Wall clock time and date at job start Tue Mar 31 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 120.00029 * 2 1 4 4 H 1.48506 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47261 * 299.99959 * 3 2 1 6 6 H 1.48503 * 109.47318 * 60.00347 * 3 2 1 7 7 C 1.38704 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99213 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00194 * 0.27698 * 7 2 1 10 10 C 1.35521 * 116.99808 * 174.62191 * 9 7 2 11 11 C 1.38834 * 120.16168 * 5.92234 * 10 9 7 12 12 C 1.38030 * 120.07070 * 179.97438 * 11 10 9 13 13 C 1.38571 * 120.40148 * 359.97438 * 12 11 10 14 14 C 1.37832 * 120.32453 * 0.02562 * 13 12 11 15 15 C 1.39666 * 119.91910 * 359.72132 * 14 13 12 16 16 C 1.47536 * 120.20095 * 180.25591 * 15 14 13 17 17 O 1.21583 * 120.00194 * 213.58926 * 16 15 14 18 18 N 1.34776 * 119.99644 * 33.58519 * 16 15 14 19 19 C 1.47063 * 136.05983 * 355.00759 * 18 16 15 20 20 C 1.53752 * 87.88822 * 152.96668 * 19 18 16 21 21 O 1.42906 * 114.08522 * 139.78344 * 20 19 18 22 22 C 1.50699 * 114.39678 * 272.67712 * 20 19 18 23 23 C 1.38237 * 119.99792 * 63.31150 * 22 20 19 24 24 C 1.38235 * 119.99851 * 179.74613 * 23 22 20 25 25 C 1.38231 * 120.00191 * 0.52638 * 24 23 22 26 26 C 1.38244 * 119.99749 * 359.75257 * 25 24 23 27 27 C 1.38228 * 120.00111 * 359.97392 * 26 25 24 28 28 C 1.47071 * 136.05666 * 175.38532 * 18 16 15 29 29 H 0.96997 * 119.99418 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.96689 * 359.96877 * 11 10 9 31 31 H 1.08001 * 119.79952 * 179.97438 * 12 11 10 32 32 H 1.07995 * 119.83640 * 179.97438 * 13 12 11 33 33 H 1.07998 * 120.03935 * 179.97438 * 14 13 12 34 34 H 1.08998 * 113.47243 * 267.70316 * 19 18 16 35 35 H 1.09002 * 113.47023 * 38.13757 * 19 18 16 36 36 H 0.96698 * 114.00096 * 86.56867 * 21 20 19 37 37 H 1.08003 * 120.00213 * 359.97438 * 23 22 20 38 38 H 1.07998 * 119.99849 * 180.29840 * 24 23 22 39 39 H 1.07997 * 120.00241 * 179.76757 * 25 24 23 40 40 H 1.08005 * 119.99505 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.00242 * 180.02562 * 27 26 25 42 42 H 1.08999 * 113.46268 * 321.86386 * 28 18 16 43 43 H 1.09000 * 113.46659 * 92.23978 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0087 -1.2013 0.0005 8 1 3.0886 -1.2012 0.0001 9 8 1.3346 -2.3687 -0.0046 10 6 2.0685 -3.5024 -0.1169 11 6 3.4553 -3.4405 -0.0967 12 6 4.2010 -4.5964 -0.2108 13 6 3.5742 -5.8249 -0.3454 14 6 2.1984 -5.9054 -0.3674 15 6 1.4306 -4.7449 -0.2478 16 6 -0.0425 -4.8245 -0.2649 17 8 -0.6943 -3.9245 -0.7582 18 7 -0.6656 -5.8950 0.2663 19 6 -0.2514 -7.1798 0.8499 20 6 -1.5500 -7.1598 1.6729 21 8 -2.1913 -8.4322 1.7815 22 6 -1.4431 -6.4291 2.9866 23 6 -1.1697 -5.0741 3.0035 24 6 -1.0769 -4.4028 4.2083 25 6 -1.2467 -5.0885 5.3965 26 6 -1.5144 -6.4446 5.3797 27 6 -1.6128 -7.1148 4.1748 28 6 -2.0594 -6.2952 0.5114 29 1 -0.4849 0.8401 0.0004 30 1 3.9513 -2.4868 0.0082 31 1 5.2796 -4.5431 -0.1950 32 1 4.1665 -6.7235 -0.4344 33 1 1.7146 -6.8652 -0.4730 34 1 -0.2095 -7.9925 0.1248 35 1 0.6507 -7.1098 1.4578 36 1 -1.8682 -8.9743 2.5141 37 1 -1.0322 -4.5393 2.0754 38 1 -0.8681 -3.3433 4.2214 39 1 -1.1705 -4.5647 6.3379 40 1 -1.6467 -6.9804 6.3081 41 1 -1.8224 -8.1742 4.1616 42 1 -2.6977 -5.4715 0.8309 43 1 -2.4946 -6.8739 -0.3034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377080875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:04 Heat of formation + Delta-G solvation = 2.619308 kcal Electronic energy + Delta-G solvation = -29475.944609 eV Core-core repulsion = 25454.164574 eV Total energy + Delta-G solvation = -4021.780035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07107 -39.34150 -38.36903 -37.25858 -36.37331 -35.49368 -32.37828 -31.34934 -30.82026 -30.61862 -29.00998 -28.04219 -26.11949 -25.38292 -23.70464 -22.55511 -22.38525 -21.47650 -20.41524 -18.94490 -18.25211 -18.07499 -17.27645 -16.49365 -15.94227 -15.68773 -15.39065 -14.89360 -14.76304 -14.66680 -14.25466 -14.12854 -13.95865 -13.69162 -13.38377 -13.24878 -13.22106 -12.99652 -12.73475 -12.47732 -12.43039 -12.04825 -11.78030 -11.72401 -11.38312 -11.14013 -11.03755 -10.95373 -10.87894 -10.77929 -10.47296 -10.19513 -9.63101 -9.06231 -8.91041 -8.88929 -8.71365 -8.39521 -8.29326 -7.35790 -6.48628 -4.08714 1.26977 1.43713 1.71283 2.27000 3.04289 3.09195 3.10918 3.16355 3.49484 3.67971 3.90515 4.07424 4.28414 4.45332 4.52463 4.80193 4.90727 4.99815 5.03669 5.13177 5.18284 5.25422 5.46523 5.49110 5.50119 5.53247 5.62953 5.68379 5.75614 5.78375 5.89063 5.97864 6.09447 6.10508 6.19197 6.43192 6.53226 6.56875 6.63141 6.67443 6.90549 7.00710 7.02861 7.21168 7.26796 7.35848 7.64752 7.89757 8.09490 8.86810 8.93006 9.61385 10.66040 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.004136 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.471660 B = 6767.929210 C = 7836.791761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.401 4.401 8 H 0.095 0.905 9 O -0.138 6.138 10 C 0.191 3.809 11 C -0.236 4.236 12 C -0.051 4.051 13 C -0.228 4.228 14 C -0.039 4.039 15 C -0.217 4.217 16 C 0.598 3.402 17 O -0.500 6.500 18 N -0.645 5.645 19 C 0.084 3.916 20 C 0.131 3.869 21 O -0.537 6.537 22 C -0.095 4.095 23 C -0.090 4.090 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.115 4.115 28 C 0.123 3.877 29 H 0.271 0.729 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.378 0.622 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -15.194 8.298 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.112 0.888 9 O -0.037 6.037 10 C 0.132 3.868 11 C -0.256 4.256 12 C -0.070 4.070 13 C -0.247 4.247 14 C -0.058 4.058 15 C -0.222 4.222 16 C 0.391 3.609 17 O -0.373 6.373 18 N -0.386 5.386 19 C -0.040 4.040 20 C 0.089 3.911 21 O -0.343 6.343 22 C -0.095 4.095 23 C -0.108 4.108 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.142 4.142 27 C -0.133 4.133 28 C 0.000 4.000 29 H 0.081 0.919 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.227 0.773 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.103 0.897 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.819 -13.985 7.413 15.849 hybrid contribution 0.946 0.521 0.449 1.170 sum 0.128 -13.464 7.862 15.592 Atomic orbital electron populations 1.70111 1.05982 1.27711 1.43130 1.25375 0.95815 0.98934 0.96149 0.85656 0.79192 0.80243 0.78382 1.18956 1.19967 1.20030 1.21490 0.91888 0.80810 1.53458 0.88776 1.84060 1.33989 1.11227 1.74451 1.19187 0.89924 0.87090 0.90616 1.21138 0.93245 0.99393 1.11784 1.20904 0.98682 0.92289 0.95074 1.20474 0.93972 0.97193 1.13057 1.20835 0.93780 0.95609 0.95585 1.18630 0.91126 0.92317 1.20113 1.17741 0.87299 0.79265 0.76590 1.90910 1.66784 1.36567 1.43015 1.49202 1.08195 1.17106 1.64125 1.23725 0.98272 0.86718 0.95298 1.21460 0.93859 0.84071 0.91750 1.86556 1.65005 1.27355 1.55344 1.19628 1.02276 0.94433 0.93174 1.21302 0.96601 0.93524 0.99349 1.21307 0.98858 1.00616 0.92221 1.21217 0.99539 0.94563 0.98185 1.21024 1.00960 0.94697 0.97505 1.20768 1.01086 0.99522 0.91932 1.22882 0.86247 0.96251 0.94600 0.91870 0.84986 0.87116 0.87211 0.86849 0.89045 0.89858 0.77265 0.84893 0.85497 0.86083 0.86078 0.86205 0.89685 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.97 13.67 55.48 0.76 -24.22 16 2 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16 3 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.40 -11.21 9.49 30.90 0.29 -10.91 16 8 H 0.09 2.40 5.21 -52.49 -0.27 2.12 16 9 O -0.14 -4.02 8.35 -17.47 -0.15 -4.16 16 10 C 0.19 4.69 6.62 -38.60 -0.26 4.44 16 11 C -0.24 -5.04 9.16 -39.44 -0.36 -5.40 16 12 C -0.05 -0.89 10.03 -39.53 -0.40 -1.29 16 13 C -0.23 -3.75 10.02 -39.61 -0.40 -4.15 16 14 C -0.04 -0.69 8.69 -39.20 -0.34 -1.03 16 15 C -0.22 -4.76 5.80 -104.81 -0.61 -5.37 16 16 C 0.60 13.41 6.72 -12.47 -0.08 13.32 16 17 O -0.50 -13.75 16.65 -12.98 -0.22 -13.97 16 18 N -0.65 -11.09 2.43 -186.31 -0.45 -11.54 16 19 C 0.08 1.07 5.72 -8.38 -0.05 1.02 16 20 C 0.13 1.61 2.05 -91.13 -0.19 1.42 16 21 O -0.54 -5.44 13.32 -35.23 -0.47 -5.91 16 22 C -0.09 -1.25 5.33 -104.62 -0.56 -1.81 16 23 C -0.09 -1.45 8.76 -39.58 -0.35 -1.79 16 24 C -0.11 -1.67 10.05 -39.58 -0.40 -2.07 16 25 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 26 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 27 C -0.12 -1.24 9.38 -39.58 -0.37 -1.61 16 28 C 0.12 1.83 7.48 -8.51 -0.06 1.77 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.11 1.65 6.24 -52.49 -0.33 1.33 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.05 7.56 -51.93 -0.39 0.66 16 36 H 0.38 2.32 7.17 45.56 0.33 2.64 16 37 H 0.13 2.61 5.48 -52.48 -0.29 2.32 16 38 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.12 0.88 6.36 -52.49 -0.33 0.55 16 42 H 0.08 1.36 7.68 -51.93 -0.40 0.96 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 362.39 15.07 5.46 5.46 Total: -1.00 -35.11 362.39 -9.18 -44.29 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.08 Total: 10.52 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -5.01 Total: -15.85 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.31 Total: -35.76 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.83 Total: -24.04 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.11 -9.18 -44.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377080875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.909 kcal (2) G-P(sol) polarization free energy of solvation -35.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds