Wall clock time and date at job start Tue Mar 31 2020 22:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00473 * 2 1 4 4 H 1.48501 * 109.47172 * 270.00265 * 3 2 1 5 5 H 1.48507 * 109.46715 * 29.99864 * 3 2 1 6 6 H 1.48494 * 109.47031 * 149.99846 * 3 2 1 7 7 C 1.37878 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00076 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47360 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47030 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46657 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.46522 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00327 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99448 * 179.97438 * 13 12 11 16 16 C 1.46498 * 119.99633 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47081 * 180.02562 * 16 15 13 18 18 S 1.81400 * 109.47325 * 179.97438 * 17 16 15 19 19 O 1.42107 * 110.54026 * 68.37787 * 18 17 16 20 20 O 1.42102 * 110.54546 * 291.63018 * 18 17 16 21 21 C 1.76199 * 104.45123 * 179.97438 * 18 17 16 22 22 C 1.38238 * 119.99628 * 90.00470 * 21 18 17 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 18 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00344 * 269.98304 * 21 18 17 27 27 H 0.97005 * 119.99381 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47241 * 59.99864 * 9 7 2 29 29 H 1.09004 * 109.47172 * 300.00597 * 9 7 2 30 30 H 1.09002 * 109.46694 * 60.00466 * 10 9 7 31 31 H 1.08992 * 109.46996 * 300.00569 * 10 9 7 32 32 H 1.09005 * 109.46709 * 60.00235 * 11 10 9 33 33 H 1.09000 * 109.46963 * 300.00245 * 11 10 9 34 34 H 1.09002 * 109.46884 * 60.00681 * 12 11 10 35 35 H 1.08996 * 109.47147 * 299.99797 * 12 11 10 36 36 H 0.97002 * 120.00560 * 0.02562 * 15 13 12 37 37 H 1.09002 * 109.46967 * 60.00935 * 16 15 13 38 38 H 1.09000 * 109.47534 * 300.00169 * 16 15 13 39 39 H 1.09005 * 109.47183 * 60.00434 * 17 16 15 40 40 H 1.08996 * 109.47481 * 300.00616 * 17 16 15 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 18 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9872 0.0001 12 6 2.4742 -6.1501 0.0008 13 6 1.7205 -7.4552 0.0008 14 8 0.5078 -7.4551 -0.0002 15 7 2.3944 -8.6224 0.0008 16 6 1.6618 -9.8911 0.0013 17 6 2.6560 -11.0541 0.0018 18 16 1.7489 -12.6250 0.0033 19 8 1.0746 -12.8125 -1.2334 20 8 1.0752 -12.8107 1.2406 21 6 3.0067 -13.8590 0.0030 22 6 3.5008 -14.3424 1.2001 23 6 4.4872 -15.3109 1.1999 24 6 4.9790 -15.7964 0.0027 25 6 4.4887 -15.3091 -1.1943 26 6 3.4990 -14.3439 -1.1942 27 1 -0.4849 0.8401 -0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6245 -2.5571 0.8897 30 1 2.8717 -3.6045 0.8895 31 1 2.8718 -3.6044 -0.8904 32 1 0.8530 -5.0451 -0.8897 33 1 0.8536 -5.0446 0.8903 34 1 3.1007 -6.0920 0.8908 35 1 3.1009 -6.0929 -0.8892 36 1 3.3644 -8.6225 0.0011 37 1 1.0349 -9.9490 -0.8885 38 1 1.0355 -9.9486 0.8915 39 1 3.2826 -10.9960 0.8919 40 1 3.2827 -10.9968 -0.8881 41 1 3.1162 -13.9635 2.1355 42 1 4.8736 -15.6883 2.1352 43 1 5.7494 -16.5533 0.0027 44 1 4.8760 -15.6851 -2.1297 45 1 3.1124 -13.9668 -2.1294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588310095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:41 Heat of formation + Delta-G solvation = -131.863457 kcal Electronic energy + Delta-G solvation = -25182.187291 eV Core-core repulsion = 21290.019597 eV Total energy + Delta-G solvation = -3892.167694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83280 -40.04052 -38.28755 -37.13256 -36.89443 -36.35156 -34.60176 -32.51595 -32.29384 -31.99044 -31.07092 -27.55174 -25.23284 -24.20401 -23.70739 -23.47655 -21.85441 -21.41309 -20.06878 -19.04718 -18.40955 -18.11522 -17.47246 -17.41317 -16.90785 -16.79465 -16.68915 -16.46239 -16.17092 -15.67072 -15.49119 -15.07597 -14.88909 -14.52433 -14.47929 -14.02946 -13.78030 -13.58175 -13.53349 -13.28754 -13.24443 -13.23370 -13.17353 -12.94312 -12.78272 -12.33767 -12.20871 -12.20484 -12.13656 -12.10735 -11.65687 -11.35635 -11.34329 -11.15974 -10.79290 -10.53789 -10.38396 -10.24207 -10.03435 -8.17490 -6.29779 -1.11879 -0.18562 0.30926 1.41304 1.43636 1.54656 1.60963 1.78322 2.12435 2.42948 2.47788 2.87889 3.05268 3.15327 3.27535 3.67709 3.85695 3.87573 3.96854 4.08155 4.12532 4.17693 4.21948 4.37367 4.40213 4.51510 4.61112 4.71543 4.71805 4.73314 4.87108 4.90225 4.97196 5.09260 5.21457 5.26173 5.28757 5.35480 5.40538 5.42023 5.59023 5.79994 5.87198 5.89720 6.26483 6.50922 6.89014 7.23373 7.39974 8.94681 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031639 B = 0.001448 C = 0.001419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.773866 B =19330.580231 C =19721.739130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.099 4.099 12 C -0.126 4.126 13 C 0.508 3.492 14 O -0.587 6.587 15 N -0.709 5.709 16 C 0.114 3.886 17 C -0.602 4.602 18 S 2.507 3.493 19 O -0.969 6.969 20 O -0.969 6.969 21 C -0.663 4.663 22 C -0.042 4.042 23 C -0.146 4.146 24 C -0.066 4.066 25 C -0.146 4.146 26 C -0.042 4.042 27 H 0.262 0.738 28 H -0.016 1.016 29 H -0.016 1.016 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.426 0.574 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.179 0.821 40 H 0.179 0.821 41 H 0.149 0.851 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.374 -36.876 0.011 41.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.021 4.021 10 C -0.133 4.133 11 C -0.138 4.138 12 C -0.166 4.166 13 C 0.297 3.703 14 O -0.467 6.467 15 N -0.365 5.365 16 C -0.012 4.012 17 C -0.732 4.732 18 S 2.691 3.309 19 O -0.966 6.966 20 O -0.966 6.966 21 C -0.752 4.752 22 C -0.061 4.061 23 C -0.165 4.165 24 C -0.084 4.084 25 C -0.165 4.165 26 C -0.060 4.060 27 H 0.071 0.929 28 H 0.002 0.998 29 H 0.002 0.998 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.265 0.735 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.197 0.803 40 H 0.197 0.803 41 H 0.166 0.834 42 H 0.173 0.827 43 H 0.176 0.824 44 H 0.173 0.827 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 16.474 -36.945 0.015 40.451 hybrid contribution 0.678 0.934 -0.009 1.155 sum 17.152 -36.010 0.006 39.887 Atomic orbital electron populations 1.70142 1.08099 1.27701 1.51884 1.26098 0.95768 1.03757 0.94789 0.85375 0.78671 0.78039 0.78497 1.19733 1.21031 1.18256 1.21771 0.93795 0.92222 1.50237 0.91465 1.19079 0.94768 0.93917 0.94293 1.21446 0.97777 0.92623 1.01437 1.21279 0.97631 0.93817 1.01045 1.21687 0.98860 0.88862 1.07164 1.21359 0.87839 0.86828 0.74315 1.90726 1.16691 1.88350 1.50922 1.45721 1.11352 1.03674 1.75768 1.21006 0.93993 0.82709 1.03489 1.30447 1.12740 1.13548 1.16479 1.04759 0.75549 0.77204 0.73350 1.93551 1.71820 1.85618 1.45639 1.93551 1.71829 1.85643 1.45596 1.30239 1.22588 1.22038 1.00359 1.21267 0.93374 0.94642 0.96770 1.21695 0.97250 0.97403 1.00123 1.21957 0.97345 0.96915 0.92189 1.21696 0.97218 0.97428 1.00124 1.21265 0.93373 0.94635 0.96772 0.92912 0.99769 0.99769 0.91936 0.91910 0.93921 0.93927 0.85829 0.85831 0.73539 0.90859 0.90870 0.80307 0.80301 0.83372 0.82710 0.82413 0.82707 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.20 13.29 21.45 0.28 -58.92 16 2 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 9 C 0.02 0.91 4.97 29.85 0.15 1.06 16 10 C -0.10 -3.82 5.15 30.60 0.16 -3.66 16 11 C -0.10 -3.52 4.50 30.60 0.14 -3.38 16 12 C -0.13 -2.85 5.70 29.85 0.17 -2.68 16 13 C 0.51 12.90 7.83 87.66 0.69 13.59 16 14 O -0.59 -21.67 15.98 -3.02 -0.05 -21.72 16 15 N -0.71 -10.83 5.56 -463.05 -2.57 -13.40 16 16 C 0.11 1.79 5.68 86.38 0.49 2.28 16 17 C -0.60 -3.78 6.09 71.98 0.44 -3.34 16 18 S 2.51 36.02 5.16 -56.49 -0.29 35.73 16 19 O -0.97 -20.88 17.12 -127.65 -2.19 -23.06 16 20 O -0.97 -20.87 17.13 -127.65 -2.19 -23.06 16 21 C -0.66 -7.73 5.66 22.27 0.13 -7.60 16 22 C -0.04 -0.42 9.47 22.27 0.21 -0.21 16 23 C -0.15 -1.00 10.05 22.27 0.22 -0.78 16 24 C -0.07 -0.36 10.05 22.27 0.22 -0.13 16 25 C -0.15 -1.00 10.05 22.27 0.22 -0.78 16 26 C -0.04 -0.42 9.47 22.27 0.21 -0.21 16 27 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 28 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 29 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.04 1.67 8.10 -2.38 -0.02 1.65 16 33 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.43 2.60 8.47 -92.71 -0.79 1.82 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.18 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.18 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.15 1.22 7.57 -2.91 -0.02 1.20 16 42 H 0.16 0.30 8.06 -2.91 -0.02 0.28 16 43 H 0.16 -0.06 8.06 -2.91 -0.02 -0.08 16 44 H 0.16 0.30 8.06 -2.91 -0.02 0.28 16 45 H 0.15 1.22 7.57 -2.91 -0.02 1.20 16 Total: -1.00 -92.42 395.80 -0.63 -93.05 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 0.19 Total: 1.59 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 4.14 Total: -36.97 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -2.29 Total: -72.32 kcal Atomic # 8 Polarization: -63.42 SS G_CDS: -4.42 Total: -67.84 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 36.02 SS G_CDS: -0.29 Total: 35.73 kcal Total: -92.42 -0.63 -93.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588310095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.810 kcal (2) G-P(sol) polarization free energy of solvation -92.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds