Wall clock time and date at job start Tue Mar 31 2020 22:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00314 * 2 1 4 4 H 1.48493 * 109.47602 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47162 * 300.00202 * 3 2 1 6 6 H 1.48500 * 109.47100 * 59.99829 * 3 2 1 7 7 C 1.37884 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99752 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.88721 * 62.42191 * 9 7 2 11 11 C 1.55154 * 111.03618 * 186.32624 * 9 7 2 12 12 C 1.54335 * 103.02045 * 153.39318 * 11 9 7 13 13 N 1.47026 * 107.26473 * 338.14470 * 12 11 9 14 14 C 1.34774 * 125.64680 * 178.84840 * 13 12 11 15 15 O 1.21592 * 119.99744 * 179.69131 * 14 13 12 16 16 N 1.34776 * 120.00327 * 359.69214 * 14 13 12 17 17 C 1.46495 * 120.00163 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47398 * 179.97438 * 17 16 14 19 19 N 1.46495 * 109.47398 * 180.02562 * 18 17 16 20 20 C 1.34942 * 126.03819 * 125.33743 * 19 18 17 21 21 C 1.35320 * 107.74418 * 180.15921 * 20 19 18 22 22 N 1.48026 * 126.04061 * 179.83941 * 21 20 19 23 23 O 1.21793 * 119.99866 * 179.71234 * 22 21 20 24 24 O 1.21799 * 119.99978 * 359.70982 * 22 21 20 25 25 C 1.39869 * 107.92133 * 359.57157 * 21 20 19 26 26 N 1.30838 * 108.20172 * 0.26270 * 25 21 20 27 27 C 1.47424 * 108.70299 * 358.58430 * 13 12 11 28 28 H 0.96998 * 119.99590 * 0.02562 * 1 2 3 29 29 H 0.96696 * 114.00276 * 297.57492 * 10 9 7 30 30 H 1.08996 * 110.72547 * 271.95446 * 11 9 7 31 31 H 1.09003 * 110.72120 * 35.22887 * 11 9 7 32 32 H 1.08996 * 109.99359 * 218.66727 * 12 11 9 33 33 H 1.08997 * 109.77929 * 97.49546 * 12 11 9 34 34 H 0.96996 * 119.99574 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.47576 * 59.99852 * 17 16 14 36 36 H 1.09007 * 109.47089 * 299.99237 * 17 16 14 37 37 H 1.09001 * 109.46727 * 59.99517 * 18 17 16 38 38 H 1.09006 * 109.46977 * 300.00053 * 18 17 16 39 39 H 1.07999 * 126.13008 * 0.02562 * 20 19 18 40 40 H 1.08001 * 125.90172 * 180.24676 * 25 21 20 41 41 H 1.08994 * 110.36597 * 143.19662 * 27 13 12 42 42 H 1.09004 * 110.36325 * 265.40607 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4614 -2.6316 -1.1832 11 6 2.2190 -3.7011 0.1607 12 6 1.3286 -4.7801 0.8126 13 7 0.2054 -4.0864 1.4598 14 6 -0.8079 -4.6797 2.1214 15 8 -1.6842 -4.0031 2.6243 16 7 -0.8500 -6.0227 2.2256 17 6 -1.9517 -6.6675 2.9443 18 6 -1.7613 -8.1854 2.9142 19 7 -2.8633 -8.8302 3.6324 20 6 -3.6767 -9.7891 3.1427 21 6 -4.5613 -10.1149 4.1135 22 7 -5.6399 -11.1230 4.0063 23 8 -6.3738 -11.3328 4.9554 24 8 -5.7934 -11.7427 2.9691 25 6 -4.2726 -9.3351 5.2382 26 7 -3.2549 -8.5646 4.9510 27 6 0.3745 -2.6342 1.2706 28 1 -0.4849 0.8401 -0.0004 29 1 -0.2245 -1.9564 -1.2760 30 1 2.5842 -4.0344 -0.8106 31 1 3.0492 -3.4428 0.8181 32 1 1.8998 -5.3351 1.5567 33 1 0.9531 -5.4599 0.0477 34 1 -0.1512 -6.5624 1.8241 35 1 -2.8971 -6.4108 2.4663 36 1 -1.9620 -6.3228 3.9784 37 1 -0.8159 -8.4424 3.3920 38 1 -1.7511 -8.5298 1.8801 39 1 -3.6313 -10.2181 2.1526 40 1 -4.7990 -9.3637 6.1808 41 1 -0.5930 -2.1566 1.1163 42 1 0.8802 -2.1959 2.1310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591990436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:17 Heat of formation + Delta-G solvation = 9.196429 kcal Electronic energy + Delta-G solvation = -28517.831459 eV Core-core repulsion = 24117.780117 eV Total energy + Delta-G solvation = -4400.051342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.81245 -41.71350 -39.86667 -37.67144 -36.74998 -35.91405 -34.36280 -33.51800 -32.30052 -31.78053 -30.47952 -29.27575 -27.84084 -26.31979 -25.24223 -24.03475 -22.62229 -22.07713 -21.75812 -19.98846 -19.76657 -19.29334 -18.72078 -17.87325 -17.73173 -17.22130 -17.10379 -16.53928 -15.77818 -15.51316 -15.24057 -14.98265 -14.72837 -14.53492 -14.14718 -14.00109 -13.48841 -13.13408 -12.89713 -12.86430 -12.46484 -12.17997 -12.01128 -11.79437 -11.73522 -11.51611 -11.38019 -11.34110 -11.11094 -10.92052 -10.71146 -10.58715 -10.52321 -10.27492 -10.05118 -9.84277 -9.46038 -9.17889 -8.76989 -8.45418 -7.85347 -6.34302 -4.44276 -0.10020 0.78163 0.92493 1.65607 1.83113 2.84196 3.15574 3.24747 3.27514 3.49420 3.52761 3.74063 3.96432 4.08599 4.18498 4.27580 4.39325 4.46971 4.50307 4.92669 5.20710 5.26441 5.32174 5.44943 5.50723 5.63822 5.70252 5.87194 5.97302 6.09522 6.36315 6.39781 6.47681 6.58688 6.76836 6.79483 7.10313 7.21703 7.41615 7.43618 7.67699 7.95177 8.32298 8.60022 8.90428 9.22249 9.30856 10.72776 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031091 B = 0.001815 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.358857 B =15425.906097 C =15653.718499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.719 3.281 15 O -0.591 6.591 16 N -0.752 5.752 17 C 0.131 3.869 18 C 0.117 3.883 19 N -0.342 5.342 20 C 0.159 3.841 21 C -0.195 4.195 22 N 0.070 4.930 23 O -0.163 6.163 24 O -0.175 6.175 25 C 0.115 3.885 26 N -0.259 5.259 27 C 0.113 3.887 28 H 0.270 0.730 29 H 0.382 0.618 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.395 0.605 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.207 0.793 40 H 0.212 0.788 41 H 0.086 0.914 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.258 -19.540 5.369 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.362 5.362 14 C 0.421 3.579 15 O -0.469 6.469 16 N -0.411 5.411 17 C 0.005 3.995 18 C -0.003 4.003 19 N -0.120 5.120 20 C 0.004 3.996 21 C -0.293 4.293 22 N 0.587 4.413 23 O -0.378 6.378 24 O -0.386 6.386 25 C -0.075 4.075 26 N -0.078 5.078 27 C -0.009 4.009 28 H 0.080 0.920 29 H 0.232 0.768 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.229 0.771 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.224 0.776 40 H 0.228 0.772 41 H 0.104 0.896 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.283 -17.958 6.081 19.003 hybrid contribution -0.429 0.208 -0.379 0.609 sum -1.712 -17.750 5.702 18.722 Atomic orbital electron populations 1.69719 1.05997 1.27895 1.49376 1.25092 0.95053 0.99838 0.93295 0.86344 0.80025 0.82703 0.77807 1.19576 1.20728 1.20758 1.21482 0.93678 0.89970 1.52555 0.91431 1.19638 0.86614 0.91628 0.81354 1.86096 1.51587 1.57176 1.44312 1.22594 0.97553 0.95121 1.00125 1.21960 0.88279 0.96182 0.95519 1.47960 1.23018 1.09978 1.55269 1.15401 0.82071 0.80862 0.79616 1.90925 1.39577 1.62947 1.53441 1.44834 1.28560 1.05957 1.61765 1.21168 0.91083 0.88066 0.99209 1.22229 0.87020 0.94001 0.97078 1.48681 1.25093 1.27892 1.10349 1.22418 0.88279 0.89228 0.99650 1.21068 1.01614 1.06764 0.99894 1.42447 0.99697 0.99148 1.00049 1.94559 1.41738 1.70960 1.30501 1.94557 1.76937 1.48459 1.18689 1.24057 0.93714 0.90805 0.98917 1.77873 1.14832 1.21950 0.93153 1.23197 1.02699 0.75297 0.99690 0.91987 0.76848 0.90675 0.90348 0.93042 0.92611 0.77141 0.90916 0.89866 0.87382 0.86574 0.77598 0.77183 0.89567 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.22 10.69 55.43 0.59 -22.63 16 2 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 3 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -13.48 8.27 -34.44 -0.28 -13.76 16 8 H 0.07 1.66 7.79 -52.49 -0.41 1.25 16 9 C 0.25 5.69 0.87 -89.63 -0.08 5.61 16 10 O -0.58 -14.15 13.16 -35.23 -0.46 -14.61 16 11 C -0.12 -2.11 6.13 -24.89 -0.15 -2.26 16 12 C 0.10 1.60 6.15 -3.06 -0.02 1.58 16 13 N -0.63 -11.91 3.33 -176.23 -0.59 -12.50 16 14 C 0.72 13.28 8.49 -86.92 -0.74 12.54 16 15 O -0.59 -13.59 16.60 5.28 0.09 -13.50 16 16 N -0.75 -9.04 5.52 -65.22 -0.36 -9.40 16 17 C 0.13 1.30 5.86 -4.04 -0.02 1.27 16 18 C 0.12 0.60 6.62 -4.04 -0.03 0.57 16 19 N -0.34 -2.35 3.68 -61.36 -0.23 -2.58 16 20 C 0.16 0.97 11.13 -17.22 -0.19 0.78 16 21 C -0.20 -1.65 7.11 -80.37 -0.57 -2.22 16 22 N 0.07 0.75 4.45 33.75 0.15 0.90 16 23 O -0.16 -1.89 19.05 -29.46 -0.56 -2.45 16 24 O -0.18 -1.98 19.02 -29.46 -0.56 -2.54 16 25 C 0.11 0.90 11.75 -17.36 -0.20 0.70 16 26 N -0.26 -2.33 12.42 30.62 0.38 -1.95 16 27 C 0.11 2.60 5.38 -2.53 -0.01 2.58 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.38 9.61 7.56 45.56 0.34 9.95 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.39 3.44 7.46 -40.82 -0.30 3.13 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.12 0.24 8.07 -51.93 -0.42 -0.18 16 39 H 0.21 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.21 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.09 2.27 7.33 -51.93 -0.38 1.89 16 42 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -33.33 369.37 -7.92 -41.24 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.52 Total: 10.52 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -2.40 Total: 9.10 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.05 Total: -48.15 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.50 Total: -33.11 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.33 -7.92 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.440 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds