Wall clock time and date at job start Tue Mar 31 2020 22:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00177 * 2 1 4 4 H 1.48499 * 109.47452 * 84.75196 * 3 2 1 5 5 H 1.48500 * 109.47212 * 204.75634 * 3 2 1 6 6 H 1.48501 * 109.46985 * 324.75257 * 3 2 1 7 7 C 1.39944 * 119.99777 * 180.28198 * 2 1 3 8 8 H 1.08006 * 120.00062 * 19.76491 * 7 2 1 9 9 C 1.41399 * 120.00058 * 199.77014 * 7 2 1 10 10 C 1.40734 * 120.23893 * 25.35311 * 9 7 2 11 11 C 1.37603 * 119.73804 * 179.68037 * 10 9 7 12 12 C 1.38655 * 120.24871 * 0.62320 * 11 10 9 13 13 C 1.38611 * 120.50328 * 359.66860 * 12 11 10 14 14 S 1.76199 * 119.87831 * 180.02562 * 13 12 11 15 15 O 1.42100 * 106.40014 * 23.52611 * 14 13 12 16 16 O 1.42096 * 106.40346 * 156.44162 * 14 13 12 17 17 N 1.65596 * 107.22038 * 269.98513 * 14 13 12 18 18 C 1.46503 * 120.00204 * 64.99867 * 17 14 13 19 19 C 1.52999 * 109.46991 * 164.99985 * 18 17 14 20 20 H 1.08992 * 109.47315 * 304.99894 * 19 18 17 21 21 C 1.52991 * 109.47090 * 65.00245 * 19 18 17 22 22 C 1.53008 * 109.47219 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.46947 * 300.00156 * 22 21 19 24 24 C 1.52994 * 109.47482 * 59.99561 * 23 22 21 25 25 C 1.52999 * 109.47258 * 299.99972 * 24 23 22 26 26 H 1.08997 * 109.47417 * 300.00492 * 25 24 23 27 27 O 1.42901 * 109.47425 * 179.97438 * 25 24 23 28 28 C 1.37642 * 120.24790 * 0.02562 * 13 12 11 29 29 H 0.96995 * 120.00489 * 185.09998 * 1 2 3 30 30 H 1.07994 * 120.13022 * 359.97438 * 10 9 7 31 31 H 1.07999 * 119.87342 * 180.29750 * 11 10 9 32 32 H 1.08000 * 119.74785 * 179.69968 * 12 11 10 33 33 H 0.97001 * 120.00117 * 244.99541 * 17 14 13 34 34 H 1.09003 * 109.46943 * 285.00047 * 18 17 14 35 35 H 1.09001 * 109.46944 * 45.00044 * 18 17 14 36 36 H 1.09000 * 109.47533 * 299.99144 * 21 19 18 37 37 H 1.09000 * 109.47944 * 59.99767 * 21 19 18 38 38 H 1.08996 * 109.47392 * 179.97438 * 22 21 19 39 39 H 1.09004 * 109.46715 * 59.99957 * 22 21 19 40 40 H 1.09008 * 109.46806 * 299.99326 * 23 22 21 41 41 H 1.08996 * 109.47087 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47275 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.46948 * 59.99728 * 24 23 22 44 44 H 0.96694 * 113.99723 * 59.99962 * 27 25 24 45 45 H 1.07997 * 120.12878 * 180.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3790 2.1104 1.3942 5 1 3.5909 1.4106 -0.5863 6 1 1.4996 2.6181 -0.8080 7 6 2.0079 -1.2120 -0.0060 8 1 1.5156 -2.1182 -0.3267 9 6 3.3594 -1.2502 0.4081 10 6 3.8563 -0.2781 1.2962 11 6 5.1716 -0.3290 1.6975 12 6 6.0095 -1.3252 1.2202 13 6 5.5324 -2.2841 0.3403 14 16 6.6115 -3.5432 -0.2554 15 8 7.6553 -3.6628 0.7013 16 8 5.7835 -4.6313 -0.6424 17 7 7.3121 -2.9722 -1.6430 18 6 8.2097 -1.8156 -1.5881 19 6 9.0008 -1.7215 -2.8943 20 1 9.5172 -2.6641 -3.0751 21 6 8.0420 -1.4351 -4.0516 22 6 8.8331 -1.3404 -5.3578 23 6 9.8578 -0.2091 -5.2525 24 6 10.8165 -0.4954 -4.0952 25 6 10.0254 -0.5901 -2.7890 26 1 9.5086 0.3524 -2.6081 27 8 10.9208 -0.8581 -1.7080 28 6 4.2188 -2.2565 -0.0698 29 1 -0.4850 -0.8366 0.0747 30 1 3.2068 0.5018 1.6651 31 1 5.5539 0.4130 2.3828 32 1 7.0416 -1.3546 1.5367 33 1 7.1283 -3.4035 -2.4921 34 1 7.6234 -0.9068 -1.4520 35 1 8.9002 -1.9310 -0.7526 36 1 7.3118 -2.2409 -4.1265 37 1 7.5255 -0.4924 -3.8709 38 1 8.1500 -1.1368 -6.1824 39 1 9.3498 -2.2829 -5.5388 40 1 9.3410 0.7335 -5.0716 41 1 10.4210 -0.1413 -6.1832 42 1 11.5468 0.3104 -4.0204 43 1 11.3332 -1.4380 -4.2761 44 1 11.5993 -0.1807 -1.5822 45 1 3.8490 -3.0048 -0.7550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590763527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:32 Heat of formation + Delta-G solvation = -137.079295 kcal Electronic energy + Delta-G solvation = -27888.608619 eV Core-core repulsion = 23996.214749 eV Total energy + Delta-G solvation = -3892.393870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.60341 -37.93177 -36.73651 -35.94476 -35.36972 -35.06436 -33.92540 -30.85789 -30.57629 -30.15771 -29.83465 -25.38295 -25.03852 -22.80516 -22.43530 -21.51793 -20.74249 -20.13994 -19.26406 -18.43772 -17.46352 -17.16730 -16.54091 -16.10747 -15.51017 -15.36035 -14.91812 -14.72200 -14.29740 -14.15973 -13.95367 -13.77324 -13.58639 -13.34251 -13.18584 -12.76364 -12.59446 -12.25947 -12.21526 -11.86462 -11.72029 -11.68605 -11.60987 -11.54973 -11.49584 -11.30665 -10.91143 -10.87132 -10.72164 -10.60578 -10.37187 -10.19494 -9.98892 -9.94132 -9.57428 -9.35873 -9.15396 -8.27375 -7.93874 -7.47593 -4.71481 0.94510 1.91281 2.45797 3.06788 3.21780 3.38879 3.48314 3.88471 3.92682 4.12884 4.31876 4.34164 4.41961 4.69330 4.81339 4.90650 4.98103 5.04171 5.09942 5.15488 5.18926 5.19616 5.43542 5.57332 5.63802 5.67877 5.79563 5.82332 5.84501 5.91143 5.95920 6.00015 6.02604 6.13571 6.17611 6.25824 6.45135 6.64044 6.94140 7.14634 7.18782 7.36250 7.39911 7.46010 7.48666 7.65765 8.19507 8.29549 8.55646 9.83496 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.003770 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.073702 B = 7425.265890 C = 8419.970642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.042 3.958 3 Si 1.070 2.930 4 H -0.276 1.276 5 H -0.261 1.261 6 H -0.287 1.287 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.078 3.922 10 C -0.206 4.206 11 C -0.088 4.088 12 C -0.163 4.163 13 C -0.620 4.620 14 S 2.690 3.310 15 O -0.970 6.970 16 O -0.972 6.972 17 N -1.120 6.120 18 C 0.125 3.875 19 C -0.084 4.084 20 H 0.085 0.915 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.150 4.150 25 C 0.110 3.890 26 H 0.060 0.940 27 O -0.563 6.563 28 C -0.111 4.111 29 H 0.289 0.711 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.412 0.588 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.377 0.623 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.855 2.728 -9.482 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.178 4.178 3 Si 0.896 3.104 4 H -0.203 1.203 5 H -0.186 1.186 6 H -0.214 1.214 7 C -0.537 4.537 8 H 0.100 0.900 9 C 0.074 3.926 10 C -0.226 4.226 11 C -0.107 4.107 12 C -0.184 4.184 13 C -0.712 4.712 14 S 2.785 3.215 15 O -0.960 6.960 16 O -0.963 6.963 17 N -0.879 5.879 18 C -0.001 4.001 19 C -0.104 4.104 20 H 0.103 0.897 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.188 4.188 25 C 0.050 3.950 26 H 0.078 0.922 27 O -0.368 6.368 28 C -0.132 4.132 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.246 0.754 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.223 0.777 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.359 3.030 -8.970 19.773 hybrid contribution -0.182 -0.698 -0.324 0.791 sum 17.177 2.333 -9.294 19.669 Atomic orbital electron populations 1.70521 1.08190 1.33049 1.30997 1.27316 0.95665 1.04507 0.90347 0.83626 0.75988 0.73108 0.77713 1.20331 1.18552 1.21437 1.20734 0.95515 0.97638 1.39836 0.90008 1.17807 0.93200 0.91254 0.90376 1.21255 0.96060 1.02742 1.02522 1.20691 0.93913 0.97406 0.98714 1.20065 0.98964 0.97031 1.02330 1.29957 1.09893 1.18425 1.12879 1.01664 0.73427 0.73831 0.72572 1.93526 1.56291 1.86070 1.60128 1.93545 1.68833 1.51208 1.82679 1.55558 1.61700 1.44766 1.25889 1.21275 0.92035 0.87917 0.98880 1.21316 0.95096 0.99171 0.94798 0.89703 1.21642 0.97568 1.03056 0.93382 1.21574 0.97888 0.98859 0.97625 1.21496 0.97144 0.99055 0.97911 1.22256 0.98511 1.02459 0.95541 1.21775 0.89917 0.97609 0.85671 0.92210 1.86569 1.46357 1.51565 1.52330 1.20826 0.91083 1.00584 1.00690 0.89921 0.87541 0.87802 0.87016 0.75385 0.91500 0.89291 0.90839 0.91033 0.91581 0.91838 0.91694 0.91821 0.91732 0.91116 0.77650 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.97 13.65 55.55 0.76 -20.21 16 2 C 0.04 1.08 5.40 -17.34 -0.09 0.98 16 3 Si 1.07 23.11 24.83 -169.99 -4.22 18.89 16 4 H -0.28 -5.66 6.65 56.52 0.38 -5.28 16 5 H -0.26 -5.53 6.82 56.52 0.39 -5.14 16 6 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.51 -13.33 9.44 -37.74 -0.36 -13.69 16 8 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 9 C 0.08 1.94 5.20 -106.82 -0.56 1.38 16 10 C -0.21 -4.81 7.20 -38.87 -0.28 -5.09 16 11 C -0.09 -1.84 10.02 -39.66 -0.40 -2.24 16 12 C -0.16 -3.35 9.53 -39.29 -0.37 -3.72 16 13 C -0.62 -13.04 5.94 -39.66 -0.24 -13.28 16 14 S 2.69 49.50 5.73 -107.50 -0.62 48.88 16 15 O -0.97 -19.66 16.74 -57.18 -0.96 -20.61 16 16 O -0.97 -20.15 17.27 -57.18 -0.99 -21.14 16 17 N -1.12 -15.76 5.88 -10.61 -0.06 -15.82 16 18 C 0.13 1.62 5.54 -4.04 -0.02 1.60 16 19 C -0.08 -0.85 2.04 -90.62 -0.18 -1.04 16 20 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.12 -1.08 5.08 -26.73 -0.14 -1.22 16 22 C -0.12 -0.92 5.92 -26.73 -0.16 -1.07 16 23 C -0.12 -0.81 5.92 -26.74 -0.16 -0.97 16 24 C -0.15 -1.06 5.54 -26.73 -0.15 -1.21 16 25 C 0.11 0.97 2.90 -26.73 -0.08 0.90 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 O -0.56 -5.42 12.56 -35.23 -0.44 -5.86 16 28 C -0.11 -2.58 9.26 -38.87 -0.36 -2.94 16 29 H 0.29 7.33 8.73 -40.82 -0.36 6.98 16 30 H 0.11 2.41 4.26 -52.49 -0.22 2.19 16 31 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 32 H 0.11 2.07 7.60 -52.49 -0.40 1.67 16 33 H 0.41 4.83 7.41 -34.47 -0.26 4.57 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.26 7.14 -51.93 -0.37 0.89 16 36 H 0.07 0.67 6.90 -51.93 -0.36 0.31 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.38 2.01 9.08 45.56 0.41 2.43 16 45 H 0.12 2.60 7.60 -52.49 -0.40 2.21 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -31.78 368.42 -10.37 -42.15 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.86 Total: 9.77 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: -3.54 Total: -41.60 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.70 Total: -36.04 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -2.39 Total: -47.61 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.22 Total: 18.89 kcal Atomic # 16 Polarization: 49.50 SS G_CDS: -0.62 Total: 48.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.78 -10.37 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590763527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.927 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds