Wall clock time and date at job start Tue Mar 31 2020 22:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.46866 * 274.66199 * 3 2 1 5 5 H 1.48498 * 109.46883 * 34.65488 * 3 2 1 6 6 H 1.48493 * 109.47470 * 154.65968 * 3 2 1 7 7 C 1.39940 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00139 * 162.10605 * 7 2 1 9 9 C 1.41396 * 120.00247 * 342.11422 * 7 2 1 10 10 C 1.40716 * 120.23809 * 335.43838 * 9 7 2 11 11 C 1.37624 * 119.74224 * 180.23246 * 10 9 7 12 12 C 1.38629 * 120.24653 * 359.52057 * 11 10 9 13 13 S 1.76200 * 119.75192 * 180.23254 * 12 11 10 14 14 O 1.42098 * 106.40777 * 203.54731 * 13 12 11 15 15 O 1.42111 * 106.39751 * 336.46312 * 13 12 11 16 16 N 1.65596 * 107.21871 * 89.99881 * 13 12 11 17 17 C 1.46506 * 119.99862 * 65.00567 * 16 13 12 18 18 C 1.53000 * 109.47172 * 164.99749 * 17 16 13 19 19 C 1.53002 * 109.46964 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.46990 * 180.02562 * 19 18 17 21 21 H 1.09004 * 110.43552 * 305.69671 * 20 19 18 22 22 C 1.54811 * 110.49008 * 183.15755 * 20 19 18 23 23 C 1.55225 * 101.98710 * 220.51763 * 22 20 19 24 24 O 1.44379 * 103.56569 * 36.87493 * 23 22 20 25 25 C 1.43737 * 106.97866 * 320.01178 * 24 23 22 26 26 C 1.38642 * 120.50308 * 0.25595 * 12 11 10 27 27 C 1.37612 * 120.24660 * 359.97438 * 26 12 11 28 28 H 0.97002 * 120.00064 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13067 * 0.03791 * 10 9 7 30 30 H 1.07999 * 119.87648 * 179.80170 * 11 10 9 31 31 H 0.97003 * 120.00144 * 245.00313 * 16 13 12 32 32 H 1.08998 * 109.47025 * 284.99924 * 17 16 13 33 33 H 1.09004 * 109.46685 * 44.99862 * 17 16 13 34 34 H 1.08998 * 109.47288 * 300.00014 * 18 17 16 35 35 H 1.09002 * 109.46794 * 60.00142 * 18 17 16 36 36 H 1.09007 * 109.46962 * 299.99990 * 19 18 17 37 37 H 1.08995 * 109.47340 * 60.00028 * 19 18 17 38 38 H 1.09005 * 110.90241 * 338.63540 * 22 20 19 39 39 H 1.09001 * 110.91151 * 102.23918 * 22 20 19 40 40 H 1.08999 * 110.51601 * 278.38099 * 23 22 20 41 41 H 1.09005 * 110.77690 * 155.49786 * 23 22 20 42 42 H 1.08997 * 109.88333 * 267.08721 * 25 24 23 43 43 H 1.09001 * 110.00315 * 146.00312 * 25 24 23 44 44 H 1.08003 * 119.87153 * 179.97438 * 26 12 11 45 45 H 1.08001 * 120.12580 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6223 0.7961 6 1 3.5856 1.4139 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2346 -0.2868 9 6 1.3523 -2.4067 0.3771 10 6 0.2237 -2.3615 1.2163 11 6 -0.4037 -3.5310 1.5804 12 6 0.0663 -4.7496 1.1156 13 16 -0.7507 -6.2385 1.5849 14 8 0.2069 -7.2801 1.4543 15 8 -1.4316 -5.9566 2.8000 16 7 -1.9208 -6.5340 0.4510 17 6 -1.5417 -6.8289 -0.9330 18 6 -2.7415 -7.4210 -1.6753 19 6 -2.3457 -7.7284 -3.1209 20 6 -3.5456 -8.3199 -3.8634 21 1 -3.9373 -9.1839 -3.3264 22 6 -3.1492 -8.7135 -5.3072 23 6 -4.3933 -8.2610 -6.1178 24 8 -4.8013 -7.0423 -5.4598 25 6 -4.6446 -7.2554 -4.0470 26 6 1.1746 -4.8057 0.2845 27 6 1.8205 -3.6493 -0.0886 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1469 -1.4129 1.5758 30 1 -1.2682 -3.4991 2.2269 31 1 -2.8572 -6.5119 0.7032 32 1 -1.2262 -5.9100 -1.4270 33 1 -0.7204 -7.5456 -0.9399 34 1 -3.0570 -8.3400 -1.1813 35 1 -3.5627 -6.7043 -1.6684 36 1 -2.0305 -6.8091 -3.6147 37 1 -1.5243 -8.4448 -3.1283 38 1 -2.2589 -8.1722 -5.6273 39 1 -2.9990 -9.7899 -5.3897 40 1 -5.1815 -9.0116 -6.0586 41 1 -4.1278 -8.0660 -7.1569 42 1 -5.5817 -7.6124 -3.6198 43 1 -4.3459 -6.3267 -3.5608 44 1 1.5323 -5.7606 -0.0713 45 1 2.6835 -3.6952 -0.7364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401323850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:01 Heat of formation + Delta-G solvation = -150.420680 kcal Electronic energy + Delta-G solvation = -26725.925335 eV Core-core repulsion = 22832.952939 eV Total energy + Delta-G solvation = -3892.972396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.42587 -39.38021 -38.16776 -37.33507 -36.77174 -35.80407 -34.77972 -32.06472 -31.70389 -31.29466 -29.61517 -27.61874 -26.14669 -23.87069 -23.28506 -22.99130 -22.33249 -21.21008 -20.25850 -19.42488 -18.62051 -18.10822 -17.59485 -17.37271 -17.08849 -16.80139 -16.03109 -15.98359 -15.82741 -15.67087 -15.14899 -14.95504 -14.49914 -14.12562 -14.06485 -13.96645 -13.80950 -13.59996 -13.45024 -13.11684 -13.02082 -12.98894 -12.91644 -12.87387 -12.59368 -12.47069 -12.35735 -12.14979 -12.01354 -11.62170 -11.56839 -11.47407 -11.39895 -11.29320 -11.21665 -10.57562 -10.32495 -9.78506 -9.55062 -8.87747 -6.64959 -0.27640 0.48567 1.05660 1.35330 1.41617 1.52115 2.10926 2.27230 2.53309 2.95245 3.07980 3.52341 3.55847 3.63340 3.75680 3.97055 4.08708 4.22154 4.28228 4.30838 4.33113 4.33245 4.47754 4.54862 4.71948 4.78095 4.80269 4.86939 4.88669 4.93702 4.97230 4.98203 5.07412 5.09776 5.14392 5.23810 5.24188 5.38613 5.46129 5.52512 5.59532 5.76228 5.92975 5.98992 6.15363 6.22281 6.49054 6.68162 6.81009 8.07384 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009814 B = 0.002873 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.494420 B = 9744.981043 C =11725.937011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.091 0.909 9 C 0.111 3.889 10 C -0.210 4.210 11 C -0.021 4.021 12 C -0.798 4.798 13 S 2.727 3.273 14 O -1.000 7.000 15 O -1.007 7.007 16 N -1.111 6.111 17 C 0.111 3.889 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.116 4.116 21 H 0.099 0.901 22 C -0.149 4.149 23 C 0.038 3.962 24 O -0.411 6.411 25 C 0.041 3.959 26 C -0.001 4.001 27 C -0.257 4.257 28 H 0.298 0.702 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.423 0.577 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.128 0.872 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.712 -12.254 -9.398 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.493 4.493 8 H 0.109 0.891 9 C 0.107 3.893 10 C -0.230 4.230 11 C -0.041 4.041 12 C -0.890 4.890 13 S 2.822 3.178 14 O -0.990 6.990 15 O -0.997 6.997 16 N -0.872 5.872 17 C -0.015 4.015 18 C -0.159 4.159 19 C -0.147 4.147 20 C -0.135 4.135 21 H 0.118 0.882 22 C -0.187 4.187 23 C -0.038 4.038 24 O -0.331 6.331 25 C -0.035 4.035 26 C -0.021 4.021 27 C -0.277 4.277 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.259 0.741 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.146 0.854 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.655 -12.473 -8.827 17.090 hybrid contribution 0.074 1.474 -0.119 1.480 sum -7.580 -10.999 -8.946 16.077 Atomic orbital electron populations 1.69848 1.09341 1.31807 1.30859 1.27000 0.95582 1.05169 0.90745 0.85058 0.79191 0.75000 0.79813 1.18159 1.18787 1.17950 1.20220 0.98937 0.92125 1.38012 0.89050 1.18203 0.90591 0.93382 0.87090 1.21356 1.01174 0.97079 1.03377 1.20452 0.96849 0.91887 0.94916 1.29677 1.16908 1.16925 1.25514 1.00227 0.72411 0.73102 0.72030 1.93455 1.62572 1.56059 1.86920 1.93461 1.75067 1.86541 1.44653 1.55297 1.21688 1.87912 1.22334 1.21436 0.99464 1.00429 0.80152 1.21804 0.96789 1.02065 0.95268 1.21579 0.97789 1.01423 0.93937 1.22556 0.95501 0.98593 0.96862 0.88248 1.23265 0.98549 1.03114 0.93763 1.23783 0.95807 0.86374 0.97831 1.88851 1.88027 1.36990 1.19230 1.23438 0.98380 0.99758 0.81931 1.20467 0.91902 0.97805 0.91897 1.21288 1.05305 0.92831 1.08263 0.89075 0.87243 0.86837 0.74086 0.92441 0.90391 0.89638 0.90659 0.92093 0.90195 0.90726 0.88265 0.91149 0.88403 0.91645 0.90211 0.85447 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.43 10.97 21.82 0.24 -38.19 16 2 C 0.03 1.60 5.14 85.26 0.44 2.04 16 3 Si 0.99 34.68 29.60 68.60 2.03 36.71 16 4 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 5 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 6 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 7 C -0.47 -23.35 9.05 23.46 0.21 -23.13 16 8 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 9 C 0.11 5.76 5.57 -21.29 -0.12 5.64 16 10 C -0.21 -10.85 8.70 22.73 0.20 -10.65 16 11 C -0.02 -0.99 9.49 22.22 0.21 -0.78 16 12 C -0.80 -34.63 5.97 22.46 0.13 -34.50 16 13 S 2.73 100.10 5.73 -56.49 -0.32 99.78 16 14 O -1.00 -39.92 16.73 -128.00 -2.14 -42.06 16 15 O -1.01 -41.65 17.26 -128.00 -2.21 -43.85 16 16 N -1.11 -30.16 6.00 -187.48 -1.12 -31.29 16 17 C 0.11 2.65 6.22 86.38 0.54 3.19 16 18 C -0.12 -2.02 5.20 30.59 0.16 -1.86 16 19 C -0.11 -1.67 4.41 30.59 0.13 -1.54 16 20 C -0.12 -1.56 3.06 -9.80 -0.03 -1.59 16 21 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 22 C -0.15 -1.82 6.73 31.98 0.22 -1.61 16 23 C 0.04 0.54 7.72 72.75 0.56 1.10 16 24 O -0.41 -8.87 11.52 -148.98 -1.72 -10.58 16 25 C 0.04 0.71 6.94 72.35 0.50 1.21 16 26 C 0.00 -0.04 9.49 22.22 0.21 0.17 16 27 C -0.26 -12.18 9.80 22.73 0.22 -11.96 16 28 H 0.30 12.79 8.30 -92.71 -0.77 12.02 16 29 H 0.11 5.80 6.17 -2.91 -0.02 5.79 16 30 H 0.11 4.97 7.60 -2.91 -0.02 4.94 16 31 H 0.42 9.32 8.65 -96.74 -0.84 8.48 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.85 7.75 -2.39 -0.02 1.83 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.21 6.99 -2.39 -0.02 1.20 16 36 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.01 7.87 -2.38 -0.02 0.99 16 39 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 1.47 6.82 -2.39 -0.02 1.46 16 44 H 0.13 4.84 7.60 -2.91 -0.02 4.82 16 45 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -66.18 379.59 -1.50 -67.67 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: 0.16 Total: 36.10 kcal Atomic # 6 Polarization: -77.87 SS G_CDS: 3.59 Total: -74.28 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -0.89 Total: -69.48 kcal Atomic # 8 Polarization: -90.43 SS G_CDS: -6.07 Total: -96.50 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Atomic # 16 Polarization: 100.10 SS G_CDS: -0.32 Total: 99.78 kcal Total: -66.18 -1.50 -67.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401323850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.747 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds