Wall clock time and date at job start Tue Mar 31 2020 22:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99795 * 2 1 4 4 H 1.48500 * 109.47468 * 270.00071 * 3 2 1 5 5 H 1.48504 * 109.47529 * 30.00446 * 3 2 1 6 6 H 1.48508 * 109.47021 * 150.00134 * 3 2 1 7 7 C 1.37870 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47201 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47204 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47347 * 180.02562 * 11 10 9 13 13 O 1.42098 * 110.54005 * 291.62146 * 12 11 10 14 14 O 1.42095 * 110.54390 * 68.37239 * 12 11 10 15 15 N 1.65599 * 104.45026 * 179.97438 * 12 11 10 16 16 C 1.47422 * 125.65176 * 269.69075 * 15 12 11 17 17 C 1.55129 * 104.72557 * 155.81707 * 16 15 12 18 18 C 1.55152 * 101.48523 * 37.29554 * 17 16 15 19 19 H 1.09000 * 110.71947 * 82.69723 * 18 17 16 20 20 O 1.42900 * 110.72194 * 205.96699 * 18 17 16 21 21 C 1.35902 * 117.00113 * 269.76362 * 20 18 17 22 22 C 1.38731 * 120.05512 * 5.20782 * 21 20 18 23 23 C 1.38139 * 119.94196 * 179.74266 * 22 21 20 24 24 C 1.38265 * 120.05555 * 0.50965 * 23 22 21 25 25 C 1.38261 * 120.11268 * 359.76124 * 24 23 22 26 26 C 1.38144 * 120.05759 * 359.97438 * 25 24 23 27 27 C 1.47026 * 125.64781 * 90.00044 * 15 12 11 28 28 H 0.96992 * 119.99963 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47272 * 59.99952 * 9 7 2 30 30 H 1.09001 * 109.46594 * 299.99986 * 9 7 2 31 31 H 1.09001 * 109.46965 * 59.99865 * 10 9 7 32 32 H 1.08997 * 109.47041 * 300.00230 * 10 9 7 33 33 H 1.09006 * 109.47069 * 300.00130 * 11 10 9 34 34 H 1.08997 * 109.47233 * 59.99565 * 11 10 9 35 35 H 1.08999 * 110.36713 * 274.75169 * 16 15 12 36 36 H 1.09006 * 110.36590 * 37.06832 * 16 15 12 37 37 H 1.08995 * 111.19077 * 279.19016 * 17 16 15 38 38 H 1.09003 * 110.90345 * 155.27611 * 17 16 15 39 39 H 1.08002 * 120.03041 * 359.97438 * 22 21 20 40 40 H 1.08004 * 119.97227 * 180.23176 * 23 22 21 41 41 H 1.08006 * 119.94651 * 179.74903 * 24 23 22 42 42 H 1.08002 * 119.97266 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.03303 * 179.97438 * 26 25 24 44 44 H 1.09005 * 109.88216 * 300.43435 * 27 15 12 45 45 H 1.08994 * 109.88166 * 61.60348 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 16 2.6591 -6.3659 -0.0037 13 8 3.3558 -6.4257 -1.2408 14 8 3.3559 -6.4267 1.2332 15 7 1.7088 -7.7220 -0.0036 16 6 1.2213 -8.4295 1.1944 17 6 -0.0544 -9.1743 0.7207 18 6 0.3548 -9.6077 -0.7117 19 1 0.9416 -10.5259 -0.6839 20 8 -0.7983 -9.7680 -1.5404 21 6 -1.3690 -11.0010 -1.5718 22 6 -0.8976 -12.0062 -0.7399 23 6 -1.4829 -13.2571 -0.7700 24 6 -2.5307 -13.5107 -1.6358 25 6 -2.9986 -12.5122 -2.4699 26 6 -2.4203 -11.2580 -2.4398 27 6 1.2167 -8.4236 -1.1983 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5563 -0.8920 30 1 0.6241 -2.5574 0.8880 31 1 2.8720 -3.6051 0.8873 32 1 2.8720 -3.6035 -0.8926 33 1 0.8540 -5.0454 0.8869 34 1 0.8534 -5.0443 -0.8930 35 1 1.9695 -9.1398 1.5462 36 1 0.9739 -7.7170 1.9814 37 1 -0.9147 -8.5054 0.6957 38 1 -0.2543 -10.0420 1.3494 39 1 -0.0763 -11.8098 -0.0667 40 1 -1.1188 -14.0389 -0.1199 41 1 -2.9844 -14.4906 -1.6607 42 1 -3.8169 -12.7130 -3.1455 43 1 -2.7858 -10.4784 -3.0918 44 1 0.6109 -7.7477 -1.8019 45 1 2.0582 -8.7935 -1.7838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374223815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:49 Heat of formation + Delta-G solvation = -87.125562 kcal Electronic energy + Delta-G solvation = -26558.259014 eV Core-core repulsion = 22668.031300 eV Total energy + Delta-G solvation = -3890.227714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73366 -38.72972 -37.00424 -36.94310 -35.81417 -34.68525 -32.19714 -31.58491 -30.77928 -30.21588 -28.81569 -27.81972 -23.95563 -23.59501 -22.81911 -22.56655 -21.14109 -20.56299 -19.02715 -18.84489 -17.76181 -16.78892 -16.44144 -16.26241 -16.04960 -15.75445 -15.48013 -15.26122 -14.58601 -14.50637 -14.36781 -14.12788 -13.93696 -13.77086 -13.37408 -13.05262 -12.62266 -12.56920 -12.30965 -12.24739 -12.00311 -11.94170 -11.88191 -11.80766 -11.67926 -11.51812 -11.26512 -11.04023 -10.98676 -10.92872 -10.86809 -10.44658 -9.96779 -9.57208 -9.38069 -9.26155 -8.98967 -8.56327 -8.41551 -6.06388 -4.09621 0.32363 0.96054 1.07504 2.49100 2.89325 3.30052 3.36133 3.40126 3.41802 3.91404 3.96781 4.02849 4.35545 4.41705 4.42338 4.47631 4.57455 4.75754 4.81181 4.95075 5.00655 5.05319 5.08405 5.14255 5.22015 5.26273 5.29980 5.36655 5.42639 5.48221 5.62760 5.69561 5.77998 5.88758 5.95008 6.03318 6.08254 6.16457 6.27224 6.40727 6.42777 6.85267 7.06635 7.55870 7.65538 7.91482 8.31666 8.96592 9.55130 11.04817 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019114 B = 0.002124 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.558414 B =13179.758388 C =14093.593354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.607 4.607 12 S 2.615 3.385 13 O -0.955 6.955 14 O -0.954 6.954 15 N -1.016 6.016 16 C 0.123 3.877 17 C -0.155 4.155 18 C 0.074 3.926 19 H 0.093 0.907 20 O -0.301 6.301 21 C 0.133 3.867 22 C -0.210 4.210 23 C -0.081 4.081 24 C -0.161 4.161 25 C -0.081 4.081 26 C -0.152 4.152 27 C 0.127 3.873 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.083 0.917 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -28.700 -1.122 29.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.739 4.739 12 S 2.713 3.287 13 O -0.946 6.946 14 O -0.945 6.945 15 N -0.853 5.853 16 C -0.002 4.002 17 C -0.194 4.194 18 C 0.017 3.983 19 H 0.111 0.889 20 O -0.214 6.214 21 C 0.088 3.912 22 C -0.228 4.228 23 C -0.099 4.099 24 C -0.179 4.179 25 C -0.099 4.099 26 C -0.171 4.171 27 C 0.001 3.999 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.102 0.898 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.308 -28.365 -1.220 28.716 hybrid contribution -0.278 1.031 0.165 1.080 sum -4.586 -27.334 -1.056 27.736 Atomic orbital electron populations 1.69958 1.06088 1.26797 1.50559 1.25026 0.94903 0.99400 0.95101 0.86544 0.79857 0.83135 0.78195 1.20560 1.21169 1.19747 1.21250 0.93257 0.90873 1.51095 0.92350 1.19064 0.93514 0.90414 0.97758 1.21515 0.99423 0.91640 1.01978 1.30577 1.16374 1.15609 1.11318 1.05105 0.75267 0.74208 0.74154 1.93567 1.69998 1.85676 1.45310 1.93571 1.69842 1.85706 1.45357 1.58839 1.70746 1.43569 1.12196 1.21951 0.94577 0.96284 0.87419 1.23423 0.98997 1.01593 0.95377 1.23476 0.85712 0.99163 0.89985 0.88936 1.86119 1.42429 1.28091 1.64732 1.19035 0.93437 0.84032 0.94730 1.21319 1.03926 0.94430 1.03173 1.20965 0.95277 0.96007 0.97637 1.21083 0.98845 0.99679 0.98329 1.20994 0.98762 0.92126 0.98029 1.20511 0.97506 0.98244 1.00809 1.21491 0.97397 0.93642 0.87371 0.92884 0.96103 0.96108 0.91558 0.91530 0.85420 0.85348 0.90765 0.89725 0.88902 0.89425 0.85257 0.85835 0.85982 0.85369 0.85053 0.89833 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.78 4.97 -27.88 -0.14 0.65 16 10 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 11 C -0.61 -9.36 6.18 37.15 0.23 -9.13 16 12 S 2.61 38.50 5.65 -107.50 -0.61 37.90 16 13 O -0.95 -16.67 17.60 -57.54 -1.01 -17.68 16 14 O -0.95 -16.44 17.60 -57.54 -1.01 -17.45 16 15 N -1.02 -11.41 3.62 -111.29 -0.40 -11.81 16 16 C 0.12 1.09 6.89 -2.41 -0.02 1.07 16 17 C -0.15 -1.15 6.64 -24.47 -0.16 -1.31 16 18 C 0.07 0.62 2.73 -24.90 -0.07 0.55 16 19 H 0.09 0.63 6.25 -51.93 -0.32 0.31 16 20 O -0.30 -2.95 9.86 -19.43 -0.19 -3.14 16 21 C 0.13 1.21 6.67 -39.22 -0.26 0.95 16 22 C -0.21 -1.61 8.91 -39.44 -0.35 -1.96 16 23 C -0.08 -0.55 10.04 -39.61 -0.40 -0.95 16 24 C -0.16 -1.07 10.04 -39.56 -0.40 -1.46 16 25 C -0.08 -0.57 10.04 -39.61 -0.40 -0.96 16 26 C -0.15 -1.28 9.99 -39.43 -0.39 -1.68 16 27 C 0.13 1.27 6.67 -3.06 -0.02 1.24 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.13 1.76 8.14 -51.92 -0.42 1.33 16 34 H 0.13 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.49 7.77 -51.93 -0.40 0.08 16 39 H 0.13 0.79 5.60 -52.49 -0.29 0.50 16 40 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 44 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -35.37 385.37 -11.53 -46.90 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.90 Total: -2.31 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -2.93 Total: -28.93 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.33 Total: -37.72 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -2.22 Total: -38.27 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 38.50 SS G_CDS: -0.61 Total: 37.90 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.37 -11.53 -46.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374223815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.226 kcal (2) G-P(sol) polarization free energy of solvation -35.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds