Wall clock time and date at job start Tue Mar 31 2020 22:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00314 * 2 1 4 4 H 1.48493 * 109.47602 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47162 * 300.00202 * 3 2 1 6 6 H 1.48500 * 109.47100 * 59.99829 * 3 2 1 7 7 C 1.37884 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99752 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.88721 * 62.42191 * 9 7 2 11 11 C 1.55154 * 111.03618 * 186.32624 * 9 7 2 12 12 C 1.54335 * 103.02045 * 153.39318 * 11 9 7 13 13 N 1.47026 * 107.26473 * 338.14470 * 12 11 9 14 14 C 1.34774 * 125.64680 * 178.84840 * 13 12 11 15 15 O 1.21592 * 119.99744 * 179.69131 * 14 13 12 16 16 N 1.34776 * 120.00327 * 359.69214 * 14 13 12 17 17 C 1.46495 * 120.00163 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47398 * 179.97438 * 17 16 14 19 19 N 1.46495 * 109.47398 * 180.02562 * 18 17 16 20 20 C 1.34942 * 126.03819 * 125.33743 * 19 18 17 21 21 C 1.35320 * 107.74418 * 180.15921 * 20 19 18 22 22 N 1.48026 * 126.04061 * 179.83941 * 21 20 19 23 23 O 1.21793 * 119.99866 * 179.71234 * 22 21 20 24 24 O 1.21799 * 119.99978 * 359.70982 * 22 21 20 25 25 C 1.39869 * 107.92133 * 359.57157 * 21 20 19 26 26 N 1.30838 * 108.20172 * 0.26270 * 25 21 20 27 27 C 1.47424 * 108.70299 * 358.58430 * 13 12 11 28 28 H 0.96998 * 119.99590 * 0.02562 * 1 2 3 29 29 H 0.96696 * 114.00276 * 297.57492 * 10 9 7 30 30 H 1.08996 * 110.72547 * 271.95446 * 11 9 7 31 31 H 1.09003 * 110.72120 * 35.22887 * 11 9 7 32 32 H 1.08996 * 109.99359 * 218.66727 * 12 11 9 33 33 H 1.08997 * 109.77929 * 97.49546 * 12 11 9 34 34 H 0.96996 * 119.99574 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.47576 * 59.99852 * 17 16 14 36 36 H 1.09007 * 109.47089 * 299.99237 * 17 16 14 37 37 H 1.09001 * 109.46727 * 59.99517 * 18 17 16 38 38 H 1.09006 * 109.46977 * 300.00053 * 18 17 16 39 39 H 1.07999 * 126.13008 * 0.02562 * 20 19 18 40 40 H 1.08001 * 125.90172 * 180.24676 * 25 21 20 41 41 H 1.08994 * 110.36597 * 143.19662 * 27 13 12 42 42 H 1.09004 * 110.36325 * 265.40607 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4614 -2.6316 -1.1832 11 6 2.2190 -3.7011 0.1607 12 6 1.3286 -4.7801 0.8126 13 7 0.2054 -4.0864 1.4598 14 6 -0.8079 -4.6797 2.1214 15 8 -1.6842 -4.0031 2.6243 16 7 -0.8500 -6.0227 2.2256 17 6 -1.9517 -6.6675 2.9443 18 6 -1.7613 -8.1854 2.9142 19 7 -2.8633 -8.8302 3.6324 20 6 -3.6767 -9.7891 3.1427 21 6 -4.5613 -10.1149 4.1135 22 7 -5.6399 -11.1230 4.0063 23 8 -6.3738 -11.3328 4.9554 24 8 -5.7934 -11.7427 2.9691 25 6 -4.2726 -9.3351 5.2382 26 7 -3.2549 -8.5646 4.9510 27 6 0.3745 -2.6342 1.2706 28 1 -0.4849 0.8401 -0.0004 29 1 -0.2245 -1.9564 -1.2760 30 1 2.5842 -4.0344 -0.8106 31 1 3.0492 -3.4428 0.8181 32 1 1.8998 -5.3351 1.5567 33 1 0.9531 -5.4599 0.0477 34 1 -0.1512 -6.5624 1.8241 35 1 -2.8971 -6.4108 2.4663 36 1 -1.9620 -6.3228 3.9784 37 1 -0.8159 -8.4424 3.3920 38 1 -1.7511 -8.5298 1.8801 39 1 -3.6313 -10.2181 2.1526 40 1 -4.7990 -9.3637 6.1808 41 1 -0.5930 -2.1566 1.1163 42 1 0.8802 -2.1959 2.1310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591990436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:16 Heat of formation + Delta-G solvation = -16.707882 kcal Electronic energy + Delta-G solvation = -28518.954755 eV Core-core repulsion = 24117.780117 eV Total energy + Delta-G solvation = -4401.174637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.45256 -42.39665 -41.29496 -39.21178 -37.54366 -36.88218 -36.06022 -34.41556 -34.23653 -32.38907 -31.89869 -30.22904 -29.42459 -27.31103 -26.65838 -25.00391 -23.96347 -22.68581 -22.39333 -21.47587 -21.16564 -20.07938 -19.49348 -19.25521 -18.83071 -18.56339 -17.85799 -17.35388 -17.14544 -16.86344 -16.50895 -16.25281 -15.77344 -15.66189 -15.41379 -14.84114 -14.67781 -14.59055 -14.46941 -13.82612 -13.54246 -13.45642 -13.32185 -13.12460 -12.87726 -12.70748 -12.54159 -12.50819 -12.33742 -12.22474 -12.20372 -12.07687 -12.05919 -11.44153 -11.19673 -11.14128 -10.68339 -10.63954 -10.39325 -10.28357 -9.36779 -8.25774 -6.42542 -0.82632 0.16474 0.34619 1.04875 1.20088 1.39681 1.43773 1.53889 1.68931 2.08754 2.37241 2.85970 3.00984 3.13996 3.31217 3.41955 3.60146 3.80271 3.89835 3.98126 4.08553 4.12347 4.19327 4.36219 4.51796 4.62158 4.66285 4.75785 4.77005 5.08029 5.10689 5.14331 5.26911 5.31567 5.38015 5.40339 5.47294 5.75962 5.91035 6.03554 6.13956 6.58468 6.65472 7.01366 7.26927 7.34465 7.50508 8.79264 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031091 B = 0.001815 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.358857 B =15425.906097 C =15653.718499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.586 6.586 11 C -0.112 4.112 12 C 0.106 3.894 13 N -0.632 5.632 14 C 0.712 3.288 15 O -0.646 6.646 16 N -0.723 5.723 17 C 0.132 3.868 18 C 0.125 3.875 19 N -0.342 5.342 20 C 0.184 3.816 21 C -0.217 4.217 22 N 0.074 4.926 23 O -0.199 6.199 24 O -0.183 6.183 25 C 0.116 3.884 26 N -0.292 5.292 27 C 0.128 3.872 28 H 0.268 0.732 29 H 0.372 0.628 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.417 0.583 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.132 0.868 38 H 0.161 0.839 39 H 0.247 0.753 40 H 0.225 0.775 41 H 0.041 0.959 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 -21.812 4.475 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.190 3.810 10 O -0.394 6.394 11 C -0.150 4.150 12 C -0.016 4.016 13 N -0.368 5.368 14 C 0.413 3.587 15 O -0.529 6.529 16 N -0.382 5.382 17 C 0.006 3.994 18 C 0.006 3.994 19 N -0.119 5.119 20 C 0.028 3.972 21 C -0.315 4.315 22 N 0.585 4.415 23 O -0.406 6.406 24 O -0.394 6.394 25 C -0.074 4.074 26 N -0.111 5.111 27 C 0.004 3.996 28 H 0.077 0.923 29 H 0.221 0.779 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.255 0.745 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.150 0.850 38 H 0.179 0.821 39 H 0.263 0.737 40 H 0.241 0.759 41 H 0.060 0.940 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.895 -20.324 5.212 21.001 hybrid contribution -1.060 0.941 -0.127 1.423 sum -0.165 -19.383 5.085 20.039 Atomic orbital electron populations 1.69846 1.07166 1.28253 1.50224 1.25830 0.95724 1.02858 0.93213 0.85440 0.79284 0.79125 0.77376 1.18612 1.20711 1.21082 1.21853 0.94002 0.91268 1.52115 0.91221 1.19879 0.87234 0.93277 0.80566 1.86085 1.51441 1.56717 1.45127 1.22601 0.97193 0.93746 1.01419 1.22188 0.86950 0.95384 0.97054 1.47860 1.24431 1.08642 1.55855 1.15657 0.81207 0.82642 0.79147 1.90887 1.41580 1.64846 1.55567 1.44453 1.29404 1.03594 1.60730 1.21175 0.89589 0.91511 0.97129 1.22385 0.87308 0.89953 0.99757 1.48805 1.25419 1.27954 1.09741 1.23021 0.86168 0.87691 1.00279 1.21221 1.01984 1.07108 1.01232 1.42676 0.99927 0.99261 0.99631 1.94556 1.43095 1.72109 1.30817 1.94529 1.77218 1.48971 1.18731 1.24367 0.93321 0.90113 0.99549 1.77861 1.15608 1.22846 0.94753 1.22656 1.00012 0.77819 0.99110 0.92274 0.77946 0.89464 0.89415 0.88613 0.90072 0.74498 0.92709 0.92395 0.85022 0.82102 0.73672 0.75887 0.94011 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.33 10.69 21.45 0.23 -49.10 16 2 C 0.02 1.26 5.29 84.66 0.45 1.71 16 3 Si 0.96 41.03 29.54 68.60 2.03 43.06 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.55 -27.81 8.27 25.60 0.21 -27.60 16 8 H 0.07 3.38 7.79 -2.91 -0.02 3.35 16 9 C 0.23 10.55 0.87 -10.15 -0.01 10.54 16 10 O -0.59 -28.62 13.16 -148.98 -1.96 -30.58 16 11 C -0.11 -3.77 6.13 31.79 0.19 -3.58 16 12 C 0.11 2.84 6.15 86.73 0.53 3.38 16 13 N -0.63 -23.36 3.33 -829.74 -2.76 -26.11 16 14 C 0.71 25.78 8.49 179.06 1.52 27.30 16 15 O -0.65 -30.66 16.60 -4.01 -0.07 -30.73 16 16 N -0.72 -15.32 5.52 -478.53 -2.64 -17.96 16 17 C 0.13 2.34 5.86 86.38 0.51 2.85 16 18 C 0.13 0.72 6.62 86.38 0.57 1.30 16 19 N -0.34 -3.62 3.68 -348.06 -1.28 -4.90 16 20 C 0.18 1.61 11.13 83.54 0.93 2.54 16 21 C -0.22 -3.30 7.11 36.10 0.26 -3.04 16 22 N 0.07 1.53 4.45 -47.12 -0.21 1.32 16 23 O -0.20 -4.68 19.05 18.90 0.36 -4.32 16 24 O -0.18 -3.92 19.02 18.89 0.36 -3.56 16 25 C 0.12 1.73 11.75 85.24 1.00 2.73 16 26 N -0.29 -4.83 12.42 -57.02 -0.71 -5.53 16 27 C 0.13 6.03 5.38 86.85 0.47 6.50 16 28 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.37 19.39 7.56 -74.06 -0.56 18.83 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.09 2.77 8.03 -2.39 -0.02 2.75 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.42 5.18 7.46 -92.71 -0.69 4.49 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.16 -0.41 8.07 -2.38 -0.02 -0.43 16 39 H 0.25 0.00 8.06 -2.91 -0.02 -0.02 16 40 H 0.22 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.04 2.32 7.33 -2.39 -0.02 2.30 16 42 H 0.04 1.89 8.03 -2.38 -0.02 1.87 16 Total: -1.00 -78.62 369.37 -0.18 -78.80 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.16 Total: 25.00 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 6.63 Total: 24.61 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -7.37 Total: -102.28 kcal Atomic # 8 Polarization: -67.87 SS G_CDS: -1.31 Total: -69.18 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -78.62 -0.18 -78.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.092 kcal (2) G-P(sol) polarization free energy of solvation -78.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds