Wall clock time and date at job start Tue Mar 31 2020 22:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30653 * 1 3 3 Si 1.86795 * 120.00417 * 2 1 4 4 H 1.48495 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47194 * 299.99929 * 3 2 1 6 6 H 1.48500 * 109.47176 * 59.99463 * 3 2 1 7 7 C 1.40225 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00100 * 197.87777 * 7 2 1 9 9 C 1.41117 * 120.00101 * 17.87980 * 7 2 1 10 10 C 1.40880 * 120.10532 * 204.62859 * 9 7 2 11 11 C 1.36316 * 119.89401 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.10509 * 0.02562 * 11 10 9 13 13 C 1.47639 * 119.89567 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99987 * 179.72155 * 13 12 11 16 16 C 1.46499 * 119.99700 * 180.27725 * 15 13 12 17 17 H 1.08996 * 109.70026 * 324.44231 * 16 15 13 18 18 C 1.53411 * 109.69777 * 85.00546 * 16 15 13 19 19 O 1.42820 * 108.37696 * 54.98119 * 18 16 15 20 20 C 1.35850 * 117.86676 * 49.18130 * 19 18 16 21 21 C 1.39143 * 118.50264 * 162.82722 * 20 19 18 22 22 C 1.37969 * 120.21098 * 179.83854 * 21 20 19 23 23 C 1.38288 * 119.96418 * 359.96048 * 22 21 20 24 24 C 1.38108 * 119.97510 * 0.07264 * 23 22 21 25 25 C 1.38372 * 121.79936 * 342.76496 * 20 19 18 26 26 C 1.50763 * 121.40507 * 0.52294 * 25 20 19 27 27 H 1.09004 * 109.43714 * 222.07355 * 26 25 20 28 28 O 1.42911 * 109.43874 * 102.20366 * 26 25 20 29 29 C 1.40011 * 120.21097 * 0.25138 * 12 11 10 30 30 C 1.36321 * 120.10573 * 359.44436 * 29 12 11 31 31 H 0.97005 * 119.99250 * 0.02562 * 1 2 3 32 32 H 1.08001 * 120.05439 * 0.04130 * 10 9 7 33 33 H 1.07996 * 119.94808 * 179.97438 * 11 10 9 34 34 H 0.96998 * 119.99768 * 0.28092 * 15 13 12 35 35 H 1.08999 * 109.68211 * 174.70119 * 18 16 15 36 36 H 1.09003 * 109.67997 * 295.25330 * 18 16 15 37 37 H 1.07995 * 119.89743 * 359.82401 * 21 20 19 38 38 H 1.08004 * 120.01654 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.01227 * 180.02562 * 23 22 21 40 40 H 1.08006 * 119.83466 * 180.02562 * 24 23 22 41 41 H 0.96697 * 114.00002 * 59.78505 * 28 26 25 42 42 H 1.07999 * 119.94795 * 179.70262 * 29 12 11 43 43 H 1.08000 * 120.05577 * 180.27441 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 3.7006 1.3462 0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8818 2.3964 1.2124 7 6 2.0076 -1.2144 0.0005 8 1 3.0485 -1.2370 0.2877 9 6 1.3531 -2.4072 -0.3741 10 6 1.8265 -3.6495 0.0920 11 6 1.1913 -4.7990 -0.2731 12 6 0.0703 -4.7464 -1.1103 13 6 -0.6138 -5.9944 -1.5032 14 8 -0.2039 -7.0655 -1.0995 15 7 -1.6965 -5.9458 -2.3045 16 6 -2.3789 -7.1837 -2.6895 17 1 -1.6476 -7.9815 -2.8188 18 6 -3.3873 -7.5777 -1.6026 19 8 -4.2669 -6.4741 -1.3830 20 6 -4.8369 -5.8905 -2.4693 21 6 -5.9495 -5.0769 -2.2787 22 6 -6.5542 -4.4641 -3.3568 23 6 -6.0537 -4.6574 -4.6314 24 6 -4.9500 -5.4648 -4.8241 25 6 -4.3400 -6.0844 -3.7461 26 6 -3.1432 -6.9660 -3.9978 27 1 -2.4875 -6.4883 -4.7258 28 8 -3.5805 -8.2271 -4.5085 29 6 -0.4005 -3.5147 -1.5808 30 6 0.2244 -2.3593 -1.2161 31 1 -0.4849 0.8402 -0.0004 32 1 2.6912 -3.6910 0.7377 33 1 1.5537 -5.7518 0.0834 34 1 -2.0237 -5.0913 -2.6264 35 1 -3.9608 -8.4446 -1.9307 36 1 -2.8582 -7.8149 -0.6796 37 1 -6.3411 -4.9248 -1.2838 38 1 -7.4179 -3.8335 -3.2053 39 1 -6.5262 -4.1777 -5.4757 40 1 -4.5607 -5.6139 -5.8205 41 1 -4.0731 -8.1660 -5.3383 42 1 -1.2627 -3.4794 -2.2303 43 1 -0.1421 -1.4093 -1.5760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368228445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:37 Heat of formation + Delta-G solvation = -97.206646 kcal Electronic energy + Delta-G solvation = -28768.910781 eV Core-core repulsion = 24742.801968 eV Total energy + Delta-G solvation = -4026.108814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20045 -40.60077 -39.01692 -38.41979 -38.02936 -35.69712 -35.65674 -32.82048 -32.03832 -31.33471 -31.28727 -30.51050 -27.68203 -26.53737 -24.74252 -23.71890 -23.45338 -22.82291 -21.56189 -20.84547 -19.38402 -18.99304 -18.64198 -18.45934 -17.65354 -17.19439 -16.92181 -16.50967 -16.30404 -15.83704 -15.76739 -15.68021 -15.30249 -15.04250 -14.86052 -14.72660 -14.65737 -14.42419 -13.92497 -13.69048 -13.45315 -13.25980 -13.20959 -12.95551 -12.85962 -12.65784 -12.38874 -12.30456 -12.14697 -11.77702 -11.76410 -11.39860 -11.14151 -11.11788 -10.80558 -10.23260 -9.90752 -9.60247 -9.44481 -9.19132 -8.81031 -6.50196 0.25165 0.39676 0.44651 1.13258 1.38065 1.41508 1.55520 1.94475 2.07323 2.16809 2.33862 2.74496 2.76545 3.15238 3.40366 3.58254 3.63930 3.68422 3.91231 4.10407 4.20992 4.23759 4.29378 4.32978 4.40247 4.43060 4.49664 4.55858 4.59381 4.76958 4.90328 5.01160 5.01547 5.13051 5.27375 5.29657 5.38779 5.42162 5.55437 5.56576 5.78381 5.83860 5.91260 5.97592 6.20347 6.40762 6.51489 6.54846 6.69701 6.75251 6.86519 7.32612 8.14352 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.003103 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.873252 B = 9022.619284 C =10403.031357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.259 1.259 6 H -0.264 1.264 7 C -0.471 4.471 8 H 0.087 0.913 9 C 0.103 3.897 10 C -0.252 4.252 11 C -0.029 4.029 12 C -0.295 4.295 13 C 0.579 3.421 14 O -0.598 6.598 15 N -0.711 5.711 16 C 0.116 3.884 17 H 0.100 0.900 18 C 0.057 3.943 19 O -0.327 6.327 20 C 0.123 3.877 21 C -0.173 4.173 22 C -0.077 4.077 23 C -0.155 4.155 24 C -0.072 4.072 25 C -0.216 4.216 26 C 0.159 3.841 27 H 0.092 0.908 28 O -0.560 6.560 29 C -0.052 4.052 30 C -0.197 4.197 31 H 0.297 0.703 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.405 0.595 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.403 0.597 42 H 0.114 0.886 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.250 -4.659 -12.051 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.179 1.179 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.105 0.895 9 C 0.100 3.900 10 C -0.272 4.272 11 C -0.049 4.049 12 C -0.299 4.299 13 C 0.373 3.627 14 O -0.482 6.482 15 N -0.364 5.364 16 C 0.010 3.990 17 H 0.118 0.882 18 C -0.019 4.019 19 O -0.241 6.241 20 C 0.078 3.922 21 C -0.192 4.192 22 C -0.094 4.094 23 C -0.173 4.173 24 C -0.090 4.090 25 C -0.218 4.218 26 C 0.099 3.901 27 H 0.110 0.890 28 O -0.369 6.369 29 C -0.071 4.071 30 C -0.216 4.216 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.241 0.759 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.146 0.854 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.172 0.828 41 H 0.254 0.746 42 H 0.132 0.868 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.932 -5.462 -11.049 17.865 hybrid contribution 0.079 0.977 -0.143 0.990 sum -12.853 -4.485 -11.192 17.623 Atomic orbital electron populations 1.69781 1.09322 1.31632 1.31363 1.26953 0.95518 1.04907 0.90748 0.85057 0.79477 0.75401 0.79283 1.17949 1.18364 1.18854 1.20168 0.98810 0.92181 1.38658 0.89524 1.18135 0.91125 0.92953 0.87822 1.20860 1.05234 0.92685 1.08407 1.20498 0.93271 0.97169 0.93931 1.19100 1.04576 0.91899 1.14354 1.18359 0.78880 0.88737 0.76683 1.90616 1.67850 1.32139 1.57548 1.45488 1.29809 1.09255 1.51847 1.21305 0.94827 0.88871 0.93948 0.88168 1.23356 0.90425 0.87588 1.00547 1.86011 1.59768 1.46804 1.31522 1.19131 0.92554 0.94334 0.86207 1.20872 0.95643 1.01461 1.01221 1.21339 0.99288 0.96986 0.91833 1.21408 0.97583 1.00410 0.97905 1.21238 0.94888 0.94557 0.98322 1.20493 1.01687 1.06081 0.93496 1.20399 0.91453 0.84061 0.94140 0.89010 1.86462 1.77077 1.27819 1.45551 1.20647 0.97448 0.91763 0.97269 1.20991 1.00561 0.97247 1.02804 0.89149 0.87613 0.87710 0.75887 0.89054 0.88519 0.85413 0.82906 0.82787 0.82780 0.74561 0.86786 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.27 10.95 21.87 0.24 -38.03 16 2 C 0.04 1.76 5.14 85.35 0.44 2.19 16 3 Si 0.99 34.60 29.60 68.60 2.03 36.63 16 4 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 5 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 6 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 7 C -0.47 -23.79 9.04 23.46 0.21 -23.58 16 8 H 0.09 4.19 7.91 -2.91 -0.02 4.17 16 9 C 0.10 5.37 5.58 -21.28 -0.12 5.25 16 10 C -0.25 -12.59 9.73 22.47 0.22 -12.37 16 11 C -0.03 -1.43 9.52 22.25 0.21 -1.22 16 12 C -0.29 -13.70 5.89 -19.94 -0.12 -13.82 16 13 C 0.58 24.72 7.73 86.73 0.67 25.39 16 14 O -0.60 -28.21 16.00 -4.00 -0.06 -28.27 16 15 N -0.71 -24.13 4.65 -444.81 -2.07 -26.20 16 16 C 0.12 3.37 2.52 45.16 0.11 3.48 16 17 H 0.10 3.16 7.61 -2.39 -0.02 3.14 16 18 C 0.06 1.67 6.68 72.12 0.48 2.15 16 19 O -0.33 -10.27 10.02 -91.87 -0.92 -11.19 16 20 C 0.12 3.29 6.38 22.52 0.14 3.43 16 21 C -0.17 -4.08 9.94 22.42 0.22 -3.85 16 22 C -0.08 -1.33 10.04 22.22 0.22 -1.11 16 23 C -0.16 -2.29 10.05 22.25 0.22 -2.07 16 24 C -0.07 -1.14 9.64 22.30 0.21 -0.92 16 25 C -0.22 -4.68 4.97 -19.75 -0.10 -4.78 16 26 C 0.16 3.42 3.04 29.89 0.09 3.51 16 27 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 28 O -0.56 -10.37 12.99 -148.98 -1.93 -12.31 16 29 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 30 C -0.20 -9.84 8.64 22.47 0.19 -9.65 16 31 H 0.30 12.61 8.29 -92.70 -0.77 11.84 16 32 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 33 H 0.10 4.90 7.63 -2.91 -0.02 4.88 16 34 H 0.40 12.88 6.30 -92.71 -0.58 12.30 16 35 H 0.09 2.35 7.87 -2.39 -0.02 2.33 16 36 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 38 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 40 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.40 3.66 9.05 -74.06 -0.67 2.99 16 42 H 0.11 4.37 6.37 -2.91 -0.02 4.36 16 43 H 0.11 5.73 6.16 -2.91 -0.02 5.72 16 Total: -1.00 -65.46 363.28 0.64 -64.82 By element: Atomic # 1 Polarization: 44.82 SS G_CDS: -0.18 Total: 44.64 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 3.54 Total: -30.09 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -1.83 Total: -64.23 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -2.92 Total: -51.77 kcal Atomic # 14 Polarization: 34.60 SS G_CDS: 2.03 Total: 36.63 kcal Total: -65.46 0.64 -64.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368228445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.386 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds