Wall clock time and date at job start Tue Mar 31 2020 22:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99860 * 2 1 4 4 H 1.48502 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46856 * 299.99566 * 3 2 1 6 6 H 1.48498 * 109.47171 * 59.99743 * 3 2 1 7 7 C 1.37872 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00350 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47087 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47201 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47391 * 180.02562 * 11 10 9 13 13 O 1.42098 * 110.54314 * 68.36735 * 12 11 10 14 14 O 1.42099 * 110.54004 * 291.62198 * 12 11 10 15 15 N 1.65592 * 104.44970 * 179.97438 * 12 11 10 16 16 C 1.46502 * 120.00308 * 65.00093 * 15 12 11 17 17 C 1.52998 * 109.47300 * 164.99752 * 16 15 12 18 18 H 1.08993 * 109.20419 * 305.40366 * 17 16 15 19 19 O 1.42728 * 109.33594 * 65.00041 * 17 16 15 20 20 C 1.43215 * 113.13164 * 171.99203 * 19 17 16 21 21 C 1.52974 * 108.47607 * 289.31461 * 20 19 17 22 22 C 1.50744 * 109.75758 * 49.22284 * 21 20 19 23 23 C 1.38593 * 118.75690 * 163.16355 * 22 21 20 24 24 C 1.38072 * 120.27327 * 179.75052 * 23 22 21 25 25 C 1.38261 * 119.86114 * 359.94163 * 24 23 22 26 26 C 1.38051 * 119.89734 * 0.33776 * 25 24 23 27 27 C 1.37897 * 121.35234 * 342.97682 * 22 21 20 28 28 H 0.96996 * 119.99966 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47076 * 60.00154 * 9 7 2 30 30 H 1.08997 * 109.47402 * 299.99858 * 9 7 2 31 31 H 1.09004 * 109.46886 * 60.00221 * 10 9 7 32 32 H 1.08997 * 109.47033 * 300.00268 * 10 9 7 33 33 H 1.08999 * 109.47655 * 59.99797 * 11 10 9 34 34 H 1.09009 * 109.46801 * 300.00134 * 11 10 9 35 35 H 0.97003 * 120.00371 * 244.99733 * 15 12 11 36 36 H 1.09001 * 109.47127 * 44.99426 * 16 15 12 37 37 H 1.09005 * 109.46894 * 284.99734 * 16 15 12 38 38 H 1.09003 * 109.63436 * 169.62152 * 20 19 17 39 39 H 1.08998 * 109.63751 * 49.01312 * 20 19 17 40 40 H 1.08994 * 109.41995 * 289.13364 * 21 20 19 41 41 H 1.08995 * 109.37118 * 169.27811 * 21 20 19 42 42 H 1.08003 * 119.86647 * 359.76782 * 23 22 21 43 43 H 1.07998 * 120.06888 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.04865 * 180.02562 * 25 24 23 45 45 H 1.07995 * 119.85227 * 179.76556 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4804 -4.9870 0.0020 12 16 2.6592 -6.3659 0.0025 13 8 3.3562 -6.4256 1.2393 14 8 3.3558 -6.4267 -1.2346 15 7 1.7089 -7.7219 0.0037 16 6 0.8490 -8.0149 -1.1456 17 6 0.3756 -9.4679 -1.0711 18 1 1.2423 -10.1236 -0.9882 19 8 -0.4557 -9.6359 0.0769 20 6 -1.0919 -10.9179 0.1282 21 6 -2.1602 -10.9730 -0.9654 22 6 -1.5720 -10.5160 -2.2759 23 6 -2.2450 -10.8164 -3.4497 24 6 -1.7371 -10.4086 -4.6671 25 6 -0.5529 -9.6966 -4.7153 26 6 0.1210 -9.4021 -3.5470 27 6 -0.3895 -9.8082 -2.3236 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5574 -0.8880 30 1 0.6248 -2.5563 0.8919 31 1 2.8727 -3.6038 0.8910 32 1 2.8713 -3.6046 -0.8890 33 1 0.8533 -5.0450 -0.8877 34 1 0.8541 -5.0446 0.8923 35 1 1.7216 -8.3224 0.7654 36 1 1.4101 -7.8624 -2.0675 37 1 -0.0148 -7.3502 -1.1318 38 1 -1.5586 -11.0565 1.1034 39 1 -0.3528 -11.7007 -0.0420 40 1 -2.9907 -10.3214 -0.6939 41 1 -2.5208 -11.9966 -1.0672 42 1 -3.1707 -11.3715 -3.4119 43 1 -2.2640 -10.6448 -5.5797 44 1 -0.1531 -9.3758 -5.6659 45 1 1.0479 -8.8492 -3.5858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371682918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:13 Heat of formation + Delta-G solvation = -109.957002 kcal Electronic energy + Delta-G solvation = -26863.734489 eV Core-core repulsion = 22972.516730 eV Total energy + Delta-G solvation = -3891.217759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.79774 -37.98573 -36.89355 -35.82404 -35.60815 -34.64372 -33.13372 -32.16667 -32.12042 -29.81813 -27.78505 -27.28121 -24.28503 -23.92650 -23.69463 -21.89756 -20.71987 -20.41332 -19.18511 -17.78010 -17.29980 -16.80142 -16.75051 -16.46719 -15.98139 -15.67923 -15.60366 -15.00475 -14.78815 -14.47348 -14.27810 -14.16506 -13.91697 -13.52810 -13.44914 -13.05957 -12.61046 -12.55955 -12.27440 -12.20522 -12.03928 -11.92114 -11.80418 -11.77369 -11.74260 -11.23393 -11.14193 -11.01674 -10.92297 -10.81877 -10.40631 -10.03290 -9.93203 -9.71576 -9.30225 -9.13065 -9.05252 -8.95764 -8.39549 -6.04138 -4.07068 0.48742 0.95028 1.02362 2.83414 3.26957 3.30500 3.37955 3.42147 3.42993 3.96067 4.20597 4.22848 4.38688 4.43783 4.44264 4.48933 4.71742 4.75893 4.83081 4.83581 5.00712 5.05885 5.15291 5.19884 5.22878 5.24373 5.32389 5.40484 5.46757 5.51387 5.61628 5.70448 5.74255 5.93148 6.08211 6.18277 6.19023 6.29530 6.47914 6.62610 6.72910 6.89296 6.95238 7.59470 7.69318 7.94194 8.34685 8.99511 9.57628 11.07133 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.002445 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.285514 B =11451.433317 C =12186.556079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.602 3.398 13 O -0.962 6.962 14 O -0.964 6.964 15 N -1.121 6.121 16 C 0.125 3.875 17 C 0.128 3.872 18 H 0.082 0.918 19 O -0.365 6.365 20 C 0.059 3.941 21 C -0.117 4.117 22 C -0.070 4.070 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.109 4.109 27 C -0.116 4.116 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.021 0.979 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.419 0.581 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 -27.311 -5.518 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.698 3.302 13 O -0.952 6.952 14 O -0.954 6.954 15 N -0.880 5.880 16 C -0.002 4.002 17 C 0.068 3.932 18 H 0.099 0.901 19 O -0.284 6.284 20 C -0.018 4.018 21 C -0.154 4.154 22 C -0.070 4.070 23 C -0.138 4.138 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.127 4.127 27 C -0.117 4.117 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.253 0.747 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.796 -26.956 -5.537 27.933 hybrid contribution -0.509 0.672 -0.012 0.843 sum -5.305 -26.283 -5.550 27.381 Atomic orbital electron populations 1.69968 1.06084 1.26641 1.50734 1.25023 0.94883 0.99371 0.95146 0.86505 0.80196 0.83547 0.77600 1.19603 1.20962 1.20950 1.21296 0.93288 0.90889 1.50849 0.92315 1.19071 0.93547 0.90467 0.97758 1.21501 0.99371 0.91687 1.01962 1.30542 1.16366 1.15809 1.11346 1.05258 0.75573 0.75189 0.74207 1.93580 1.70729 1.85844 1.45089 1.93559 1.70333 1.85772 1.45719 1.55618 1.61850 1.42842 1.27651 1.21439 0.94508 0.94842 0.89396 1.21023 0.92028 0.96837 0.83277 0.90069 1.88121 1.63349 1.34654 1.42266 1.22644 0.94290 0.85523 0.99316 1.21156 0.99490 1.02297 0.92447 1.19476 0.94387 0.97929 0.95203 1.21066 0.99890 1.00878 0.91954 1.21166 0.96258 0.98054 0.97770 1.21154 0.95556 0.98643 0.98382 1.21206 1.00355 0.99485 0.91692 1.20043 0.96223 1.00106 0.95333 0.92969 0.96120 0.96088 0.91554 0.91574 0.85548 0.85151 0.74683 0.88529 0.90387 0.87966 0.92552 0.89398 0.89691 0.85952 0.85876 0.85584 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.03 0.76 4.97 -27.88 -0.14 0.63 16 10 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 11 C -0.61 -9.52 6.07 37.16 0.23 -9.30 16 12 S 2.60 38.38 5.46 -107.50 -0.59 37.80 16 13 O -0.96 -17.07 18.08 -57.54 -1.04 -18.11 16 14 O -0.96 -16.61 17.50 -57.54 -1.01 -17.62 16 15 N -1.12 -12.61 5.85 -10.61 -0.06 -12.67 16 16 C 0.12 1.28 5.50 -4.04 -0.02 1.25 16 17 C 0.13 1.19 2.81 -27.90 -0.08 1.11 16 18 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 19 O -0.37 -3.53 10.23 -35.23 -0.36 -3.90 16 20 C 0.06 0.40 6.85 37.14 0.25 0.66 16 21 C -0.12 -0.77 6.00 -27.87 -0.17 -0.94 16 22 C -0.07 -0.60 5.78 -104.59 -0.60 -1.20 16 23 C -0.12 -0.93 9.67 -39.51 -0.38 -1.31 16 24 C -0.11 -0.87 10.05 -39.63 -0.40 -1.27 16 25 C -0.12 -0.97 10.05 -39.64 -0.40 -1.37 16 26 C -0.11 -0.98 9.08 -39.50 -0.36 -1.34 16 27 C -0.12 -1.08 5.46 -104.61 -0.57 -1.65 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 34 H 0.13 1.87 8.14 -51.92 -0.42 1.44 16 35 H 0.42 4.17 8.47 -34.47 -0.29 3.88 16 36 H 0.10 0.93 5.86 -51.93 -0.30 0.63 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.13 1.04 6.46 -52.49 -0.34 0.70 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -36.11 381.92 -11.59 -47.70 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.81 Total: 1.06 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: -3.19 Total: -30.69 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.67 Total: -38.69 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -2.41 Total: -39.62 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 38.38 SS G_CDS: -0.59 Total: 37.80 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.11 -11.59 -47.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371682918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.262 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds