Wall clock time and date at job start Tue Mar 31 2020 22:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99945 * 2 1 4 4 H 1.48497 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47087 * 300.00102 * 3 2 1 6 6 H 1.48503 * 109.46948 * 59.99719 * 3 2 1 7 7 C 1.37879 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99882 * 172.23659 * 7 2 1 9 9 C 1.50700 * 120.00026 * 352.23228 * 7 2 1 10 10 C 1.52997 * 115.54884 * 84.78402 * 9 7 2 11 11 S 1.81403 * 109.47124 * 65.19552 * 10 9 7 12 12 O 1.42110 * 110.53991 * 62.18194 * 11 10 9 13 13 O 1.42098 * 110.54464 * 285.43540 * 11 10 9 14 14 N 1.65599 * 104.45003 * 173.80420 * 11 10 9 15 15 C 1.46495 * 119.99648 * 64.72875 * 14 11 10 16 16 C 1.52998 * 109.47455 * 165.27299 * 15 14 11 17 17 O 1.42902 * 109.47118 * 64.99672 * 16 15 14 18 18 C 1.42901 * 114.00429 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47413 * 180.02562 * 18 17 16 20 20 C 1.38245 * 119.99895 * 269.72679 * 19 18 17 21 21 C 1.38233 * 119.99782 * 179.76590 * 20 19 18 22 22 C 1.38233 * 120.00252 * 0.50796 * 21 20 19 23 23 C 1.38240 * 119.99716 * 359.73982 * 22 21 20 24 24 C 1.38227 * 120.00330 * 89.99664 * 19 18 17 25 25 C 1.53003 * 117.49710 * 230.45523 * 9 7 2 26 26 C 1.53002 * 117.49801 * 299.11434 * 9 7 2 27 27 H 0.97003 * 120.00122 * 5.02187 * 1 2 3 28 28 H 1.08997 * 109.47464 * 305.19284 * 10 9 7 29 29 H 1.09005 * 109.46774 * 185.19041 * 10 9 7 30 30 H 0.97002 * 120.00154 * 244.99975 * 14 11 10 31 31 H 1.09006 * 109.47414 * 285.27365 * 15 14 11 32 32 H 1.08995 * 109.47885 * 45.27127 * 15 14 11 33 33 H 1.08997 * 109.48054 * 184.99457 * 16 15 14 34 34 H 1.08999 * 109.47343 * 305.00299 * 16 15 14 35 35 H 1.09001 * 109.46532 * 300.00083 * 18 17 16 36 36 H 1.08997 * 109.46832 * 59.99532 * 18 17 16 37 37 H 1.07998 * 119.99264 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.99373 * 180.22946 * 21 20 19 39 39 H 1.07995 * 120.00306 * 179.72853 * 22 21 20 40 40 H 1.08000 * 119.99258 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.99901 * 0.02562 * 24 19 18 42 42 H 1.08997 * 117.49767 * 214.99745 * 25 9 7 43 43 H 1.08999 * 117.49842 * 0.02562 * 25 9 7 44 44 H 1.09001 * 117.49716 * 359.97438 * 26 9 7 45 45 H 1.09001 * 117.49794 * 144.97452 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0772 -1.1983 -0.1269 9 6 1.2614 -2.4933 0.1753 10 6 0.6670 -3.0914 -1.1013 11 16 2.0072 -3.5623 -2.2295 12 8 2.8269 -4.5624 -1.6401 13 8 2.5780 -2.4100 -2.8342 14 7 1.2439 -4.3418 -3.4753 15 6 0.3133 -3.6089 -4.3372 16 6 0.0350 -4.4273 -5.5996 17 8 -0.6467 -5.6323 -5.2454 18 6 -0.9552 -6.4742 -6.3581 19 6 -1.6696 -7.7085 -5.8713 20 6 -0.9461 -8.8339 -5.5232 21 6 -1.6011 -9.9645 -5.0720 22 6 -2.9803 -9.9734 -4.9789 23 6 -3.7041 -8.8498 -5.3318 24 6 -3.0487 -7.7174 -5.7781 25 6 1.7805 -3.4660 1.2361 26 6 0.4826 -2.6910 1.4773 27 1 -0.4850 0.8368 -0.0735 28 1 0.0275 -2.3530 -1.5850 29 1 0.0777 -3.9731 -0.8492 30 1 1.4100 -5.2846 -3.6319 31 1 -0.6206 -3.4384 -3.8016 32 1 0.7528 -2.6509 -4.6150 33 1 -0.5860 -3.8454 -6.2806 34 1 0.9778 -4.6736 -6.0882 35 1 -1.5965 -5.9347 -7.0551 36 1 -0.0328 -6.7628 -6.8621 37 1 0.1311 -8.8285 -5.6006 38 1 -1.0356 -10.8423 -4.7965 39 1 -3.4923 -10.8582 -4.6306 40 1 -4.7816 -8.8570 -5.2595 41 1 -3.6143 -6.8399 -6.0546 42 1 1.6984 -4.5321 1.0245 43 1 2.6592 -3.1661 1.8071 44 1 0.5081 -1.8816 2.2069 45 1 -0.4535 -3.2469 1.4244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451271664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:31 Heat of formation + Delta-G solvation = -71.912129 kcal Electronic energy + Delta-G solvation = -26932.823304 eV Core-core repulsion = 23043.255294 eV Total energy + Delta-G solvation = -3889.568010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.63144 -38.05982 -36.71373 -36.19909 -35.11503 -34.81266 -32.13628 -32.01934 -31.15455 -28.67831 -28.10814 -26.04650 -25.42694 -22.84203 -22.55914 -21.56885 -21.17642 -19.69572 -18.64181 -17.30070 -16.90205 -16.87448 -16.47297 -16.27955 -15.79048 -15.48251 -15.05867 -14.80355 -14.66983 -14.31928 -14.00044 -13.71377 -13.63001 -13.45060 -13.08814 -12.90166 -12.54903 -12.34305 -11.91360 -11.82064 -11.76367 -11.29041 -11.24290 -11.19126 -11.11926 -11.01106 -10.93223 -10.91916 -10.54344 -10.41911 -10.08515 -9.84776 -9.68305 -9.16781 -9.14771 -9.09731 -8.92026 -8.54941 -8.05179 -6.11970 -4.22155 1.00319 1.14665 1.15511 3.26333 3.29552 3.37302 3.44928 3.52945 3.84848 4.38933 4.53099 4.54215 4.59470 4.74949 4.84405 4.93058 4.95024 5.00434 5.09161 5.12858 5.19057 5.21815 5.27066 5.28991 5.39120 5.59063 5.70389 5.73243 5.77904 5.81231 6.02793 6.17218 6.18472 6.24932 6.31729 6.33048 6.41829 6.65666 6.72162 6.76033 6.96562 7.02250 7.27031 7.38107 7.42410 7.82668 8.23521 8.83633 9.48686 10.95708 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.002604 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.922716 B =10749.104267 C =11052.627667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.081 3.919 3 Si 0.892 3.108 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.069 0.931 9 C 0.043 3.957 10 C -0.554 4.554 11 S 2.608 3.392 12 O -0.975 6.975 13 O -0.953 6.953 14 N -1.129 6.129 15 C 0.120 3.880 16 C 0.055 3.945 17 O -0.377 6.377 18 C 0.102 3.898 19 C -0.090 4.090 20 C -0.098 4.098 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.098 4.098 25 C -0.208 4.208 26 C -0.142 4.142 27 H 0.262 0.738 28 H 0.133 0.867 29 H 0.100 0.900 30 H 0.412 0.588 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.393 -15.636 -13.981 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.124 4.124 3 Si 0.719 3.281 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.552 4.552 8 H 0.087 0.913 9 C 0.041 3.959 10 C -0.687 4.687 11 S 2.705 3.295 12 O -0.966 6.966 13 O -0.943 6.943 14 N -0.887 5.887 15 C -0.007 4.007 16 C -0.023 4.023 17 O -0.297 6.297 18 C 0.025 3.975 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.117 4.117 25 C -0.246 4.246 26 C -0.181 4.181 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.118 0.882 30 H 0.245 0.755 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.692 -15.202 -13.698 21.529 hybrid contribution -0.416 0.558 -0.185 0.720 sum -7.109 -14.644 -13.883 21.394 Atomic orbital electron populations 1.69994 1.06016 1.27023 1.47967 1.24961 0.94810 0.99214 0.93395 0.86514 0.80753 0.83187 0.77602 1.19242 1.20657 1.20888 1.20579 0.93739 0.88599 1.52248 0.91295 1.18286 0.98967 0.94311 0.84356 1.29967 1.16558 1.08503 1.13663 1.05080 0.76440 0.73678 0.74279 1.93503 1.65631 1.59411 1.78009 1.93525 1.75031 1.51040 1.74654 1.55872 1.61743 1.22756 1.48327 1.21285 0.93664 0.94908 0.90817 1.22757 0.96393 0.86063 0.97048 1.88015 1.77799 1.32094 1.31759 1.21302 0.98229 0.89156 0.88783 1.19620 0.93741 0.94468 1.01194 1.21106 0.99979 0.92801 0.97766 1.21168 0.94676 0.98380 0.99943 1.21211 0.94334 0.98404 0.99432 1.21161 1.00019 0.93392 0.99670 1.21080 0.93801 0.98161 0.98613 1.23196 0.98627 0.96084 1.06651 1.22552 0.92590 1.01027 1.01929 0.92819 0.84920 0.88191 0.75487 0.90943 0.88633 0.91838 0.92291 0.92403 0.92390 0.85832 0.85876 0.86048 0.85924 0.85906 0.90666 0.89554 0.89625 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.07 12.98 55.43 0.72 -23.35 16 2 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 3 Si 0.89 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.18 8.18 -34.44 -0.28 -14.46 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 C 0.04 1.06 1.32 -155.66 -0.21 0.86 16 10 C -0.55 -11.82 5.92 37.16 0.22 -11.60 16 11 S 2.61 53.36 5.19 -107.50 -0.56 52.80 16 12 O -0.98 -21.88 18.08 -57.54 -1.04 -22.92 16 13 O -0.95 -22.60 17.18 -57.54 -0.99 -23.59 16 14 N -1.13 -17.44 5.85 -10.62 -0.06 -17.50 16 15 C 0.12 1.59 6.51 -4.05 -0.03 1.56 16 16 C 0.06 0.57 6.13 37.16 0.23 0.80 16 17 O -0.38 -4.37 10.13 -35.23 -0.36 -4.72 16 18 C 0.10 0.92 6.06 36.00 0.22 1.14 16 19 C -0.09 -0.89 5.51 -104.63 -0.58 -1.46 16 20 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 21 C -0.12 -1.07 10.05 -39.59 -0.40 -1.46 16 22 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 24 C -0.10 -0.91 9.70 -39.59 -0.38 -1.30 16 25 C -0.21 -4.67 9.96 -26.69 -0.27 -4.94 16 26 C -0.14 -3.29 9.49 -26.69 -0.25 -3.54 16 27 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 28 H 0.13 2.90 8.14 -51.93 -0.42 2.48 16 29 H 0.10 1.85 8.09 -51.92 -0.42 1.43 16 30 H 0.41 5.73 8.47 -34.47 -0.29 5.44 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.27 7.71 -51.93 -0.40 0.87 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 44 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 45 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -34.03 396.30 -11.33 -45.36 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.99 Total: 7.91 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: -3.00 Total: -36.40 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.66 Total: -40.85 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -2.39 Total: -51.23 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 53.36 SS G_CDS: -0.56 Total: 52.80 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.03 -11.33 -45.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451271664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.553 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds