Wall clock time and date at job start Tue Mar 31 2020 22:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48504 * 109.47163 * 240.00189 * 3 2 1 5 5 H 1.48493 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47268 * 120.00272 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99446 * 197.83802 * 7 2 1 9 9 C 1.41391 * 120.00394 * 17.83971 * 7 2 1 10 10 C 1.40709 * 120.24881 * 204.37955 * 9 7 2 11 11 C 1.37613 * 119.74954 * 180.29949 * 10 9 7 12 12 C 1.38635 * 120.24483 * 359.46596 * 11 10 9 13 13 C 1.50707 * 119.74865 * 180.26071 * 12 11 10 14 14 S 1.81409 * 109.47007 * 270.25543 * 13 12 11 15 15 O 1.42101 * 110.54184 * 291.62462 * 14 13 12 16 16 O 1.42094 * 110.54396 * 68.37374 * 14 13 12 17 17 N 1.65599 * 104.44840 * 179.97438 * 14 13 12 18 18 C 1.46505 * 119.99881 * 64.99906 * 17 14 13 19 19 C 1.53000 * 109.46685 * 164.99772 * 18 17 14 20 20 H 1.08999 * 109.47372 * 304.99895 * 19 18 17 21 21 C 1.53006 * 109.46680 * 185.00029 * 19 18 17 22 22 O 1.42902 * 109.47124 * 175.00460 * 21 19 18 23 23 C 1.53002 * 109.47022 * 65.00393 * 19 18 17 24 24 C 1.53000 * 117.49662 * 248.74203 * 23 19 18 25 25 C 1.52996 * 117.49684 * 180.08138 * 23 19 18 26 26 C 1.38637 * 120.50279 * 0.51851 * 12 11 10 27 27 C 1.37615 * 120.24401 * 359.76213 * 26 12 11 28 28 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.12610 * 0.02845 * 10 9 7 30 30 H 1.07998 * 119.88111 * 179.72526 * 11 10 9 31 31 H 1.08994 * 109.47107 * 30.25375 * 13 12 11 32 32 H 1.09000 * 109.46920 * 150.25688 * 13 12 11 33 33 H 0.96990 * 120.00118 * 244.99729 * 17 14 13 34 34 H 1.09000 * 109.47308 * 285.00221 * 18 17 14 35 35 H 1.09002 * 109.46768 * 44.99669 * 18 17 14 36 36 H 1.09004 * 109.47015 * 295.00151 * 21 19 18 37 37 H 1.09004 * 109.47200 * 55.00261 * 21 19 18 38 38 H 0.96690 * 113.99932 * 180.02562 * 22 21 19 39 39 H 1.08999 * 115.55081 * 34.41304 * 23 19 18 40 40 H 1.08999 * 117.49830 * 359.97438 * 24 23 19 41 41 H 1.09001 * 117.49689 * 145.02263 * 24 23 19 42 42 H 1.09004 * 117.50225 * 214.97783 * 25 23 19 43 43 H 1.09000 * 117.49890 * 0.02562 * 25 23 19 44 44 H 1.08003 * 119.87328 * 179.74277 * 26 12 11 45 45 H 1.08004 * 120.12443 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0491 -1.2346 0.2860 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0824 11 6 1.1833 -4.8069 -0.2946 12 6 0.0664 -4.7502 -1.1140 13 6 -0.6322 -6.0239 -1.5152 14 16 0.0981 -6.6563 -3.0507 15 8 -0.2070 -5.7955 -4.1394 16 8 1.4265 -7.1063 -2.8227 17 7 -0.7517 -8.0405 -3.3730 18 6 -2.1811 -7.9664 -3.6857 19 6 -2.6382 -9.2916 -4.2988 20 1 -2.0159 -9.5263 -5.1624 21 6 -4.0985 -9.1726 -4.7397 22 8 -4.4908 -10.3685 -5.4164 23 6 -2.5087 -10.4063 -3.2587 24 6 -1.4381 -11.4732 -3.4963 25 6 -2.9178 -11.8184 -3.6821 26 6 -0.4095 -3.5311 -1.5715 27 6 0.2208 -2.3619 -1.2119 28 1 -0.4850 0.8400 0.0004 29 1 2.6932 -3.6961 0.7243 30 1 1.5478 -5.7624 0.0526 31 1 -0.5165 -6.7660 -0.7254 32 1 -1.6918 -5.8229 -1.6727 33 1 -0.3032 -8.9003 -3.3547 34 1 -2.7436 -7.7756 -2.7718 35 1 -2.3562 -7.1580 -4.3956 36 1 -4.7315 -9.0261 -3.8644 37 1 -4.2067 -8.3221 -5.4128 38 1 -5.4071 -10.3633 -5.7251 39 1 -2.7067 -10.1127 -2.2279 40 1 -0.8264 -11.3812 -4.3937 41 1 -0.9320 -11.8818 -2.6216 42 1 -3.3846 -12.4541 -2.9296 43 1 -3.2788 -11.9535 -4.7017 44 1 -1.2779 -3.4991 -2.2129 45 1 -0.1514 -1.4132 -1.5698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580891115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:30 Heat of formation + Delta-G solvation = -117.327155 kcal Electronic energy + Delta-G solvation = -26806.828913 eV Core-core repulsion = 22915.291560 eV Total energy + Delta-G solvation = -3891.537353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.71328 -39.57715 -38.08270 -36.94291 -36.86589 -35.96515 -35.94570 -33.20257 -31.76015 -31.27311 -29.52497 -25.99631 -25.87584 -23.95183 -23.09968 -23.00941 -22.14717 -20.92983 -20.25003 -19.29488 -18.64103 -18.32006 -17.48297 -17.26080 -17.05364 -16.50248 -16.29201 -16.04164 -15.66946 -15.65770 -15.34209 -14.72349 -14.64236 -14.37340 -14.05017 -13.90166 -13.65560 -13.50746 -13.44432 -13.23725 -13.10910 -13.02224 -12.77429 -12.60755 -12.58104 -12.46223 -12.32821 -12.21935 -11.96205 -11.83475 -11.59250 -11.34187 -11.03899 -11.00804 -10.75642 -10.61755 -10.41293 -9.46722 -9.26965 -8.71450 -6.40591 -0.71758 0.89110 1.07168 1.37640 1.48522 1.52792 1.90204 2.17952 2.63406 2.89936 2.96862 3.24438 3.42953 3.65424 3.65750 3.78688 3.98764 4.08073 4.14175 4.27141 4.36498 4.42234 4.44781 4.51847 4.55583 4.61462 4.69555 4.75813 4.81604 4.92284 4.99414 5.01654 5.08612 5.17333 5.21621 5.26116 5.34960 5.39861 5.53319 5.61512 5.84265 6.02398 6.04400 6.12032 6.28671 6.60769 6.85048 6.93202 7.00369 8.24805 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.002278 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.671947 B =12289.744332 C =12753.481070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.080 0.920 9 C 0.084 3.916 10 C -0.247 4.247 11 C -0.078 4.078 12 C -0.232 4.232 13 C -0.522 4.522 14 S 2.602 3.398 15 O -0.999 6.999 16 O -0.999 6.999 17 N -1.111 6.111 18 C 0.113 3.887 19 C -0.063 4.063 20 H 0.071 0.929 21 C 0.084 3.916 22 O -0.583 6.583 23 C -0.150 4.150 24 C -0.196 4.196 25 C -0.163 4.163 26 C -0.090 4.090 27 C -0.195 4.195 28 H 0.292 0.708 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.421 0.579 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.394 0.606 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.117 0.883 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.635 -17.573 -5.715 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.520 4.520 8 H 0.099 0.901 9 C 0.081 3.919 10 C -0.266 4.266 11 C -0.097 4.097 12 C -0.236 4.236 13 C -0.653 4.653 14 S 2.701 3.299 15 O -0.988 6.988 16 O -0.990 6.990 17 N -0.871 5.871 18 C -0.013 4.013 19 C -0.083 4.083 20 H 0.089 0.911 21 C 0.006 3.994 22 O -0.391 6.391 23 C -0.168 4.168 24 C -0.233 4.233 25 C -0.200 4.200 26 C -0.110 4.110 27 C -0.215 4.215 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.143 0.857 31 H 0.175 0.825 32 H 0.173 0.827 33 H 0.257 0.743 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.244 0.756 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.135 0.865 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.653 -17.132 -6.166 21.095 hybrid contribution -0.286 0.626 0.455 0.825 sum -10.939 -16.506 -5.711 20.609 Atomic orbital electron populations 1.69849 1.09041 1.31067 1.33951 1.26837 0.95584 1.04708 0.91061 0.85208 0.78831 0.75323 0.80140 1.18638 1.18869 1.18121 1.19937 0.98584 0.92439 1.41026 0.90145 1.18087 0.91721 0.93279 0.88801 1.21233 1.04723 0.92974 1.07713 1.20887 0.94749 0.97713 0.96387 1.18545 1.01854 0.92225 1.11004 1.28990 1.11751 1.04967 1.19612 1.05310 0.73853 0.73332 0.77379 1.93494 1.85261 1.67927 1.52151 1.93495 1.37352 1.80622 1.87507 1.55352 1.19966 1.24363 1.87462 1.21469 0.79733 0.98316 1.01766 1.20900 0.96816 0.93175 0.97394 0.91056 1.22047 0.93839 0.87083 0.96432 1.86432 1.35484 1.39270 1.77932 1.22280 1.04791 0.90114 0.99626 1.23133 0.92603 1.04263 1.03323 1.22990 0.96414 0.97176 1.03390 1.20943 0.98926 0.92422 0.98691 1.21345 1.00391 0.97348 1.02375 0.89707 0.87769 0.85731 0.82537 0.82732 0.74320 0.88590 0.90293 0.91623 0.92630 0.75615 0.86802 0.89496 0.88333 0.88830 0.87893 0.86511 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.78 10.95 21.83 0.24 -41.54 16 2 C 0.03 1.72 5.14 85.26 0.44 2.16 16 3 Si 0.98 37.65 29.59 68.60 2.03 39.68 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 6 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 7 C -0.49 -26.47 9.05 23.46 0.21 -26.25 16 8 H 0.08 4.16 7.91 -2.91 -0.02 4.13 16 9 C 0.08 4.60 5.57 -21.29 -0.12 4.48 16 10 C -0.25 -12.30 9.80 22.73 0.22 -12.07 16 11 C -0.08 -3.43 9.67 22.22 0.21 -3.22 16 12 C -0.23 -9.60 5.16 -19.67 -0.10 -9.70 16 13 C -0.52 -14.77 6.19 71.24 0.44 -14.33 16 14 S 2.60 80.77 5.44 -56.49 -0.31 80.46 16 15 O -1.00 -38.33 17.50 -127.65 -2.23 -40.56 16 16 O -1.00 -38.23 18.08 -127.65 -2.31 -40.54 16 17 N -1.11 -23.19 5.77 -187.48 -1.08 -24.27 16 18 C 0.11 1.81 5.51 86.38 0.48 2.29 16 19 C -0.06 -0.92 2.42 -10.79 -0.03 -0.95 16 20 H 0.07 1.27 7.90 -2.39 -0.02 1.26 16 21 C 0.08 0.95 6.41 71.98 0.46 1.41 16 22 O -0.58 -6.83 10.83 -148.98 -1.61 -8.45 16 23 C -0.15 -2.10 4.53 -10.79 -0.05 -2.15 16 24 C -0.20 -2.94 9.89 30.62 0.30 -2.64 16 25 C -0.16 -2.35 9.41 30.62 0.29 -2.07 16 26 C -0.09 -4.17 9.67 22.22 0.21 -3.95 16 27 C -0.19 -10.36 8.70 22.73 0.20 -10.16 16 28 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 29 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 30 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 31 H 0.16 3.42 8.08 -2.39 -0.02 3.40 16 32 H 0.15 3.35 8.08 -2.39 -0.02 3.33 16 33 H 0.42 7.92 7.86 -96.76 -0.76 7.16 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.37 7.70 -2.39 -0.02 1.35 16 36 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.39 1.37 9.12 -74.06 -0.68 0.70 16 39 H 0.11 1.40 8.11 -2.39 -0.02 1.38 16 40 H 0.09 1.39 8.05 -2.39 -0.02 1.37 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.10 1.69 6.21 -2.39 -0.01 1.67 16 44 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 45 H 0.11 5.88 6.16 -2.91 -0.02 5.86 16 Total: -1.00 -73.58 384.97 -2.52 -76.10 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.42 Total: 36.25 kcal Atomic # 6 Polarization: -80.32 SS G_CDS: 3.17 Total: -77.15 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.84 Total: -65.81 kcal Atomic # 8 Polarization: -83.39 SS G_CDS: -6.16 Total: -89.54 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Atomic # 16 Polarization: 80.77 SS G_CDS: -0.31 Total: 80.46 kcal Total: -73.58 -2.52 -76.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580891115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.223 kcal (2) G-P(sol) polarization free energy of solvation -73.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds