Wall clock time and date at job start Tue Mar 31 2020 22:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00177 * 2 1 4 4 H 1.48499 * 109.47452 * 84.75196 * 3 2 1 5 5 H 1.48500 * 109.47212 * 204.75634 * 3 2 1 6 6 H 1.48501 * 109.46985 * 324.75257 * 3 2 1 7 7 C 1.39944 * 119.99777 * 180.28198 * 2 1 3 8 8 H 1.08006 * 120.00062 * 19.76491 * 7 2 1 9 9 C 1.41399 * 120.00058 * 199.77014 * 7 2 1 10 10 C 1.40734 * 120.23893 * 25.35311 * 9 7 2 11 11 C 1.37603 * 119.73804 * 179.68037 * 10 9 7 12 12 C 1.38655 * 120.24871 * 0.62320 * 11 10 9 13 13 C 1.38611 * 120.50328 * 359.66860 * 12 11 10 14 14 S 1.76199 * 119.87831 * 180.02562 * 13 12 11 15 15 O 1.42100 * 106.40014 * 23.52611 * 14 13 12 16 16 O 1.42096 * 106.40346 * 156.44162 * 14 13 12 17 17 N 1.65596 * 107.22038 * 269.98513 * 14 13 12 18 18 C 1.46503 * 120.00204 * 64.99867 * 17 14 13 19 19 C 1.52999 * 109.46991 * 164.99985 * 18 17 14 20 20 H 1.08992 * 109.47315 * 304.99894 * 19 18 17 21 21 C 1.52991 * 109.47090 * 65.00245 * 19 18 17 22 22 C 1.53008 * 109.47219 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.46947 * 300.00156 * 22 21 19 24 24 C 1.52994 * 109.47482 * 59.99561 * 23 22 21 25 25 C 1.52999 * 109.47258 * 299.99972 * 24 23 22 26 26 H 1.08997 * 109.47417 * 300.00492 * 25 24 23 27 27 O 1.42901 * 109.47425 * 179.97438 * 25 24 23 28 28 C 1.37642 * 120.24790 * 0.02562 * 13 12 11 29 29 H 0.96995 * 120.00489 * 185.09998 * 1 2 3 30 30 H 1.07994 * 120.13022 * 359.97438 * 10 9 7 31 31 H 1.07999 * 119.87342 * 180.29750 * 11 10 9 32 32 H 1.08000 * 119.74785 * 179.69968 * 12 11 10 33 33 H 0.97001 * 120.00117 * 244.99541 * 17 14 13 34 34 H 1.09003 * 109.46943 * 285.00047 * 18 17 14 35 35 H 1.09001 * 109.46944 * 45.00044 * 18 17 14 36 36 H 1.09000 * 109.47533 * 299.99144 * 21 19 18 37 37 H 1.09000 * 109.47944 * 59.99767 * 21 19 18 38 38 H 1.08996 * 109.47392 * 179.97438 * 22 21 19 39 39 H 1.09004 * 109.46715 * 59.99957 * 22 21 19 40 40 H 1.09008 * 109.46806 * 299.99326 * 23 22 21 41 41 H 1.08996 * 109.47087 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47275 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.46948 * 59.99728 * 24 23 22 44 44 H 0.96694 * 113.99723 * 59.99962 * 27 25 24 45 45 H 1.07997 * 120.12878 * 180.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3790 2.1104 1.3942 5 1 3.5909 1.4106 -0.5863 6 1 1.4996 2.6181 -0.8080 7 6 2.0079 -1.2120 -0.0060 8 1 1.5156 -2.1182 -0.3267 9 6 3.3594 -1.2502 0.4081 10 6 3.8563 -0.2781 1.2962 11 6 5.1716 -0.3290 1.6975 12 6 6.0095 -1.3252 1.2202 13 6 5.5324 -2.2841 0.3403 14 16 6.6115 -3.5432 -0.2554 15 8 7.6553 -3.6628 0.7013 16 8 5.7835 -4.6313 -0.6424 17 7 7.3121 -2.9722 -1.6430 18 6 8.2097 -1.8156 -1.5881 19 6 9.0008 -1.7215 -2.8943 20 1 9.5172 -2.6641 -3.0751 21 6 8.0420 -1.4351 -4.0516 22 6 8.8331 -1.3404 -5.3578 23 6 9.8578 -0.2091 -5.2525 24 6 10.8165 -0.4954 -4.0952 25 6 10.0254 -0.5901 -2.7890 26 1 9.5086 0.3524 -2.6081 27 8 10.9208 -0.8581 -1.7080 28 6 4.2188 -2.2565 -0.0698 29 1 -0.4850 -0.8366 0.0747 30 1 3.2068 0.5018 1.6651 31 1 5.5539 0.4130 2.3828 32 1 7.0416 -1.3546 1.5367 33 1 7.1283 -3.4035 -2.4921 34 1 7.6234 -0.9068 -1.4520 35 1 8.9002 -1.9310 -0.7526 36 1 7.3118 -2.2409 -4.1265 37 1 7.5255 -0.4924 -3.8709 38 1 8.1500 -1.1368 -6.1824 39 1 9.3498 -2.2829 -5.5388 40 1 9.3410 0.7335 -5.0716 41 1 10.4210 -0.1413 -6.1832 42 1 11.5468 0.3104 -4.0204 43 1 11.3332 -1.4380 -4.2761 44 1 11.5993 -0.1807 -1.5822 45 1 3.8490 -3.0048 -0.7550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590763527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:32 Heat of formation + Delta-G solvation = -160.989636 kcal Electronic energy + Delta-G solvation = -27889.645449 eV Core-core repulsion = 23996.214749 eV Total energy + Delta-G solvation = -3893.430700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.31078 -39.71704 -38.32940 -36.97487 -36.74280 -35.96566 -35.78778 -32.40243 -31.91109 -31.68348 -30.48728 -26.94348 -26.24509 -24.17187 -23.45710 -22.56678 -22.23649 -20.97196 -20.73298 -20.05854 -18.61117 -18.20786 -18.11059 -17.41930 -17.12547 -16.40684 -16.13671 -15.79879 -15.64327 -15.51512 -15.09902 -14.98607 -14.66654 -14.51611 -14.33894 -14.05339 -13.91310 -13.66019 -13.55265 -13.39694 -13.25605 -13.15451 -12.95904 -12.66316 -12.58551 -12.34868 -12.32536 -12.00539 -11.85391 -11.73849 -11.54855 -11.41500 -11.34117 -11.07763 -11.04699 -10.62333 -10.44023 -10.01623 -9.77518 -9.42400 -6.68905 -0.56780 0.15685 0.67295 1.33463 1.50430 1.71742 2.05147 2.14302 2.41957 2.70908 3.26861 3.31359 3.38089 3.65266 3.78077 4.04110 4.14473 4.19097 4.21813 4.30499 4.31856 4.42135 4.45856 4.47871 4.53197 4.68108 4.71371 4.73965 4.86801 4.91128 5.01484 5.07824 5.15662 5.20946 5.24913 5.28953 5.33735 5.36297 5.37469 5.43239 5.56398 5.59698 5.65528 5.83640 6.07394 6.25307 6.43975 6.67533 6.99156 7.88604 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.003770 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.073702 B = 7425.265890 C = 8419.970642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.012 3.988 3 Si 1.099 2.901 4 H -0.253 1.253 5 H -0.255 1.255 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.049 0.951 9 C 0.058 3.942 10 C -0.212 4.212 11 C -0.089 4.089 12 C -0.147 4.147 13 C -0.628 4.628 14 S 2.717 3.283 15 O -0.983 6.983 16 O -0.997 6.997 17 N -1.104 6.104 18 C 0.119 3.881 19 C -0.081 4.081 20 H 0.083 0.917 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.143 4.143 25 C 0.110 3.890 26 H 0.064 0.936 27 O -0.583 6.583 28 C -0.133 4.133 29 H 0.280 0.720 30 H 0.113 0.887 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.424 0.576 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.394 0.606 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.263 4.437 -9.577 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.202 4.202 3 Si 0.918 3.082 4 H -0.179 1.179 5 H -0.179 1.179 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.068 0.932 9 C 0.054 3.946 10 C -0.231 4.231 11 C -0.108 4.108 12 C -0.168 4.168 13 C -0.716 4.716 14 S 2.809 3.191 15 O -0.973 6.973 16 O -0.988 6.988 17 N -0.867 5.867 18 C -0.007 4.007 19 C -0.101 4.101 20 H 0.101 0.899 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.181 4.181 25 C 0.050 3.950 26 H 0.082 0.918 27 O -0.391 6.391 28 C -0.153 4.153 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.262 0.738 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.244 0.756 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.754 4.741 -9.052 23.133 hybrid contribution -0.989 -1.340 -0.264 1.686 sum 19.765 3.401 -9.316 22.114 Atomic orbital electron populations 1.70591 1.08756 1.32436 1.33834 1.28429 0.95739 1.06866 0.89202 0.83318 0.75340 0.70318 0.79183 1.17865 1.17901 1.20459 1.20674 0.96808 0.97203 1.42933 0.93234 1.17986 0.92884 0.92578 0.91122 1.21497 0.97409 1.02244 1.01916 1.21175 0.92782 0.98176 0.98661 1.20602 1.00253 0.95707 1.00208 1.30385 1.09472 1.19091 1.12678 1.00860 0.72562 0.72782 0.72906 1.93509 1.56194 1.86067 1.61485 1.93510 1.69722 1.52369 1.83164 1.55205 1.61021 1.45294 1.25212 1.21467 0.91790 0.87050 1.00367 1.21317 0.95313 0.99935 0.93525 0.89910 1.21660 0.97520 1.02708 0.93938 1.21566 0.98055 0.99432 0.96732 1.21505 0.96971 0.98667 0.98372 1.22197 0.98541 1.02889 0.94478 1.21782 0.89828 0.96867 0.86506 0.91826 1.86519 1.47105 1.52851 1.52659 1.20838 0.92146 1.00751 1.01607 0.90948 0.86905 0.83476 0.84145 0.73833 0.91367 0.90119 0.91202 0.91394 0.91118 0.91611 0.91561 0.90688 0.90058 0.91581 0.75624 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.16 13.65 21.83 0.30 -44.86 16 2 C 0.01 0.65 5.40 85.26 0.46 1.11 16 3 Si 1.10 45.79 24.83 68.60 1.70 47.50 16 4 H -0.25 -9.56 6.65 99.48 0.66 -8.89 16 5 H -0.25 -10.24 6.82 99.48 0.68 -9.56 16 6 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.55 -30.11 9.44 23.46 0.22 -29.89 16 8 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 9 C 0.06 2.92 5.20 -21.29 -0.11 2.81 16 10 C -0.21 -9.50 7.20 22.73 0.16 -9.34 16 11 C -0.09 -3.41 10.02 22.22 0.22 -3.18 16 12 C -0.15 -5.58 9.53 22.46 0.21 -5.36 16 13 C -0.63 -25.56 5.94 22.22 0.13 -25.43 16 14 S 2.72 96.50 5.73 -56.49 -0.32 96.18 16 15 O -0.98 -37.74 16.74 -128.00 -2.14 -39.89 16 16 O -1.00 -41.07 17.27 -128.00 -2.21 -43.28 16 17 N -1.10 -29.37 5.88 -187.48 -1.10 -30.47 16 18 C 0.12 2.83 5.54 86.38 0.48 3.31 16 19 C -0.08 -1.48 2.04 -10.79 -0.02 -1.50 16 20 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 21 C -0.12 -1.98 5.08 30.59 0.16 -1.82 16 22 C -0.12 -1.55 5.92 30.60 0.18 -1.37 16 23 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 24 C -0.14 -1.61 5.54 30.59 0.17 -1.44 16 25 C 0.11 1.66 2.90 30.60 0.09 1.75 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 O -0.58 -9.75 12.56 -148.98 -1.87 -11.62 16 28 C -0.13 -6.26 9.26 22.73 0.21 -6.05 16 29 H 0.28 15.13 8.73 -92.71 -0.81 14.32 16 30 H 0.11 4.89 4.26 -2.91 -0.01 4.87 16 31 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 32 H 0.14 4.55 7.60 -2.91 -0.02 4.53 16 33 H 0.42 9.37 7.41 -96.75 -0.72 8.66 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 2.10 7.14 -2.39 -0.02 2.08 16 36 H 0.07 1.17 6.90 -2.39 -0.02 1.15 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.39 3.16 9.08 -74.06 -0.67 2.48 16 45 H 0.11 5.11 7.60 -2.91 -0.02 5.09 16 Total: -1.00 -69.36 368.42 -3.38 -72.74 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.48 Total: 31.20 kcal Atomic # 6 Polarization: -80.24 SS G_CDS: 2.75 Total: -77.49 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -0.80 Total: -75.34 kcal Atomic # 8 Polarization: -88.56 SS G_CDS: -6.22 Total: -94.78 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.70 Total: 47.50 kcal Atomic # 16 Polarization: 96.50 SS G_CDS: -0.32 Total: 96.18 kcal Total: -69.36 -3.38 -72.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590763527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.249 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds