Wall clock time and date at job start Tue Mar 31 2020 22:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86796 * 120.00332 * 2 1 4 4 H 1.48504 * 109.46737 * 269.99720 * 3 2 1 5 5 H 1.48496 * 109.47070 * 29.99790 * 3 2 1 6 6 H 1.48492 * 109.47205 * 150.00323 * 3 2 1 7 7 C 1.40228 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99995 * 195.02534 * 7 2 1 9 9 C 1.41113 * 119.99904 * 15.03585 * 7 2 1 10 10 C 1.40891 * 120.09627 * 211.95610 * 9 7 2 11 11 C 1.36318 * 119.89063 * 179.97438 * 10 9 7 12 12 C 1.40019 * 120.10512 * 359.97438 * 11 10 9 13 13 C 1.47637 * 119.89454 * 180.02562 * 12 11 10 14 14 O 1.21594 * 120.00070 * 223.10632 * 13 12 11 15 15 N 1.34774 * 120.00360 * 43.10994 * 13 12 11 16 16 C 1.46365 * 119.72860 * 5.15724 * 15 13 12 17 17 C 1.52188 * 111.17818 * 243.97662 * 16 15 13 18 18 O 1.43293 * 110.09701 * 299.04738 * 17 16 15 19 19 C 1.35437 * 115.75447 * 89.02990 * 18 17 16 20 20 C 1.38849 * 120.12697 * 108.64491 * 19 18 17 21 21 C 1.38575 * 119.88141 * 182.16045 * 20 19 18 22 22 O 1.35900 * 119.85217 * 180.09787 * 21 20 19 23 23 C 1.38793 * 120.28736 * 0.11621 * 21 20 19 24 24 C 1.38366 * 119.84112 * 359.06455 * 23 21 20 25 25 C 1.37645 * 119.72745 * 359.93822 * 24 23 21 26 26 C 1.46602 * 119.73579 * 184.88654 * 15 13 12 27 27 C 1.40017 * 120.20983 * 0.04907 * 12 11 10 28 28 C 1.36322 * 120.10239 * 359.95242 * 27 12 11 29 29 H 0.97001 * 119.99369 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.05955 * 359.70500 * 10 9 7 31 31 H 1.07999 * 119.95339 * 179.97438 * 11 10 9 32 32 H 1.08993 * 109.13797 * 4.41240 * 16 15 13 33 33 H 1.09001 * 109.13608 * 123.54127 * 16 15 13 34 34 H 1.09004 * 109.37009 * 59.23833 * 17 16 15 35 35 H 1.09003 * 109.36978 * 178.98040 * 17 16 15 36 36 H 1.07996 * 120.05163 * 2.13223 * 20 19 18 37 37 H 0.96693 * 114.00116 * 270.01786 * 22 21 20 38 38 H 1.07993 * 120.08333 * 179.08279 * 23 21 20 39 39 H 1.08002 * 120.13981 * 179.97438 * 24 23 21 40 40 H 1.09005 * 109.58461 * 219.07885 * 26 15 13 41 41 H 1.09001 * 109.59068 * 339.49813 * 26 15 13 42 42 H 1.07998 * 119.94973 * 179.97438 * 27 12 11 43 43 H 1.08005 * 120.04657 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 2.4881 2.0462 -1.4001 5 1 1.4381 2.6526 0.7000 6 1 3.5381 1.4400 0.6999 7 6 2.0075 -1.2145 0.0005 8 1 3.0598 -1.2304 0.2430 9 6 1.3381 -2.4157 -0.3160 10 6 1.7382 -3.6265 0.2831 11 6 1.0883 -4.7844 -0.0253 12 6 0.0242 -4.7715 -0.9353 13 6 -0.6769 -6.0282 -1.2655 14 8 -0.9687 -6.2764 -2.4195 15 7 -0.9935 -6.9002 -0.2879 16 6 -0.7421 -6.5462 1.1099 17 6 0.2879 -7.4755 1.7357 18 8 -0.1891 -8.8265 1.7119 19 6 0.1143 -9.5383 0.6003 20 6 1.0537 -10.5589 0.6612 21 6 1.3932 -11.2542 -0.4885 22 8 2.3112 -12.2544 -0.4279 23 6 0.8000 -10.9332 -1.7015 24 6 -0.1486 -9.9275 -1.7593 25 6 -0.4986 -9.2526 -0.6119 26 6 -1.5923 -8.1932 -0.6327 27 6 -0.3767 -3.5708 -1.5336 28 6 0.2673 -2.4079 -1.2314 29 1 -0.4849 0.8401 -0.0004 30 1 2.5614 -3.6381 0.9821 31 1 1.3944 -5.7132 0.4330 32 1 -0.3747 -5.5212 1.1584 33 1 -1.6746 -6.6175 1.6697 34 1 1.2205 -7.4116 1.1750 35 1 0.4657 -7.1750 2.7683 36 1 1.5192 -10.8101 1.6027 37 1 3.2216 -11.9619 -0.5716 38 1 1.0779 -11.4672 -2.5981 39 1 -0.6129 -9.6735 -2.7007 40 1 -2.3616 -8.4457 0.0970 41 1 -2.0338 -8.1377 -1.6278 42 1 -1.1977 -3.5657 -2.2352 43 1 -0.0430 -1.4821 -1.6930 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376445899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:57 Heat of formation + Delta-G solvation = -74.897558 kcal Electronic energy + Delta-G solvation = -28929.922800 eV Core-core repulsion = 24904.781381 eV Total energy + Delta-G solvation = -4025.141419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.99562 -40.70182 -39.44640 -38.92998 -37.24886 -36.54792 -35.60894 -32.79473 -31.93812 -31.64458 -31.23420 -29.73220 -28.08361 -26.59005 -24.81693 -23.66894 -23.15400 -22.87404 -22.37073 -20.59821 -19.76349 -19.33906 -18.43844 -17.89901 -17.60720 -17.22876 -17.00596 -16.77986 -16.47263 -15.89445 -15.81664 -15.74964 -15.27477 -15.07135 -14.75229 -14.51575 -14.44296 -14.25542 -13.90461 -13.77044 -13.52428 -13.33393 -13.05038 -12.86803 -12.76616 -12.68315 -12.62277 -12.28837 -12.22654 -11.73693 -11.63834 -11.41965 -11.33663 -11.11996 -10.75204 -9.91593 -9.81827 -9.57281 -9.46195 -9.30870 -8.73906 -6.46562 -0.00574 0.16911 0.51023 1.08608 1.39605 1.43571 1.53318 1.89381 1.97344 2.18317 2.29443 2.70472 2.87034 3.27323 3.59962 3.61278 3.74059 3.83618 3.96001 4.02815 4.11062 4.13456 4.28611 4.36163 4.38521 4.45976 4.56491 4.62573 4.73469 4.85681 4.85937 4.95226 5.04244 5.13781 5.15213 5.24413 5.29559 5.41222 5.50541 5.53156 5.59696 5.73809 5.92402 6.00860 6.20483 6.33670 6.40233 6.56373 6.79096 6.80591 6.88561 7.22818 8.23960 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020625 B = 0.002695 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.270661 B =10388.325139 C =10683.840537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.485 4.485 8 H 0.088 0.912 9 C 0.106 3.894 10 C -0.232 4.232 11 C -0.046 4.046 12 C -0.275 4.275 13 C 0.576 3.424 14 O -0.591 6.591 15 N -0.606 5.606 16 C 0.063 3.937 17 C 0.052 3.948 18 O -0.328 6.328 19 C 0.114 3.886 20 C -0.168 4.168 21 C 0.124 3.876 22 O -0.503 6.503 23 C -0.155 4.155 24 C -0.077 4.077 25 C -0.156 4.156 26 C 0.156 3.844 27 C -0.055 4.055 28 C -0.187 4.187 29 H 0.292 0.708 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.413 0.587 38 H 0.151 0.849 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 -14.911 4.107 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.513 4.513 8 H 0.106 0.894 9 C 0.103 3.897 10 C -0.252 4.252 11 C -0.064 4.064 12 C -0.280 4.280 13 C 0.370 3.630 14 O -0.473 6.473 15 N -0.337 5.337 16 C -0.059 4.059 17 C -0.022 4.022 18 O -0.244 6.244 19 C 0.069 3.931 20 C -0.187 4.187 21 C 0.079 3.921 22 O -0.317 6.317 23 C -0.174 4.174 24 C -0.095 4.095 25 C -0.158 4.158 26 C 0.034 3.966 27 C -0.074 4.074 28 C -0.207 4.207 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.273 0.727 38 H 0.169 0.831 39 H 0.155 0.845 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.526 -15.299 3.829 15.845 hybrid contribution 0.438 1.313 -0.472 1.462 sum 1.964 -13.986 3.357 14.517 Atomic orbital electron populations 1.69769 1.09223 1.31221 1.33582 1.26844 0.95465 1.04671 0.91026 0.85170 0.79278 0.75699 0.79478 1.18994 1.19316 1.17643 1.20016 0.97828 0.91735 1.41705 0.89360 1.18067 0.90363 0.93539 0.87685 1.20998 1.05423 0.92950 1.05798 1.20685 0.93778 0.97604 0.94348 1.19067 1.05829 0.92312 1.10764 1.18691 0.76814 0.83354 0.84150 1.90627 1.57117 1.78093 1.21468 1.47799 1.62431 1.16517 1.06940 1.22447 1.01492 1.01465 0.80529 1.23403 0.95733 0.78882 1.04223 1.86100 1.76675 1.25182 1.36481 1.18440 0.94693 0.93923 0.86017 1.21646 0.98961 0.97941 1.00108 1.18252 0.93409 0.88701 0.91736 1.84763 1.20567 1.32027 1.94338 1.21686 0.98774 0.98478 0.98432 1.20892 0.96574 0.94441 0.97628 1.21006 1.00581 1.00310 0.93927 1.20702 0.93144 0.79588 1.03152 1.20450 0.97755 0.92351 0.96862 1.20795 1.01673 0.96175 1.02050 0.89675 0.86482 0.85608 0.87256 0.89051 0.92162 0.83875 0.83546 0.72714 0.83127 0.84542 0.88072 0.89426 0.89067 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.96 11.30 21.87 0.25 -39.71 16 2 C 0.04 1.74 5.14 85.35 0.44 2.18 16 3 Si 0.98 35.25 29.59 68.60 2.03 37.28 16 4 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 5 H -0.27 -9.22 7.11 99.48 0.71 -8.51 16 6 H -0.25 -8.69 7.11 99.48 0.71 -7.99 16 7 C -0.48 -23.83 9.02 23.46 0.21 -23.62 16 8 H 0.09 4.10 7.89 -2.91 -0.02 4.08 16 9 C 0.11 5.30 5.49 -21.28 -0.12 5.18 16 10 C -0.23 -10.06 9.73 22.47 0.22 -9.84 16 11 C -0.05 -1.79 7.27 22.25 0.16 -1.63 16 12 C -0.28 -11.96 5.04 -19.93 -0.10 -12.06 16 13 C 0.58 23.52 7.25 86.73 0.63 24.15 16 14 O -0.59 -27.45 16.37 -4.01 -0.07 -27.52 16 15 N -0.61 -19.45 2.67 -828.46 -2.22 -21.66 16 16 C 0.06 1.67 5.37 86.14 0.46 2.13 16 17 C 0.05 1.14 6.24 71.71 0.45 1.59 16 18 O -0.33 -7.97 9.90 -87.33 -0.86 -8.83 16 19 C 0.11 2.87 5.59 22.55 0.13 3.00 16 20 C -0.17 -3.72 9.93 22.50 0.22 -3.50 16 21 C 0.12 2.57 6.69 22.48 0.15 2.72 16 22 O -0.50 -8.40 13.49 -92.42 -1.25 -9.65 16 23 C -0.16 -3.26 10.00 22.43 0.22 -3.04 16 24 C -0.08 -1.88 9.71 22.16 0.22 -1.66 16 25 C -0.16 -4.18 5.52 -19.36 -0.11 -4.28 16 26 C 0.16 4.42 5.73 86.12 0.49 4.91 16 27 C -0.05 -2.64 9.59 22.25 0.21 -2.42 16 28 C -0.19 -9.56 8.59 22.47 0.19 -9.36 16 29 H 0.29 12.99 8.29 -92.71 -0.77 12.22 16 30 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 31 H 0.13 4.05 4.99 -2.91 -0.01 4.04 16 32 H 0.11 3.27 4.53 -2.39 -0.01 3.26 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 1.39 6.44 -2.39 -0.02 1.38 16 35 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.41 2.89 9.06 -74.06 -0.67 2.22 16 38 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.14 3.20 8.02 -2.91 -0.02 3.18 16 40 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 41 H 0.09 2.66 6.94 -2.39 -0.02 2.65 16 42 H 0.09 4.33 8.06 -2.91 -0.02 4.30 16 43 H 0.10 5.12 6.62 -2.91 -0.02 5.11 16 Total: -1.00 -64.27 355.97 2.37 -61.90 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.41 Total: 33.78 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 4.08 Total: -25.57 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -1.97 Total: -61.38 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -2.18 Total: -46.01 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Total: -64.27 2.37 -61.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376445899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.001 kcal (2) G-P(sol) polarization free energy of solvation -64.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds