Wall clock time and date at job start Tue Mar 31 2020 22:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38294 * 120.11658 * 2 1 4 4 C 1.37925 * 120.35027 * 180.24136 * 3 2 1 5 5 C 1.39284 * 120.24479 * 359.97438 * 4 3 2 6 6 C 1.38881 * 118.87453 * 359.58428 * 5 4 3 7 7 C 1.37744 * 120.78469 * 0.62637 * 6 5 4 8 8 C 1.51937 * 107.10579 * 181.21272 * 6 5 4 9 9 H 1.08994 * 111.11185 * 133.28076 * 8 6 5 10 10 N 1.46506 * 110.89998 * 257.05649 * 8 6 5 11 11 S 1.65599 * 120.00178 * 208.81069 * 10 8 6 12 12 O 1.42097 * 104.27772 * 181.06718 * 11 10 8 13 13 O 1.42105 * 104.27423 * 308.92376 * 11 10 8 14 14 C 1.81395 * 104.45147 * 64.99575 * 11 10 8 15 15 C 1.52999 * 109.47304 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.46790 * 299.99944 * 15 14 11 17 17 C 1.52995 * 109.47219 * 59.99960 * 15 14 11 18 18 C 1.50700 * 109.47342 * 179.97438 * 15 14 11 19 19 H 1.08001 * 119.99643 * 357.69592 * 18 15 14 20 20 C 1.37873 * 120.00262 * 177.68975 * 18 15 14 21 21 N 1.31516 * 119.99734 * 6.58918 * 20 18 15 22 22 Si 1.86799 * 120.00311 * 186.58304 * 20 18 15 23 23 H 1.48498 * 109.47171 * 84.99610 * 22 20 18 24 24 H 1.48501 * 109.47245 * 204.99956 * 22 20 18 25 25 H 1.48499 * 109.46948 * 324.99579 * 22 20 18 26 26 C 1.54706 * 101.79271 * 15.11918 * 8 6 5 27 27 O 1.36138 * 129.89567 * 179.51262 * 5 4 3 28 28 H 1.09005 * 109.46666 * 90.00764 * 1 2 3 29 29 H 1.09004 * 109.46868 * 209.99852 * 1 2 3 30 30 H 1.08995 * 109.47208 * 330.00436 * 1 2 3 31 31 H 1.07996 * 119.81817 * 0.21461 * 3 2 1 32 32 H 1.08007 * 119.87894 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.00919 * 179.56529 * 7 6 5 34 34 H 0.97007 * 119.99852 * 28.80538 * 10 8 6 35 35 H 1.09007 * 109.47117 * 300.00243 * 14 11 10 36 36 H 1.09002 * 109.47323 * 60.00037 * 14 11 10 37 37 H 1.09001 * 109.47294 * 66.66791 * 16 15 14 38 38 H 1.09002 * 109.46721 * 186.66868 * 16 15 14 39 39 H 1.08998 * 109.46977 * 306.66842 * 16 15 14 40 40 H 1.09001 * 109.47528 * 60.00153 * 17 15 14 41 41 H 1.09001 * 109.47301 * 180.02562 * 17 15 14 42 42 H 1.09002 * 109.47328 * 300.00008 * 17 15 14 43 43 H 0.97003 * 120.00058 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.75350 * 216.51969 * 26 8 6 45 45 H 1.09005 * 110.75105 * 93.34934 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2008 1.1962 0.0000 4 6 3.5801 1.2019 -0.0050 5 6 4.2865 0.0015 -0.0096 6 6 3.5786 -1.1933 -0.0002 7 6 2.2012 -1.1967 0.0005 8 6 4.6002 -2.3178 0.0227 9 1 4.3420 -3.0676 0.7705 10 7 4.7357 -2.9278 -1.3024 11 16 5.1724 -4.5192 -1.4406 12 8 5.2270 -4.7471 -2.8421 13 8 6.3365 -4.6345 -0.6337 14 6 3.7917 -5.4335 -0.7004 15 6 4.0795 -6.9346 -0.7677 16 6 4.2458 -7.3569 -2.2288 17 6 5.3656 -7.2423 0.0017 18 6 2.9327 -7.6942 -0.1521 19 1 2.1007 -7.1585 0.2806 20 6 2.9455 -9.0728 -0.1415 21 7 4.0131 -9.7236 -0.5495 22 14 1.4468 -10.0163 0.4526 23 1 0.4859 -10.1757 -0.6683 24 1 1.8657 -11.3552 0.9397 25 1 0.7973 -9.2681 1.5588 26 6 5.8916 -1.5637 0.4188 27 8 5.6295 -0.2212 -0.0237 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6598 2.1309 0.0035 32 1 4.1143 2.1406 -0.0054 33 1 1.6634 -2.1332 0.0008 34 1 4.5696 -2.3995 -2.0988 35 1 3.6734 -5.1329 0.3408 36 1 2.8752 -5.2140 -1.2482 37 1 5.1453 -6.8983 -2.6395 38 1 4.3327 -8.4420 -2.2857 39 1 3.3778 -7.0313 -2.8021 40 1 5.2472 -6.9415 1.0426 41 1 5.5710 -8.3117 -0.0467 42 1 6.1954 -6.6930 -0.4432 43 1 4.0220 -10.6936 -0.5423 44 1 6.7559 -1.9793 -0.0993 45 1 6.0399 -1.5925 1.4984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581984770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:32 Heat of formation + Delta-G solvation = -100.567150 kcal Electronic energy + Delta-G solvation = -28249.527048 eV Core-core repulsion = 24358.716464 eV Total energy + Delta-G solvation = -3890.810585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.21715 -38.76954 -38.14680 -38.13834 -36.94881 -36.21249 -33.64438 -32.82480 -32.00040 -29.51272 -28.35076 -27.69530 -27.45607 -27.24285 -24.31185 -22.91375 -22.02375 -21.43549 -20.32616 -18.94252 -18.64831 -17.91010 -17.52321 -17.45132 -16.91397 -16.75918 -16.58119 -15.98097 -15.73124 -15.01567 -14.91164 -14.71642 -14.60584 -14.50366 -14.43103 -14.05522 -13.81129 -13.68373 -13.34408 -13.09609 -13.02579 -13.01367 -12.87485 -12.82836 -12.78215 -12.54588 -12.46043 -12.22439 -12.14704 -11.99690 -11.80374 -11.73291 -11.57073 -11.40025 -10.80109 -10.47727 -10.38257 -9.95338 -9.02479 -8.03302 -6.21181 -0.70371 0.25183 0.38830 1.45119 1.47215 1.54650 1.80125 2.26464 2.44629 2.72658 2.78886 3.18839 3.21893 3.26190 3.48688 3.75169 3.93684 4.02502 4.07961 4.12193 4.21596 4.39048 4.44214 4.49892 4.58622 4.65054 4.76874 4.79413 4.84997 4.88501 4.92666 4.98568 5.08230 5.12105 5.18284 5.35165 5.38499 5.40683 5.49285 5.64411 5.65132 5.69934 5.90295 5.97163 6.11920 6.19190 6.34567 6.83448 7.47040 8.96438 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.003583 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.231882 B = 7812.103693 C = 9143.305077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.122 4.122 3 C -0.074 4.074 4 C -0.145 4.145 5 C 0.089 3.911 6 C -0.191 4.191 7 C -0.066 4.066 8 C 0.159 3.841 9 H 0.127 0.873 10 N -1.102 6.102 11 S 2.611 3.389 12 O -0.991 6.991 13 O -0.982 6.982 14 C -0.584 4.584 15 C 0.070 3.930 16 C -0.158 4.158 17 C -0.160 4.160 18 C -0.516 4.516 19 H 0.065 0.935 20 C 0.019 3.981 21 N -0.907 5.907 22 Si 0.952 3.048 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.266 1.266 26 C 0.031 3.969 27 O -0.315 6.315 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.421 0.579 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.032 0.968 43 H 0.261 0.739 44 H 0.112 0.888 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 21.673 3.190 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.164 4.164 5 C 0.043 3.957 6 C -0.194 4.194 7 C -0.084 4.084 8 C 0.052 3.948 9 H 0.144 0.856 10 N -0.859 5.859 11 S 2.709 3.291 12 O -0.981 6.981 13 O -0.972 6.972 14 C -0.717 4.717 15 C 0.068 3.932 16 C -0.216 4.216 17 C -0.218 4.218 18 C -0.555 4.555 19 H 0.083 0.917 20 C -0.181 4.181 21 N -0.546 5.546 22 Si 0.779 3.221 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.191 1.191 26 C -0.046 4.046 27 O -0.230 6.230 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.256 0.744 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.130 0.870 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.370 21.217 2.867 21.851 hybrid contribution -0.953 -0.983 0.071 1.371 sum -5.324 20.234 2.938 21.128 Atomic orbital electron populations 1.20772 0.88930 1.03785 1.03035 1.20142 0.97603 0.92291 1.02152 1.21156 0.92285 0.99055 0.96663 1.20552 0.94181 0.95566 1.06091 1.19912 0.83201 0.95297 0.97274 1.20779 0.94933 0.93530 1.10133 1.20534 0.91373 0.99416 0.97095 1.21025 0.93206 0.95725 0.84866 0.85570 1.55624 1.88040 1.28937 1.13317 1.04930 0.77078 0.73111 0.74029 1.93524 1.87751 1.84543 1.32330 1.93517 1.46562 1.85526 1.71568 1.30465 1.18130 1.09331 1.13772 1.17923 0.95270 0.86863 0.93168 1.22160 0.98460 1.04193 0.96819 1.22242 0.96290 1.03976 0.99313 1.21270 1.04708 0.91312 1.38210 0.91666 1.25661 0.98227 0.98692 0.95521 1.69954 1.28575 1.07937 1.48086 0.85656 0.80027 0.77816 0.78638 1.20352 1.21493 1.19074 1.24542 0.98708 0.78963 1.02349 1.86822 1.20403 1.33306 1.82434 0.90620 0.91259 0.89926 0.82215 0.83961 0.84616 0.74352 0.84186 0.84323 0.95401 0.91120 0.93973 0.93892 0.90949 0.94922 0.92943 0.86997 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.02 71.23 0.71 -0.47 16 2 C -0.12 -1.93 5.89 -19.83 -0.12 -2.04 16 3 C -0.07 -1.06 9.68 22.21 0.21 -0.85 16 4 C -0.15 -2.61 10.06 22.45 0.23 -2.38 16 5 C 0.09 2.02 7.04 22.68 0.16 2.18 16 6 C -0.19 -4.21 5.85 -19.43 -0.11 -4.32 16 7 C -0.07 -1.26 9.70 22.18 0.22 -1.05 16 8 C 0.16 3.71 3.56 45.22 0.16 3.87 16 9 H 0.13 2.56 7.27 -2.39 -0.02 2.54 16 10 N -1.10 -28.99 5.49 -168.42 -0.92 -29.92 16 11 S 2.61 91.06 4.45 -56.49 -0.25 90.81 16 12 O -0.99 -40.70 15.84 -127.65 -2.02 -42.72 16 13 O -0.98 -38.25 15.43 -127.65 -1.97 -40.22 16 14 C -0.58 -20.87 4.91 71.98 0.35 -20.52 16 15 C 0.07 3.26 0.52 -52.93 -0.03 3.23 16 16 C -0.16 -7.73 7.58 71.98 0.55 -7.18 16 17 C -0.16 -7.72 7.79 71.98 0.56 -7.16 16 18 C -0.52 -25.98 8.01 25.60 0.20 -25.78 16 19 H 0.07 3.13 7.75 -2.91 -0.02 3.10 16 20 C 0.02 0.96 5.09 84.65 0.43 1.39 16 21 N -0.91 -49.45 9.39 21.45 0.20 -49.25 16 22 Si 0.95 41.18 29.54 68.60 2.03 43.20 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 C 0.03 0.71 7.72 72.56 0.56 1.27 16 27 O -0.32 -7.89 11.11 -95.12 -1.06 -8.95 16 28 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.07 0.75 8.09 -2.38 -0.02 0.73 16 30 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 31 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 32 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.42 10.23 8.78 -96.74 -0.85 9.38 16 35 H 0.14 4.27 7.47 -2.39 -0.02 4.26 16 36 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 37 H 0.03 1.30 5.96 -2.39 -0.01 1.29 16 38 H 0.07 3.78 5.99 -2.39 -0.01 3.76 16 39 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 41 H 0.07 3.85 6.01 -2.39 -0.01 3.84 16 42 H 0.03 1.49 5.46 -2.39 -0.01 1.48 16 43 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 44 H 0.11 2.74 8.10 -2.39 -0.02 2.72 16 45 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -67.17 368.15 0.25 -66.92 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.16 Total: 29.93 kcal Atomic # 6 Polarization: -63.89 SS G_CDS: 4.09 Total: -59.80 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -0.72 Total: -79.16 kcal Atomic # 8 Polarization: -86.84 SS G_CDS: -5.05 Total: -91.89 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: 91.06 SS G_CDS: -0.25 Total: 90.81 kcal Total: -67.17 0.25 -66.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581984770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.652 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds