Wall clock time and date at job start Tue Mar 31 2020 22:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38294 * 120.11658 * 2 1 4 4 C 1.37925 * 120.35027 * 180.24136 * 3 2 1 5 5 C 1.39284 * 120.24479 * 359.97438 * 4 3 2 6 6 C 1.38881 * 118.87453 * 359.58428 * 5 4 3 7 7 C 1.37744 * 120.78469 * 0.62637 * 6 5 4 8 8 C 1.51937 * 107.10579 * 181.21272 * 6 5 4 9 9 H 1.08994 * 111.11185 * 133.28076 * 8 6 5 10 10 N 1.46506 * 110.89998 * 257.05649 * 8 6 5 11 11 S 1.65599 * 120.00178 * 208.81069 * 10 8 6 12 12 O 1.42097 * 104.27772 * 181.06718 * 11 10 8 13 13 O 1.42105 * 104.27423 * 308.92376 * 11 10 8 14 14 C 1.81395 * 104.45147 * 64.99575 * 11 10 8 15 15 C 1.52999 * 109.47304 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.46790 * 299.99944 * 15 14 11 17 17 C 1.52995 * 109.47219 * 59.99960 * 15 14 11 18 18 C 1.50700 * 109.47342 * 179.97438 * 15 14 11 19 19 H 1.08001 * 119.99643 * 357.69592 * 18 15 14 20 20 C 1.37873 * 120.00262 * 177.68975 * 18 15 14 21 21 N 1.31516 * 119.99734 * 6.58918 * 20 18 15 22 22 Si 1.86799 * 120.00311 * 186.58304 * 20 18 15 23 23 H 1.48498 * 109.47171 * 84.99610 * 22 20 18 24 24 H 1.48501 * 109.47245 * 204.99956 * 22 20 18 25 25 H 1.48499 * 109.46948 * 324.99579 * 22 20 18 26 26 C 1.54706 * 101.79271 * 15.11918 * 8 6 5 27 27 O 1.36138 * 129.89567 * 179.51262 * 5 4 3 28 28 H 1.09005 * 109.46666 * 90.00764 * 1 2 3 29 29 H 1.09004 * 109.46868 * 209.99852 * 1 2 3 30 30 H 1.08995 * 109.47208 * 330.00436 * 1 2 3 31 31 H 1.07996 * 119.81817 * 0.21461 * 3 2 1 32 32 H 1.08007 * 119.87894 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.00919 * 179.56529 * 7 6 5 34 34 H 0.97007 * 119.99852 * 28.80538 * 10 8 6 35 35 H 1.09007 * 109.47117 * 300.00243 * 14 11 10 36 36 H 1.09002 * 109.47323 * 60.00037 * 14 11 10 37 37 H 1.09001 * 109.47294 * 66.66791 * 16 15 14 38 38 H 1.09002 * 109.46721 * 186.66868 * 16 15 14 39 39 H 1.08998 * 109.46977 * 306.66842 * 16 15 14 40 40 H 1.09001 * 109.47528 * 60.00153 * 17 15 14 41 41 H 1.09001 * 109.47301 * 180.02562 * 17 15 14 42 42 H 1.09002 * 109.47328 * 300.00008 * 17 15 14 43 43 H 0.97003 * 120.00058 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.75350 * 216.51969 * 26 8 6 45 45 H 1.09005 * 110.75105 * 93.34934 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2008 1.1962 0.0000 4 6 3.5801 1.2019 -0.0050 5 6 4.2865 0.0015 -0.0096 6 6 3.5786 -1.1933 -0.0002 7 6 2.2012 -1.1967 0.0005 8 6 4.6002 -2.3178 0.0227 9 1 4.3420 -3.0676 0.7705 10 7 4.7357 -2.9278 -1.3024 11 16 5.1724 -4.5192 -1.4406 12 8 5.2270 -4.7471 -2.8421 13 8 6.3365 -4.6345 -0.6337 14 6 3.7917 -5.4335 -0.7004 15 6 4.0795 -6.9346 -0.7677 16 6 4.2458 -7.3569 -2.2288 17 6 5.3656 -7.2423 0.0017 18 6 2.9327 -7.6942 -0.1521 19 1 2.1007 -7.1585 0.2806 20 6 2.9455 -9.0728 -0.1415 21 7 4.0131 -9.7236 -0.5495 22 14 1.4468 -10.0163 0.4526 23 1 0.4859 -10.1757 -0.6683 24 1 1.8657 -11.3552 0.9397 25 1 0.7973 -9.2681 1.5588 26 6 5.8916 -1.5637 0.4188 27 8 5.6295 -0.2212 -0.0237 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6598 2.1309 0.0035 32 1 4.1143 2.1406 -0.0054 33 1 1.6634 -2.1332 0.0008 34 1 4.5696 -2.3995 -2.0988 35 1 3.6734 -5.1329 0.3408 36 1 2.8752 -5.2140 -1.2482 37 1 5.1453 -6.8983 -2.6395 38 1 4.3327 -8.4420 -2.2857 39 1 3.3778 -7.0313 -2.8021 40 1 5.2472 -6.9415 1.0426 41 1 5.5710 -8.3117 -0.0467 42 1 6.1954 -6.6930 -0.4432 43 1 4.0220 -10.6936 -0.5423 44 1 6.7559 -1.9793 -0.0993 45 1 6.0399 -1.5925 1.4984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581984770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:33 Heat of formation + Delta-G solvation = -80.332059 kcal Electronic energy + Delta-G solvation = -28248.649589 eV Core-core repulsion = 24358.716464 eV Total energy + Delta-G solvation = -3889.933125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37123 -38.00442 -36.62784 -36.33545 -35.43739 -35.13180 -32.14011 -31.72921 -31.13240 -28.59317 -26.79738 -26.70696 -25.77066 -25.27426 -23.49144 -22.05670 -21.23359 -19.74596 -18.87153 -17.77512 -17.51859 -16.62095 -16.56917 -16.00372 -15.56091 -15.32685 -15.20184 -14.78222 -14.57806 -14.10233 -13.92512 -13.82488 -13.33336 -13.14541 -13.01601 -12.68061 -12.56804 -12.36529 -12.25124 -12.10476 -12.07555 -11.66449 -11.52182 -11.25659 -11.10285 -11.03045 -11.00688 -10.91008 -10.76005 -10.43699 -10.35964 -10.15716 -9.79281 -9.70781 -9.40076 -9.17763 -8.76823 -8.42191 -8.24070 -6.08315 -4.20075 0.69417 1.06361 1.15459 3.03289 3.10388 3.23251 3.30564 3.31566 3.53274 4.03608 4.24400 4.32349 4.36529 4.59762 4.66709 4.69159 4.83732 5.02244 5.09560 5.11560 5.16899 5.24885 5.40929 5.44898 5.50828 5.56834 5.63109 5.72593 5.79910 5.90186 6.04063 6.18967 6.30499 6.33967 6.42088 6.63033 6.73146 6.85366 6.94376 6.99166 7.01704 7.25940 7.43440 7.63315 7.92917 8.04860 8.28577 8.78144 9.45369 10.92839 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.003583 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.231882 B = 7812.103693 C = 9143.305077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.078 4.078 4 C -0.141 4.141 5 C 0.113 3.887 6 C -0.183 4.183 7 C -0.052 4.052 8 C 0.168 3.832 9 H 0.114 0.886 10 N -1.116 6.116 11 S 2.589 3.411 12 O -0.960 6.960 13 O -0.961 6.961 14 C -0.582 4.582 15 C 0.082 3.918 16 C -0.161 4.161 17 C -0.164 4.164 18 C -0.503 4.503 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.882 5.882 22 Si 0.895 3.105 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.035 3.965 27 O -0.301 6.301 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.415 0.585 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.026 0.974 38 H 0.094 0.906 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.098 0.902 42 H 0.027 0.973 43 H 0.263 0.737 44 H 0.121 0.879 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 19.625 2.356 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.121 4.121 3 C -0.096 4.096 4 C -0.160 4.160 5 C 0.067 3.933 6 C -0.185 4.185 7 C -0.071 4.071 8 C 0.060 3.940 9 H 0.132 0.868 10 N -0.871 5.871 11 S 2.688 3.312 12 O -0.951 6.951 13 O -0.951 6.951 14 C -0.715 4.715 15 C 0.080 3.920 16 C -0.219 4.219 17 C -0.222 4.222 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.723 3.277 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.041 4.041 27 O -0.214 6.214 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.248 0.752 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.045 0.955 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.116 0.884 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.139 0.861 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.354 19.164 2.034 19.415 hybrid contribution -1.553 -0.457 0.323 1.651 sum -3.907 18.707 2.357 19.255 Atomic orbital electron populations 1.20715 0.90641 1.02831 1.02385 1.19798 0.96311 0.92576 1.03453 1.20781 0.92716 0.97915 0.98197 1.20227 0.93464 0.95555 1.06727 1.19616 0.83544 0.94353 0.95755 1.20813 0.94594 0.94081 1.09013 1.20309 0.91674 0.98373 0.96719 1.20772 0.92410 0.95053 0.85748 0.86829 1.56050 1.88305 1.30676 1.12061 1.05821 0.77692 0.72502 0.75231 1.93571 1.87420 1.83499 1.30561 1.93548 1.45533 1.84766 1.71288 1.30549 1.16876 1.12492 1.11606 1.17937 0.96100 0.83753 0.94203 1.22214 0.98128 1.05809 0.95742 1.22314 0.95519 1.05633 0.98721 1.20913 1.04045 0.90871 1.38436 0.92292 1.24934 0.96021 0.97616 0.95107 1.69809 1.27050 1.07989 1.47105 0.86562 0.82959 0.79211 0.78976 1.20523 1.21167 1.20007 1.24473 0.99287 0.79153 1.01229 1.86859 1.19573 1.33083 1.81916 0.91225 0.91385 0.91613 0.85194 0.85383 0.85266 0.75153 0.86548 0.86123 0.95541 0.88691 0.94561 0.94494 0.88369 0.95418 0.92664 0.86072 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.02 36.00 0.36 -0.41 16 2 C -0.12 -1.13 5.89 -104.56 -0.62 -1.74 16 3 C -0.08 -0.68 9.68 -39.68 -0.38 -1.06 16 4 C -0.14 -1.42 10.06 -39.31 -0.40 -1.81 16 5 C 0.11 1.36 7.04 -38.95 -0.27 1.09 16 6 C -0.18 -2.15 5.85 -103.95 -0.61 -2.76 16 7 C -0.05 -0.56 9.70 -39.72 -0.39 -0.94 16 8 C 0.17 2.08 3.56 -67.57 -0.24 1.84 16 9 H 0.11 1.25 7.27 -51.93 -0.38 0.88 16 10 N -1.12 -15.30 5.49 -4.58 -0.03 -15.33 16 11 S 2.59 46.13 4.45 -107.50 -0.48 45.66 16 12 O -0.96 -19.84 15.84 -57.54 -0.91 -20.75 16 13 O -0.96 -18.95 15.43 -57.54 -0.89 -19.84 16 14 C -0.58 -10.82 4.91 37.16 0.18 -10.64 16 15 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 16 C -0.16 -3.90 7.58 37.16 0.28 -3.62 16 17 C -0.16 -3.93 7.79 37.15 0.29 -3.64 16 18 C -0.50 -12.87 8.01 -34.44 -0.28 -13.14 16 19 H 0.06 1.46 7.75 -52.49 -0.41 1.06 16 20 C 0.07 1.70 5.09 -17.82 -0.09 1.61 16 21 N -0.88 -23.66 9.39 55.43 0.52 -23.14 16 22 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.04 0.42 7.72 38.06 0.29 0.71 16 27 O -0.30 -3.87 11.11 -20.18 -0.22 -4.09 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 32 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.42 5.23 8.78 -34.47 -0.30 4.93 16 35 H 0.12 1.91 7.47 -51.92 -0.39 1.52 16 36 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 37 H 0.03 0.61 5.96 -51.93 -0.31 0.30 16 38 H 0.09 2.48 5.99 -51.93 -0.31 2.17 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 2.56 6.01 -51.93 -0.31 2.25 16 42 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 43 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.12 1.49 8.10 -51.93 -0.42 1.07 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -31.49 368.15 -9.89 -41.38 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.47 Total: 8.00 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: -1.94 Total: -32.65 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.50 Total: -38.47 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -2.02 Total: -44.68 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 46.13 SS G_CDS: -0.48 Total: 45.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.49 -9.89 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581984770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.955 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds