Wall clock time and date at job start Tue Mar 31 2020 22:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99860 * 2 1 4 4 H 1.48502 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46856 * 299.99566 * 3 2 1 6 6 H 1.48498 * 109.47171 * 59.99743 * 3 2 1 7 7 C 1.37872 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00350 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47087 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47201 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47391 * 180.02562 * 11 10 9 13 13 O 1.42098 * 110.54314 * 68.36735 * 12 11 10 14 14 O 1.42099 * 110.54004 * 291.62198 * 12 11 10 15 15 N 1.65592 * 104.44970 * 179.97438 * 12 11 10 16 16 C 1.46502 * 120.00308 * 65.00093 * 15 12 11 17 17 C 1.52998 * 109.47300 * 164.99752 * 16 15 12 18 18 H 1.08993 * 109.20419 * 305.40366 * 17 16 15 19 19 O 1.42728 * 109.33594 * 65.00041 * 17 16 15 20 20 C 1.43215 * 113.13164 * 171.99203 * 19 17 16 21 21 C 1.52974 * 108.47607 * 289.31461 * 20 19 17 22 22 C 1.50744 * 109.75758 * 49.22284 * 21 20 19 23 23 C 1.38593 * 118.75690 * 163.16355 * 22 21 20 24 24 C 1.38072 * 120.27327 * 179.75052 * 23 22 21 25 25 C 1.38261 * 119.86114 * 359.94163 * 24 23 22 26 26 C 1.38051 * 119.89734 * 0.33776 * 25 24 23 27 27 C 1.37897 * 121.35234 * 342.97682 * 22 21 20 28 28 H 0.96996 * 119.99966 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47076 * 60.00154 * 9 7 2 30 30 H 1.08997 * 109.47402 * 299.99858 * 9 7 2 31 31 H 1.09004 * 109.46886 * 60.00221 * 10 9 7 32 32 H 1.08997 * 109.47033 * 300.00268 * 10 9 7 33 33 H 1.08999 * 109.47655 * 59.99797 * 11 10 9 34 34 H 1.09009 * 109.46801 * 300.00134 * 11 10 9 35 35 H 0.97003 * 120.00371 * 244.99733 * 15 12 11 36 36 H 1.09001 * 109.47127 * 44.99426 * 16 15 12 37 37 H 1.09005 * 109.46894 * 284.99734 * 16 15 12 38 38 H 1.09003 * 109.63436 * 169.62152 * 20 19 17 39 39 H 1.08998 * 109.63751 * 49.01312 * 20 19 17 40 40 H 1.08994 * 109.41995 * 289.13364 * 21 20 19 41 41 H 1.08995 * 109.37118 * 169.27811 * 21 20 19 42 42 H 1.08003 * 119.86647 * 359.76782 * 23 22 21 43 43 H 1.07998 * 120.06888 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.04865 * 180.02562 * 25 24 23 45 45 H 1.07995 * 119.85227 * 179.76556 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4804 -4.9870 0.0020 12 16 2.6592 -6.3659 0.0025 13 8 3.3562 -6.4256 1.2393 14 8 3.3558 -6.4267 -1.2346 15 7 1.7089 -7.7219 0.0037 16 6 0.8490 -8.0149 -1.1456 17 6 0.3756 -9.4679 -1.0711 18 1 1.2423 -10.1236 -0.9882 19 8 -0.4557 -9.6359 0.0769 20 6 -1.0919 -10.9179 0.1282 21 6 -2.1602 -10.9730 -0.9654 22 6 -1.5720 -10.5160 -2.2759 23 6 -2.2450 -10.8164 -3.4497 24 6 -1.7371 -10.4086 -4.6671 25 6 -0.5529 -9.6966 -4.7153 26 6 0.1210 -9.4021 -3.5470 27 6 -0.3895 -9.8082 -2.3236 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5574 -0.8880 30 1 0.6248 -2.5563 0.8919 31 1 2.8727 -3.6038 0.8910 32 1 2.8713 -3.6046 -0.8890 33 1 0.8533 -5.0450 -0.8877 34 1 0.8541 -5.0446 0.8923 35 1 1.7216 -8.3224 0.7654 36 1 1.4101 -7.8624 -2.0675 37 1 -0.0148 -7.3502 -1.1318 38 1 -1.5586 -11.0565 1.1034 39 1 -0.3528 -11.7007 -0.0420 40 1 -2.9907 -10.3214 -0.6939 41 1 -2.5208 -11.9966 -1.0672 42 1 -3.1707 -11.3715 -3.4119 43 1 -2.2640 -10.6448 -5.5797 44 1 -0.1531 -9.3758 -5.6659 45 1 1.0479 -8.8492 -3.5858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371682918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:12 Heat of formation + Delta-G solvation = -134.877683 kcal Electronic energy + Delta-G solvation = -26864.815131 eV Core-core repulsion = 22972.516730 eV Total energy + Delta-G solvation = -3892.298401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40321 -38.60705 -38.20339 -37.08440 -36.51084 -36.46468 -34.16345 -33.76047 -32.77724 -30.40202 -29.65681 -27.99837 -25.62478 -24.86101 -24.57989 -22.56764 -22.41085 -21.08773 -20.32936 -18.81867 -18.55924 -18.08487 -17.68104 -17.42435 -17.04734 -16.77437 -16.47834 -16.37092 -15.98169 -15.59302 -15.35973 -14.82020 -14.68833 -14.49421 -14.24805 -14.17472 -14.00161 -13.70905 -13.52044 -13.31133 -13.21262 -13.12484 -12.99748 -12.85716 -12.77631 -12.74925 -12.60193 -12.45821 -12.15683 -11.82030 -11.74686 -11.55722 -11.37297 -11.12702 -10.64287 -10.58149 -10.43457 -9.72840 -9.55697 -8.22698 -6.33749 -0.74898 0.34163 0.43007 1.39749 1.40264 1.53745 1.74063 2.39830 2.64750 2.73454 2.82677 3.10843 3.21365 3.56335 3.62582 3.76282 3.80767 3.92537 3.94325 4.09359 4.17658 4.25917 4.32546 4.33441 4.40070 4.52782 4.59983 4.63142 4.65942 4.73972 4.86078 4.91006 4.97367 4.99179 5.06998 5.08414 5.17918 5.45721 5.50017 5.60164 5.60310 5.62885 5.79638 6.04863 6.06448 6.13807 6.19639 6.82223 7.35676 8.89089 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.002445 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.285514 B =11451.433317 C =12186.556079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.611 4.611 12 S 2.635 3.365 13 O -0.990 6.990 14 O -0.986 6.986 15 N -1.106 6.106 16 C 0.115 3.885 17 C 0.132 3.868 18 H 0.087 0.913 19 O -0.384 6.384 20 C 0.052 3.948 21 C -0.114 4.114 22 C -0.083 4.083 23 C -0.127 4.127 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.125 4.125 27 C -0.132 4.132 28 H 0.265 0.735 29 H 0.003 0.997 30 H 0.001 0.999 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.427 0.573 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 -28.367 -5.853 29.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.589 4.589 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.742 4.742 12 S 2.730 3.270 13 O -0.980 6.980 14 O -0.976 6.976 15 N -0.867 5.867 16 C -0.011 4.011 17 C 0.073 3.927 18 H 0.105 0.895 19 O -0.303 6.303 20 C -0.024 4.024 21 C -0.151 4.151 22 C -0.084 4.084 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.149 4.149 26 C -0.143 4.143 27 C -0.133 4.133 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.020 0.980 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.264 0.736 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.124 0.876 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.003 -28.016 -5.866 29.058 hybrid contribution -0.524 0.914 0.061 1.055 sum -5.527 -27.102 -5.804 28.263 Atomic orbital electron populations 1.70081 1.07661 1.27824 1.51481 1.25949 0.95818 1.03285 0.94600 0.85416 0.79076 0.78782 0.77899 1.18735 1.20192 1.20245 1.21770 0.93755 0.92468 1.50880 0.92097 1.18970 0.94042 0.91928 0.95867 1.21318 0.98654 0.92365 1.02204 1.30521 1.16754 1.13910 1.13030 1.04084 0.74956 0.75053 0.72902 1.93538 1.71779 1.86376 1.46329 1.93529 1.71151 1.86213 1.46689 1.55224 1.61603 1.41423 1.28482 1.21649 0.94466 0.96013 0.88936 1.20937 0.92320 0.95963 0.83520 0.89506 1.88083 1.63636 1.36227 1.42320 1.22869 0.94546 0.84614 1.00338 1.21187 0.99135 1.03407 0.91393 1.19792 0.94294 0.97844 0.96426 1.21371 1.00537 1.00791 0.91735 1.21487 0.96109 0.97468 0.98711 1.21417 0.95925 0.98790 0.98761 1.21369 1.00802 0.99992 0.92096 1.20137 0.96920 1.00985 0.95293 0.92647 0.97872 0.98023 0.91506 0.91289 0.83814 0.83801 0.73603 0.88025 0.90037 0.86382 0.91789 0.89637 0.87580 0.83971 0.83875 0.84266 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.11 -4.37 5.16 30.59 0.16 -4.21 16 11 C -0.61 -18.79 6.07 71.98 0.44 -18.35 16 12 S 2.64 75.62 5.46 -56.49 -0.31 75.31 16 13 O -0.99 -34.43 18.08 -127.65 -2.31 -36.73 16 14 O -0.99 -33.21 17.50 -127.65 -2.23 -35.45 16 15 N -1.11 -23.60 5.85 -187.48 -1.10 -24.69 16 16 C 0.12 2.25 5.50 86.38 0.48 2.73 16 17 C 0.13 2.33 2.81 29.84 0.08 2.41 16 18 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 19 O -0.38 -6.94 10.23 -148.98 -1.52 -8.46 16 20 C 0.05 0.63 6.85 71.97 0.49 1.12 16 21 C -0.11 -1.31 6.00 29.85 0.18 -1.13 16 22 C -0.08 -1.32 5.78 -19.85 -0.11 -1.43 16 23 C -0.13 -1.74 9.67 22.32 0.22 -1.52 16 24 C -0.12 -1.63 10.05 22.24 0.22 -1.41 16 25 C -0.13 -2.00 10.05 22.23 0.22 -1.78 16 26 C -0.12 -2.15 9.08 22.32 0.20 -1.95 16 27 C -0.13 -2.36 5.46 -19.86 -0.11 -2.47 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 34 H 0.14 4.02 8.14 -2.39 -0.02 4.00 16 35 H 0.43 7.95 8.47 -96.74 -0.82 7.13 16 36 H 0.10 1.88 5.86 -2.39 -0.01 1.87 16 37 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 0.66 8.07 -2.39 -0.02 0.64 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 44 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 45 H 0.13 2.09 6.46 -2.91 -0.02 2.07 16 Total: -1.00 -76.87 381.92 -1.67 -78.55 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.17 Total: 18.01 kcal Atomic # 6 Polarization: -60.39 SS G_CDS: 3.31 Total: -57.08 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -0.81 Total: -80.69 kcal Atomic # 8 Polarization: -74.58 SS G_CDS: -6.07 Total: -80.65 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 75.62 SS G_CDS: -0.31 Total: 75.31 kcal Total: -76.87 -1.67 -78.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371682918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.328 kcal (2) G-P(sol) polarization free energy of solvation -76.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds