Wall clock time and date at job start Tue Mar 31 2020 22:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 120.00029 * 2 1 4 4 H 1.48506 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47261 * 299.99959 * 3 2 1 6 6 H 1.48503 * 109.47318 * 60.00347 * 3 2 1 7 7 C 1.38704 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99213 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00194 * 0.27698 * 7 2 1 10 10 C 1.35521 * 116.99808 * 174.62191 * 9 7 2 11 11 C 1.38834 * 120.16168 * 5.92234 * 10 9 7 12 12 C 1.38030 * 120.07070 * 179.97438 * 11 10 9 13 13 C 1.38571 * 120.40148 * 359.97438 * 12 11 10 14 14 C 1.37832 * 120.32453 * 0.02562 * 13 12 11 15 15 C 1.39666 * 119.91910 * 359.72132 * 14 13 12 16 16 C 1.47536 * 120.20095 * 180.25591 * 15 14 13 17 17 O 1.21583 * 120.00194 * 213.58926 * 16 15 14 18 18 N 1.34776 * 119.99644 * 33.58519 * 16 15 14 19 19 C 1.47063 * 136.05983 * 355.00759 * 18 16 15 20 20 C 1.53752 * 87.88822 * 152.96668 * 19 18 16 21 21 O 1.42906 * 114.08522 * 139.78344 * 20 19 18 22 22 C 1.50699 * 114.39678 * 272.67712 * 20 19 18 23 23 C 1.38237 * 119.99792 * 63.31150 * 22 20 19 24 24 C 1.38235 * 119.99851 * 179.74613 * 23 22 20 25 25 C 1.38231 * 120.00191 * 0.52638 * 24 23 22 26 26 C 1.38244 * 119.99749 * 359.75257 * 25 24 23 27 27 C 1.38228 * 120.00111 * 359.97392 * 26 25 24 28 28 C 1.47071 * 136.05666 * 175.38532 * 18 16 15 29 29 H 0.96997 * 119.99418 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.96689 * 359.96877 * 11 10 9 31 31 H 1.08001 * 119.79952 * 179.97438 * 12 11 10 32 32 H 1.07995 * 119.83640 * 179.97438 * 13 12 11 33 33 H 1.07998 * 120.03935 * 179.97438 * 14 13 12 34 34 H 1.08998 * 113.47243 * 267.70316 * 19 18 16 35 35 H 1.09002 * 113.47023 * 38.13757 * 19 18 16 36 36 H 0.96698 * 114.00096 * 86.56867 * 21 20 19 37 37 H 1.08003 * 120.00213 * 359.97438 * 23 22 20 38 38 H 1.07998 * 119.99849 * 180.29840 * 24 23 22 39 39 H 1.07997 * 120.00241 * 179.76757 * 25 24 23 40 40 H 1.08005 * 119.99505 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.00242 * 180.02562 * 27 26 25 42 42 H 1.08999 * 113.46268 * 321.86386 * 28 18 16 43 43 H 1.09000 * 113.46659 * 92.23978 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0087 -1.2013 0.0005 8 1 3.0886 -1.2012 0.0001 9 8 1.3346 -2.3687 -0.0046 10 6 2.0685 -3.5024 -0.1169 11 6 3.4553 -3.4405 -0.0967 12 6 4.2010 -4.5964 -0.2108 13 6 3.5742 -5.8249 -0.3454 14 6 2.1984 -5.9054 -0.3674 15 6 1.4306 -4.7449 -0.2478 16 6 -0.0425 -4.8245 -0.2649 17 8 -0.6943 -3.9245 -0.7582 18 7 -0.6656 -5.8950 0.2663 19 6 -0.2514 -7.1798 0.8499 20 6 -1.5500 -7.1598 1.6729 21 8 -2.1913 -8.4322 1.7815 22 6 -1.4431 -6.4291 2.9866 23 6 -1.1697 -5.0741 3.0035 24 6 -1.0769 -4.4028 4.2083 25 6 -1.2467 -5.0885 5.3965 26 6 -1.5144 -6.4446 5.3797 27 6 -1.6128 -7.1148 4.1748 28 6 -2.0594 -6.2952 0.5114 29 1 -0.4849 0.8401 0.0004 30 1 3.9513 -2.4868 0.0082 31 1 5.2796 -4.5431 -0.1950 32 1 4.1665 -6.7235 -0.4344 33 1 1.7146 -6.8652 -0.4730 34 1 -0.2095 -7.9925 0.1248 35 1 0.6507 -7.1098 1.4578 36 1 -1.8682 -8.9743 2.5141 37 1 -1.0322 -4.5393 2.0754 38 1 -0.8681 -3.3433 4.2214 39 1 -1.1705 -4.5647 6.3379 40 1 -1.6467 -6.9804 6.3081 41 1 -1.8224 -8.1742 4.1616 42 1 -2.6977 -5.4715 0.8309 43 1 -2.4946 -6.8739 -0.3034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377080875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:03 Heat of formation + Delta-G solvation = -22.153423 kcal Electronic energy + Delta-G solvation = -29477.018835 eV Core-core repulsion = 25454.164574 eV Total energy + Delta-G solvation = -4022.854262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.29230 -40.95910 -39.68008 -38.72740 -38.07381 -36.58523 -34.37355 -32.69844 -31.96323 -31.78396 -30.65891 -29.41452 -27.49331 -27.16398 -25.00366 -23.86434 -23.46476 -23.11586 -21.64472 -20.31685 -19.92616 -19.25015 -18.86903 -18.07696 -17.26025 -16.90775 -16.68676 -16.37247 -16.23441 -16.04987 -15.65296 -15.55791 -15.52379 -15.17613 -14.78696 -14.53444 -14.46994 -14.24420 -14.23205 -13.94865 -13.60004 -13.54433 -13.16944 -13.05886 -12.81694 -12.65986 -12.58675 -12.38607 -12.12709 -12.05536 -11.90822 -11.49542 -11.25417 -10.88569 -10.75660 -9.95703 -9.91236 -9.76222 -9.70959 -9.08522 -8.49583 -6.20607 0.11861 0.25584 0.40496 0.66762 1.29190 1.39938 1.49421 1.65767 1.88954 2.12249 2.64095 2.79657 3.06051 3.13427 3.25208 3.38021 3.43919 3.61239 3.85954 4.02653 4.05104 4.17843 4.21253 4.21875 4.34981 4.40817 4.44699 4.49830 4.52410 4.56636 4.64085 4.74397 4.79954 4.94191 5.00446 5.04731 5.04812 5.12597 5.45063 5.46140 5.53691 5.57242 5.58829 5.65037 5.92586 6.01110 6.12277 6.60682 6.74351 6.90542 7.21992 7.73814 8.71951 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.004136 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.471660 B = 6767.929210 C = 7836.791761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.023 4.023 3 Si 1.023 2.977 4 H -0.244 1.244 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.423 4.423 8 H 0.108 0.892 9 O -0.202 6.202 10 C 0.149 3.851 11 C -0.253 4.253 12 C -0.041 4.041 13 C -0.195 4.195 14 C -0.034 4.034 15 C -0.234 4.234 16 C 0.592 3.408 17 O -0.576 6.576 18 N -0.645 5.645 19 C 0.086 3.914 20 C 0.160 3.840 21 O -0.529 6.529 22 C -0.103 4.103 23 C -0.122 4.122 24 C -0.143 4.143 25 C -0.115 4.115 26 C -0.113 4.113 27 C -0.101 4.101 28 C 0.108 3.892 29 H 0.271 0.729 30 H 0.125 0.875 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.402 0.598 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.144 0.856 40 H 0.165 0.835 41 H 0.169 0.831 42 H 0.055 0.945 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.949 -20.886 10.132 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.167 1.167 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.499 4.499 8 H 0.125 0.875 9 O -0.106 6.106 10 C 0.095 3.905 11 C -0.273 4.273 12 C -0.059 4.059 13 C -0.213 4.213 14 C -0.052 4.052 15 C -0.238 4.238 16 C 0.385 3.615 17 O -0.456 6.456 18 N -0.382 5.382 19 C -0.036 4.036 20 C 0.117 3.883 21 O -0.338 6.338 22 C -0.103 4.103 23 C -0.140 4.140 24 C -0.161 4.161 25 C -0.133 4.133 26 C -0.131 4.131 27 C -0.118 4.118 28 C -0.015 4.015 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.174 0.826 32 H 0.184 0.816 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.109 0.891 36 H 0.255 0.745 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.161 0.839 40 H 0.182 0.818 41 H 0.186 0.814 42 H 0.074 0.926 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.957 -19.823 9.292 21.980 hybrid contribution 0.167 1.772 -0.046 1.781 sum 2.124 -18.051 9.246 20.392 Atomic orbital electron populations 1.70312 1.08449 1.28576 1.47340 1.26776 0.96737 1.03156 0.95501 0.84496 0.78507 0.74379 0.78529 1.16654 1.19533 1.19190 1.22039 0.92684 0.81485 1.53656 0.87454 1.84070 1.35677 1.12450 1.78384 1.19967 0.91742 0.87137 0.91682 1.21295 0.92078 1.01093 1.12790 1.21443 1.00806 0.91128 0.92479 1.21181 0.93583 0.98634 1.07945 1.21306 0.94536 0.95364 0.94041 1.19073 0.91476 0.93145 1.20104 1.17955 0.87776 0.79598 0.76157 1.90855 1.68224 1.39604 1.46880 1.49035 1.09833 1.17430 1.61922 1.24083 0.98805 0.84810 0.95896 1.20856 0.92791 0.84546 0.90122 1.86545 1.64608 1.25924 1.56718 1.19735 1.02526 0.93012 0.95035 1.21030 0.99937 0.95401 0.97644 1.21262 1.01310 0.99912 0.93655 1.21486 0.98551 0.95801 0.97458 1.21548 0.98457 0.93752 0.99324 1.21286 0.98473 1.01612 0.90463 1.23151 0.85062 0.96312 0.96974 0.92033 0.85729 0.82553 0.81600 0.82951 0.85370 0.89086 0.74511 0.90073 0.88173 0.83859 0.81790 0.81359 0.92597 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.55 13.67 21.62 0.30 -60.25 16 2 C -0.02 -1.39 5.49 84.85 0.47 -0.92 16 3 Si 1.02 44.93 29.55 68.60 2.03 46.95 16 4 H -0.24 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.42 -25.96 9.49 67.93 0.64 -25.32 16 8 H 0.11 5.91 5.21 -2.91 -0.02 5.89 16 9 O -0.20 -13.13 8.35 -2.56 -0.02 -13.16 16 10 C 0.15 7.89 6.62 22.91 0.15 8.04 16 11 C -0.25 -11.01 9.16 22.36 0.20 -10.81 16 12 C -0.04 -1.28 10.03 22.30 0.22 -1.05 16 13 C -0.20 -5.37 10.02 22.25 0.22 -5.14 16 14 C -0.03 -1.10 8.69 22.52 0.20 -0.91 16 15 C -0.23 -10.67 5.80 -19.99 -0.12 -10.79 16 16 C 0.59 28.87 6.72 86.70 0.58 29.45 16 17 O -0.58 -35.82 16.65 13.50 0.22 -35.59 16 18 N -0.64 -23.07 2.43 -862.11 -2.09 -25.16 16 19 C 0.09 1.96 5.72 83.26 0.48 2.44 16 20 C 0.16 3.60 2.05 -11.12 -0.02 3.57 16 21 O -0.53 -8.12 13.32 -148.98 -1.98 -10.11 16 22 C -0.10 -2.61 5.33 -19.86 -0.11 -2.72 16 23 C -0.12 -4.31 8.76 22.27 0.20 -4.11 16 24 C -0.14 -4.71 10.05 22.27 0.22 -4.49 16 25 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 26 C -0.11 -1.95 10.05 22.27 0.22 -1.72 16 27 C -0.10 -1.73 9.38 22.27 0.21 -1.52 16 28 C 0.11 3.32 7.48 83.17 0.62 3.95 16 29 H 0.27 16.46 8.31 -92.71 -0.77 15.69 16 30 H 0.13 5.47 5.64 -2.91 -0.02 5.45 16 31 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 32 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.15 3.69 6.24 -2.91 -0.02 3.67 16 34 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.09 1.98 7.56 -2.39 -0.02 1.96 16 36 H 0.40 2.19 7.17 -74.06 -0.53 1.66 16 37 H 0.08 3.71 5.48 -2.91 -0.02 3.69 16 38 H 0.10 3.64 8.06 -2.91 -0.02 3.61 16 39 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 41 H 0.17 1.24 6.36 -2.91 -0.02 1.23 16 42 H 0.06 2.03 7.68 -2.39 -0.02 2.01 16 43 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -95.25 362.39 3.61 -91.64 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.54 Total: 30.20 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 4.62 Total: -24.52 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -1.80 Total: -85.42 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -1.78 Total: -58.86 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -95.25 3.61 -91.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377080875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.486 kcal (2) G-P(sol) polarization free energy of solvation -95.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds