 18 C 0.06 1.69 6.63 72.12 0.48 2.17 16 19 O -0.33 -9.17 10.27 -91.81 -0.94 -10.11 16 20 C 0.11 2.68 6.47 22.52 0.15 2.83 16 21 C -0.16 -3.19 9.94 22.42 0.22 -2.96 16 22 C -0.08 -1.10 10.04 22.22 0.22 -0.87 16 23 C -0.15 -1.90 10.04 22.25 0.22 -1.68 16 24 C -0.08 -1.19 9.26 22.30 0.21 -0.99 16 25 C -0.21 -4.43 5.58 -19.75 -0.11 -4.54 16 26 C 0.15 3.45 3.13 29.89 0.09 3.54 16 27 H 0.10 1.70 8.10 -2.38 -0.02 1.68 16 28 O -0.56 -13.02 13.18 -148.98 -1.96 -14.98 16 29 C -0.05 -2.20 9.47 22.25 0.21 -1.99 16 30 C -0.20 -9.64 8.63 22.47 0.19 -9.44 16 31 H 0.30 12.48 8.29 -92.71 -0.77 11.71 16 32 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 33 H 0.10 4.80 7.63 -2.91 -0.02 4.78 16 34 H 0.41 11.40 6.58 -92.70 -0.61 10.79 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 36 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 37 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 40 H 0.15 1.30 6.74 -2.91 -0.02 1.28 16 41 H 0.40 4.97 7.47 -74.05 -0.55 4.42 16 42 H 0.12 4.32 6.37 -2.91 -0.02 4.30 16 43 H 0.12 5.67 6.15 -2.91 -0.02 5.65 16 Total: -1.00 -68.10 361.86 0.48 -67.62 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -0.08 Total: 41.70 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 3.51 Total: -28.33 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -2.01 Total: -62.76 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -2.97 Total: -54.58 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Total: -68.10 0.48 -67.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368228444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.749 kcal (2) G-P(sol) polarization free energy of solvation -68.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds