Wall clock time and date at job start Tue Mar 31 2020 22:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48502 * 109.47257 * 264.17040 * 3 2 1 5 5 H 1.48499 * 109.46795 * 24.16970 * 3 2 1 6 6 H 1.48500 * 109.46941 * 144.16816 * 3 2 1 7 7 C 1.37878 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00378 * 10.84876 * 7 2 1 9 9 C 1.50704 * 119.99933 * 191.13218 * 7 2 1 10 10 C 1.53001 * 115.54610 * 275.80567 * 9 7 2 11 11 S 1.81402 * 109.46987 * 295.13810 * 10 9 7 12 12 O 1.42099 * 110.54227 * 298.45336 * 11 10 9 13 13 O 1.42090 * 110.54430 * 75.20660 * 11 10 9 14 14 N 1.65598 * 104.44747 * 186.83318 * 11 10 9 15 15 C 1.46507 * 120.00307 * 90.00037 * 14 11 10 16 16 C 1.52998 * 109.46893 * 94.99824 * 15 14 11 17 17 O 1.42903 * 109.47354 * 65.00295 * 16 15 14 18 18 C 1.46503 * 119.99837 * 269.99825 * 14 11 10 19 19 C 1.50707 * 109.47108 * 95.00313 * 18 14 11 20 20 C 1.38230 * 119.99722 * 269.72703 * 19 18 14 21 21 C 1.38232 * 119.99929 * 179.76246 * 20 19 18 22 22 C 1.38239 * 120.00028 * 0.51028 * 21 20 19 23 23 C 1.38243 * 119.99755 * 359.74585 * 22 21 20 24 24 C 1.38236 * 119.99741 * 89.99621 * 19 18 14 25 25 C 1.52996 * 117.50264 * 130.13410 * 9 7 2 26 26 C 1.53000 * 117.49806 * 61.47231 * 9 7 2 27 27 H 0.96998 * 119.99771 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47535 * 55.14312 * 10 9 7 29 29 H 1.09002 * 109.46869 * 175.14320 * 10 9 7 30 30 H 1.08995 * 109.47136 * 214.99689 * 15 14 11 31 31 H 1.09000 * 109.46764 * 335.00052 * 15 14 11 32 32 H 1.09005 * 109.47252 * 185.00016 * 16 15 14 33 33 H 1.09000 * 109.47320 * 305.00151 * 16 15 14 34 34 H 0.96695 * 113.99901 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.46937 * 215.00117 * 18 14 11 36 36 H 1.08994 * 109.47121 * 335.00305 * 18 14 11 37 37 H 1.08008 * 120.00215 * 359.97438 * 20 19 18 38 38 H 1.07997 * 120.00556 * 180.22893 * 21 20 19 39 39 H 1.07997 * 120.00514 * 179.72033 * 22 21 20 40 40 H 1.07997 * 119.99706 * 179.97438 * 23 22 21 41 41 H 1.07993 * 120.00166 * 0.02562 * 24 19 18 42 42 H 1.09010 * 117.49312 * 359.97438 * 25 9 7 43 43 H 1.08997 * 117.50562 * 145.01639 * 25 9 7 44 44 H 1.09006 * 117.49608 * 214.98176 * 26 9 7 45 45 H 1.08994 * 117.50032 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6199 1.9753 -1.3928 5 1 1.3904 2.6850 0.5733 6 1 3.4797 1.4788 0.8196 7 6 2.0045 -1.1941 0.0005 8 1 1.4790 -2.1211 -0.1751 9 6 3.4903 -1.2062 0.2525 10 6 4.3692 -0.9406 -0.9713 11 16 4.1609 -2.2870 -2.1690 12 8 4.5706 -3.5248 -1.6040 13 8 2.9164 -2.1659 -2.8439 14 7 5.2917 -1.9780 -3.3388 15 6 6.6402 -2.5383 -3.2203 16 6 6.7187 -3.8489 -4.0058 17 8 6.5415 -3.5811 -5.3983 18 6 4.9435 -1.1444 -4.4921 19 6 5.3557 0.2804 -4.2248 20 6 4.4695 1.1551 -3.6245 21 6 4.8492 2.4606 -3.3749 22 6 6.1114 2.8943 -3.7352 23 6 6.9957 2.0209 -4.3403 24 6 6.6179 0.7139 -4.5851 25 6 4.0205 -2.1823 1.3047 26 6 3.9821 -0.6814 1.6029 27 1 -0.4850 0.8400 -0.0004 28 1 4.0764 0.0032 -1.4310 29 1 5.4135 -0.8864 -0.6637 30 1 7.3645 -1.8299 -3.6223 31 1 6.8631 -2.7298 -2.1707 32 1 7.6930 -4.3107 -3.8457 33 1 5.9354 -4.5252 -3.6633 34 1 6.5799 -4.3685 -5.9582 35 1 5.4628 -1.5130 -5.3767 36 1 3.8672 -1.1861 -4.6588 37 1 3.4817 0.8177 -3.3474 38 1 4.1583 3.1431 -2.9025 39 1 6.4065 3.9155 -3.5443 40 1 7.9817 2.3598 -4.6222 41 1 7.3085 0.0317 -5.0584 42 1 3.2945 -2.8154 1.8149 43 1 4.9956 -2.6350 1.1253 44 1 4.9321 -0.1472 1.6195 45 1 3.2311 -0.3269 2.3089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451222133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:19 Heat of formation + Delta-G solvation = -89.081052 kcal Electronic energy + Delta-G solvation = -29356.641064 eV Core-core repulsion = 25466.328554 eV Total energy + Delta-G solvation = -3890.312510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.33553 -38.86853 -38.47156 -38.02898 -36.87829 -36.35845 -34.33687 -32.71083 -31.83960 -30.13441 -29.84093 -27.67249 -26.49880 -23.81178 -23.36258 -23.17104 -22.29176 -21.20704 -19.83338 -18.88382 -18.62673 -17.92649 -17.69932 -17.53311 -17.04042 -16.84694 -16.15289 -16.01724 -15.91849 -15.58839 -15.07769 -14.90745 -14.72516 -14.55455 -14.40790 -14.14279 -13.93107 -13.65929 -13.44453 -13.33871 -13.24935 -13.02157 -12.85309 -12.74791 -12.45006 -12.39946 -12.35047 -12.14775 -12.10291 -11.87984 -11.79911 -11.63836 -10.85854 -10.82752 -10.78907 -10.37638 -9.93183 -9.81324 -9.71922 -8.36926 -6.48054 -0.66917 0.38038 0.47785 1.30838 1.32559 1.45594 1.86679 2.32438 2.85804 2.89482 2.94305 3.13836 3.25202 3.46451 3.63231 3.85179 3.86585 4.01265 4.06060 4.15015 4.23874 4.30401 4.31095 4.37591 4.38171 4.52469 4.57500 4.61337 4.62955 4.76530 4.85249 4.90235 4.94536 4.98585 5.09227 5.11188 5.17589 5.19142 5.44682 5.56617 5.59054 5.60631 5.62859 5.74252 6.11320 6.15909 6.61763 6.96684 7.24148 8.78961 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.006469 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.708176 B = 4327.272113 C = 5934.183287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.033 3.967 3 Si 0.909 3.091 4 H -0.254 1.254 5 H -0.293 1.293 6 H -0.207 1.207 7 C -0.516 4.516 8 H 0.026 0.974 9 C -0.035 4.035 10 C -0.573 4.573 11 S 2.611 3.389 12 O -0.982 6.982 13 O -0.993 6.993 14 N -0.986 5.986 15 C 0.112 3.888 16 C 0.056 3.944 17 O -0.581 6.581 18 C 0.156 3.844 19 C -0.114 4.114 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.095 4.095 25 C -0.173 4.173 26 C -0.155 4.155 27 H 0.268 0.732 28 H 0.118 0.882 29 H 0.151 0.849 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.029 0.971 34 H 0.393 0.607 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.019 2.224 -9.701 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.167 4.167 3 Si 0.731 3.269 4 H -0.178 1.178 5 H -0.219 1.219 6 H -0.129 1.129 7 C -0.553 4.553 8 H 0.045 0.955 9 C -0.038 4.038 10 C -0.704 4.704 11 S 2.709 3.291 12 O -0.972 6.972 13 O -0.984 6.984 14 N -0.823 5.823 15 C -0.013 4.013 16 C -0.023 4.023 17 O -0.389 6.389 18 C 0.032 3.968 19 C -0.115 4.115 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.114 4.114 25 C -0.210 4.210 26 C -0.193 4.193 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.170 0.830 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.243 0.757 35 H 0.142 0.858 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.164 0.836 40 H 0.174 0.826 41 H 0.168 0.832 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 22.206 2.140 -9.520 24.255 hybrid contribution -1.032 0.500 0.197 1.163 sum 21.175 2.639 -9.323 23.286 Atomic orbital electron populations 1.70075 1.08691 1.28420 1.50348 1.25851 0.95144 1.03173 0.92503 0.86374 0.81449 0.78035 0.81050 1.17826 1.21944 1.12914 1.20413 0.90501 0.93590 1.50759 0.95539 1.18761 0.92114 1.05751 0.87137 1.30233 1.08559 1.18230 1.13414 1.04778 0.73049 0.76414 0.74878 1.93453 1.82753 1.41041 1.79974 1.93492 1.44172 1.87728 1.72959 1.57503 1.25730 1.63825 1.35193 1.21711 0.82778 0.95302 1.01468 1.22691 1.00879 0.96804 0.81928 1.86389 1.96324 1.38638 1.17563 1.20348 1.01290 0.85654 0.89552 1.20377 0.95553 0.95644 0.99968 1.21263 0.99310 0.95319 1.00196 1.21306 0.98030 0.95467 1.00628 1.21474 0.92831 1.01113 0.98006 1.21546 1.00600 0.93118 0.98040 1.21315 0.94520 0.96740 0.98793 1.23138 1.02186 0.92658 1.03054 1.23064 1.02094 0.96045 0.98141 0.92307 0.86390 0.83048 0.86928 0.87856 0.89498 0.95224 0.75747 0.85788 0.91126 0.89082 0.86734 0.83626 0.82569 0.83195 0.90210 0.86876 0.86931 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.47 13.96 21.45 0.30 -60.17 16 2 C 0.03 1.96 5.46 84.66 0.46 2.42 16 3 Si 0.91 42.58 25.45 68.60 1.75 44.32 16 4 H -0.25 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.21 -8.38 5.41 99.48 0.54 -7.84 16 7 C -0.52 -30.52 8.72 25.60 0.22 -30.29 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 9 C -0.04 -1.62 0.80 -52.93 -0.04 -1.66 16 10 C -0.57 -22.27 5.79 71.98 0.42 -21.85 16 11 S 2.61 107.09 5.09 -56.49 -0.29 106.80 16 12 O -0.98 -41.65 16.76 -127.65 -2.14 -43.79 16 13 O -0.99 -51.26 16.22 -127.65 -2.07 -53.33 16 14 N -0.99 -29.10 2.69 -519.83 -1.40 -30.50 16 15 C 0.11 2.34 5.70 86.38 0.49 2.83 16 16 C 0.06 1.09 7.39 71.98 0.53 1.62 16 17 O -0.58 -10.48 11.98 -148.98 -1.78 -12.26 16 18 C 0.16 4.46 5.62 85.63 0.48 4.94 16 19 C -0.11 -3.02 5.46 -19.86 -0.11 -3.13 16 20 C -0.14 -4.54 8.24 22.27 0.18 -4.35 16 21 C -0.14 -3.77 10.05 22.27 0.22 -3.55 16 22 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 23 C -0.12 -1.96 10.05 22.27 0.22 -1.73 16 24 C -0.10 -1.83 9.37 22.27 0.21 -1.63 16 25 C -0.17 -6.94 9.96 30.62 0.30 -6.64 16 26 C -0.15 -6.05 7.21 30.62 0.22 -5.83 16 27 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 28 H 0.12 4.73 4.25 -2.39 -0.01 4.72 16 29 H 0.15 4.36 8.09 -2.39 -0.02 4.34 16 30 H 0.11 1.70 7.60 -2.39 -0.02 1.68 16 31 H 0.10 1.94 7.61 -2.39 -0.02 1.92 16 32 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.03 0.73 7.91 -2.39 -0.02 0.72 16 34 H 0.39 3.89 9.12 -74.06 -0.68 3.22 16 35 H 0.12 2.94 6.55 -2.39 -0.02 2.93 16 36 H 0.07 2.43 6.76 -2.39 -0.02 2.42 16 37 H 0.09 3.53 7.64 -2.91 -0.02 3.51 16 38 H 0.11 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.15 2.05 7.89 -2.91 -0.02 2.03 16 42 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 43 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 44 H 0.11 3.53 8.14 -2.38 -0.02 3.52 16 45 H 0.08 3.28 8.00 -2.39 -0.02 3.26 16 Total: -1.00 -83.50 376.15 -1.43 -84.93 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.15 Total: 34.97 kcal Atomic # 6 Polarization: -75.02 SS G_CDS: 4.05 Total: -70.98 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -1.10 Total: -90.67 kcal Atomic # 8 Polarization: -103.38 SS G_CDS: -5.99 Total: -109.38 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.75 Total: 44.32 kcal Atomic # 16 Polarization: 107.09 SS G_CDS: -0.29 Total: 106.80 kcal Total: -83.50 -1.43 -84.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451222133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.152 kcal (2) G-P(sol) polarization free energy of solvation -83.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds