Wall clock time and date at job start Tue Mar 31 2020 22:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99795 * 2 1 4 4 H 1.48500 * 109.47468 * 270.00071 * 3 2 1 5 5 H 1.48504 * 109.47529 * 30.00446 * 3 2 1 6 6 H 1.48508 * 109.47021 * 150.00134 * 3 2 1 7 7 C 1.37870 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47201 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47204 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47347 * 180.02562 * 11 10 9 13 13 O 1.42098 * 110.54005 * 291.62146 * 12 11 10 14 14 O 1.42095 * 110.54390 * 68.37239 * 12 11 10 15 15 N 1.65599 * 104.45026 * 179.97438 * 12 11 10 16 16 C 1.47422 * 125.65176 * 269.69075 * 15 12 11 17 17 C 1.55129 * 104.72557 * 155.81707 * 16 15 12 18 18 C 1.55152 * 101.48523 * 37.29554 * 17 16 15 19 19 H 1.09000 * 110.71947 * 82.69723 * 18 17 16 20 20 O 1.42900 * 110.72194 * 205.96699 * 18 17 16 21 21 C 1.35902 * 117.00113 * 269.76362 * 20 18 17 22 22 C 1.38731 * 120.05512 * 5.20782 * 21 20 18 23 23 C 1.38139 * 119.94196 * 179.74266 * 22 21 20 24 24 C 1.38265 * 120.05555 * 0.50965 * 23 22 21 25 25 C 1.38261 * 120.11268 * 359.76124 * 24 23 22 26 26 C 1.38144 * 120.05759 * 359.97438 * 25 24 23 27 27 C 1.47026 * 125.64781 * 90.00044 * 15 12 11 28 28 H 0.96992 * 119.99963 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47272 * 59.99952 * 9 7 2 30 30 H 1.09001 * 109.46594 * 299.99986 * 9 7 2 31 31 H 1.09001 * 109.46965 * 59.99865 * 10 9 7 32 32 H 1.08997 * 109.47041 * 300.00230 * 10 9 7 33 33 H 1.09006 * 109.47069 * 300.00130 * 11 10 9 34 34 H 1.08997 * 109.47233 * 59.99565 * 11 10 9 35 35 H 1.08999 * 110.36713 * 274.75169 * 16 15 12 36 36 H 1.09006 * 110.36590 * 37.06832 * 16 15 12 37 37 H 1.08995 * 111.19077 * 279.19016 * 17 16 15 38 38 H 1.09003 * 110.90345 * 155.27611 * 17 16 15 39 39 H 1.08002 * 120.03041 * 359.97438 * 22 21 20 40 40 H 1.08004 * 119.97227 * 180.23176 * 23 22 21 41 41 H 1.08006 * 119.94651 * 179.74903 * 24 23 22 42 42 H 1.08002 * 119.97266 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.03303 * 179.97438 * 26 25 24 44 44 H 1.09005 * 109.88216 * 300.43435 * 27 15 12 45 45 H 1.08994 * 109.88166 * 61.60348 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 16 2.6591 -6.3659 -0.0037 13 8 3.3558 -6.4257 -1.2408 14 8 3.3559 -6.4267 1.2332 15 7 1.7088 -7.7220 -0.0036 16 6 1.2213 -8.4295 1.1944 17 6 -0.0544 -9.1743 0.7207 18 6 0.3548 -9.6077 -0.7117 19 1 0.9416 -10.5259 -0.6839 20 8 -0.7983 -9.7680 -1.5404 21 6 -1.3690 -11.0010 -1.5718 22 6 -0.8976 -12.0062 -0.7399 23 6 -1.4829 -13.2571 -0.7700 24 6 -2.5307 -13.5107 -1.6358 25 6 -2.9986 -12.5122 -2.4699 26 6 -2.4203 -11.2580 -2.4398 27 6 1.2167 -8.4236 -1.1983 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5563 -0.8920 30 1 0.6241 -2.5574 0.8880 31 1 2.8720 -3.6051 0.8873 32 1 2.8720 -3.6035 -0.8926 33 1 0.8540 -5.0454 0.8869 34 1 0.8534 -5.0443 -0.8930 35 1 1.9695 -9.1398 1.5462 36 1 0.9739 -7.7170 1.9814 37 1 -0.9147 -8.5054 0.6957 38 1 -0.2543 -10.0420 1.3494 39 1 -0.0763 -11.8098 -0.0667 40 1 -1.1188 -14.0389 -0.1199 41 1 -2.9844 -14.4906 -1.6607 42 1 -3.8169 -12.7130 -3.1455 43 1 -2.7858 -10.4784 -3.0918 44 1 0.6109 -7.7477 -1.8019 45 1 2.0582 -8.7935 -1.7838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374223815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:48 Heat of formation + Delta-G solvation = -110.020634 kcal Electronic energy + Delta-G solvation = -26559.251819 eV Core-core repulsion = 22668.031300 eV Total energy + Delta-G solvation = -3891.220518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34501 -39.37092 -38.28101 -37.63840 -37.12197 -36.49450 -34.18744 -32.17667 -31.42075 -30.83648 -29.69299 -29.48909 -25.67744 -24.43143 -23.40446 -23.30451 -22.28960 -21.75967 -20.06843 -19.47840 -18.88218 -18.56645 -17.43530 -17.30304 -16.93573 -16.64547 -16.53681 -16.30867 -15.99372 -15.80607 -15.10953 -14.89301 -14.77561 -14.51102 -14.30518 -14.11717 -14.09563 -13.75979 -13.55368 -13.31848 -13.25328 -13.19700 -13.01880 -12.85502 -12.77486 -12.65390 -12.58975 -12.39130 -12.18409 -12.10793 -11.78294 -11.64006 -11.55767 -11.40952 -11.14532 -10.59504 -10.05411 -9.90476 -9.13485 -8.24365 -6.35779 -0.88117 0.43750 0.52568 1.39124 1.40066 1.51103 1.51763 2.18098 2.38464 2.73354 2.88315 3.01217 3.09042 3.29928 3.53988 3.71873 3.83429 3.88195 3.96322 4.06065 4.18492 4.28721 4.33190 4.35268 4.40737 4.49452 4.55306 4.60372 4.69852 4.72599 4.81433 4.83288 4.90791 4.97892 5.05713 5.10333 5.14463 5.27492 5.41342 5.42891 5.53027 5.59662 5.65437 5.77131 5.90496 6.17182 6.47952 6.79860 7.33674 8.87177 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019114 B = 0.002124 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.558414 B =13179.758388 C =14093.593354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.553 4.553 8 H 0.061 0.939 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.610 4.610 12 S 2.647 3.353 13 O -0.983 6.983 14 O -0.977 6.977 15 N -1.012 6.012 16 C 0.112 3.888 17 C -0.146 4.146 18 C 0.077 3.923 19 H 0.111 0.889 20 O -0.318 6.318 21 C 0.111 3.889 22 C -0.215 4.215 23 C -0.086 4.086 24 C -0.165 4.165 25 C -0.086 4.086 26 C -0.173 4.173 27 C 0.117 3.883 28 H 0.265 0.735 29 H 0.001 0.999 30 H 0.003 0.997 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.129 0.871 44 H 0.080 0.920 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 -30.473 -0.542 30.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.591 4.591 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.740 4.740 12 S 2.744 3.256 13 O -0.973 6.973 14 O -0.968 6.968 15 N -0.851 5.851 16 C -0.012 4.012 17 C -0.185 4.185 18 C 0.020 3.980 19 H 0.129 0.871 20 O -0.232 6.232 21 C 0.066 3.934 22 C -0.234 4.234 23 C -0.104 4.104 24 C -0.183 4.183 25 C -0.104 4.104 26 C -0.191 4.191 27 C -0.008 4.008 28 H 0.074 0.926 29 H 0.019 0.981 30 H 0.021 0.979 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.147 0.853 44 H 0.099 0.901 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.127 -30.133 -0.640 30.421 hybrid contribution -0.416 1.465 -0.034 1.524 sum -4.543 -28.668 -0.674 29.034 Atomic orbital electron populations 1.70076 1.07668 1.27930 1.51335 1.25966 0.95848 1.03345 0.94561 0.85449 0.78698 0.78375 0.78568 1.19731 1.20506 1.18810 1.21740 0.93780 0.92448 1.51087 0.92041 1.18961 0.94015 0.91913 0.95837 1.21321 0.98684 0.92350 1.02188 1.30555 1.16765 1.13831 1.12870 1.03888 0.74730 0.74134 0.72856 1.93526 1.71064 1.86237 1.46507 1.93535 1.70727 1.86227 1.46279 1.58460 1.70499 1.42320 1.13852 1.22278 0.95649 0.96694 0.86593 1.23397 0.97843 1.02130 0.95101 1.23493 0.85484 0.99022 0.90045 0.87148 1.86081 1.42930 1.28842 1.65311 1.19261 0.94127 0.84196 0.95797 1.21530 1.04332 0.94424 1.03083 1.21315 0.95069 0.96242 0.97777 1.21432 0.98668 1.00483 0.97749 1.21278 0.99108 0.91650 0.98388 1.20710 0.98087 0.99049 1.01286 1.21660 0.97920 0.94337 0.86898 0.92615 0.98081 0.97880 0.91306 0.91499 0.83765 0.84149 0.89232 0.89134 0.89651 0.86962 0.83803 0.83600 0.83858 0.83534 0.85346 0.90136 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.62 4.97 29.85 0.15 1.77 16 10 C -0.11 -4.36 5.16 30.59 0.16 -4.20 16 11 C -0.61 -18.71 6.18 71.98 0.44 -18.26 16 12 S 2.65 76.36 5.65 -56.49 -0.32 76.04 16 13 O -0.98 -34.03 17.60 -127.65 -2.25 -36.28 16 14 O -0.98 -32.85 17.60 -127.65 -2.25 -35.10 16 15 N -1.01 -21.49 3.62 -506.00 -1.83 -23.32 16 16 C 0.11 1.75 6.89 86.93 0.60 2.35 16 17 C -0.15 -1.86 6.64 32.06 0.21 -1.64 16 18 C 0.08 1.16 2.73 31.78 0.09 1.25 16 19 H 0.11 1.25 6.25 -2.39 -0.01 1.23 16 20 O -0.32 -6.03 9.86 -92.44 -0.91 -6.94 16 21 C 0.11 1.93 6.67 22.51 0.15 2.08 16 22 C -0.22 -2.88 8.91 22.36 0.20 -2.68 16 23 C -0.09 -0.96 10.04 22.25 0.22 -0.74 16 24 C -0.17 -1.83 10.04 22.28 0.22 -1.60 16 25 C -0.09 -1.09 10.04 22.25 0.22 -0.87 16 26 C -0.17 -2.86 9.99 22.37 0.22 -2.63 16 27 C 0.12 2.23 6.67 86.73 0.58 2.81 16 28 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 34 H 0.14 3.93 8.14 -2.39 -0.02 3.92 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 0.90 7.77 -2.39 -0.02 0.88 16 39 H 0.14 1.37 5.60 -2.91 -0.02 1.35 16 40 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.14 0.91 8.06 -2.91 -0.02 0.88 16 42 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 44 H 0.08 1.57 8.06 -2.38 -0.02 1.55 16 45 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -76.33 385.37 -0.11 -76.43 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.97 Total: 11.96 kcal Atomic # 6 Polarization: -57.48 SS G_CDS: 4.17 Total: -53.31 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -1.55 Total: -79.29 kcal Atomic # 8 Polarization: -72.92 SS G_CDS: -5.41 Total: -78.32 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 76.36 SS G_CDS: -0.32 Total: 76.04 kcal Total: -76.33 -0.11 -76.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374223815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.588 kcal (2) G-P(sol) polarization free energy of solvation -76.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds