Wall clock time and date at job start Tue Mar 31 2020 22:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00073 * 2 1 4 4 C 1.50697 * 109.46863 * 274.99925 * 3 2 1 5 5 H 1.07998 * 120.00462 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99742 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99677 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00029 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47090 * 59.99785 * 8 6 4 10 10 H 1.48497 * 109.47277 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47400 * 300.00138 * 8 6 4 12 12 S 1.65602 * 120.00312 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.39983 * 336.46248 * 12 2 1 14 14 O 1.42092 * 106.40801 * 203.54071 * 12 2 1 15 15 N 1.65605 * 107.21716 * 89.99614 * 12 2 1 16 16 C 1.46850 * 120.21949 * 270.02739 * 15 12 2 17 17 C 1.53821 * 109.80412 * 226.98325 * 16 15 12 18 18 N 1.45652 * 107.82472 * 308.83736 * 17 16 15 19 19 C 1.46413 * 116.81492 * 186.03335 * 18 17 16 20 20 C 1.54752 * 106.02647 * 208.34331 * 19 18 17 21 21 F 1.39905 * 110.33282 * 122.41009 * 20 19 18 22 22 F 1.39899 * 110.33375 * 244.53683 * 20 19 18 23 23 C 1.55282 * 105.00429 * 3.52532 * 20 19 18 24 24 C 1.48730 * 109.85251 * 65.96293 * 18 17 16 25 25 H 1.08998 * 111.28663 * 50.89346 * 24 18 17 26 26 C 1.47656 * 120.21690 * 90.00411 * 15 12 2 27 27 H 1.09007 * 109.46916 * 269.99719 * 1 2 3 28 28 H 1.08998 * 109.47297 * 29.99663 * 1 2 3 29 29 H 1.09000 * 109.47061 * 149.99824 * 1 2 3 30 30 H 1.08995 * 109.47173 * 35.00246 * 3 2 1 31 31 H 1.09006 * 109.46973 * 155.00288 * 3 2 1 32 32 H 0.97005 * 119.99399 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.41964 * 347.09112 * 16 15 12 34 34 H 1.09005 * 109.41753 * 106.95941 * 16 15 12 35 35 H 1.09011 * 109.78642 * 68.41752 * 17 16 15 36 36 H 1.08996 * 109.79171 * 189.19638 * 17 16 15 37 37 H 1.08995 * 110.14075 * 327.48814 * 19 18 17 38 38 H 1.08995 * 110.13575 * 89.20648 * 19 18 17 39 39 H 1.08998 * 110.86974 * 140.36208 * 23 20 19 40 40 H 1.08996 * 110.86588 * 263.83257 * 23 20 19 41 41 H 1.08996 * 110.01019 * 249.07259 * 26 15 12 42 42 H 1.09007 * 110.00646 * 10.47500 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9282 1.1938 -2.2331 6 6 2.9997 2.9509 -1.6664 7 7 3.5025 3.6474 -0.6705 8 14 3.1776 3.5672 -3.4207 9 1 1.8309 3.7726 -4.0121 10 1 3.9191 4.8538 -3.4207 11 1 3.9234 2.5655 -4.2242 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4063 0.5455 14 8 3.5759 -1.1566 0.5449 15 7 2.5381 -1.8594 -1.5810 16 6 1.5482 -2.6832 -2.2867 17 6 2.2586 -3.8217 -3.0385 18 7 3.3257 -3.2321 -3.8354 19 6 4.0469 -4.1290 -4.7405 20 6 5.4692 -3.5367 -4.8852 21 9 6.4294 -4.4776 -4.4980 22 9 5.6940 -3.1287 -6.2044 23 6 5.4949 -2.3141 -3.9281 24 6 4.3626 -2.6518 -2.9408 25 1 4.6836 -3.3717 -2.1880 26 6 3.7530 -1.4122 -2.2911 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6502 2.0043 0.5894 31 1 3.1858 1.1177 0.4343 32 1 3.9653 4.4814 -0.8471 33 1 0.8486 -3.1061 -1.5658 34 1 1.0038 -2.0641 -2.9998 35 1 2.6795 -4.5294 -2.3241 36 1 1.5496 -4.3327 -3.6898 37 1 4.0990 -5.1305 -4.3136 38 1 3.5525 -4.1594 -5.7113 39 1 6.4524 -2.2452 -3.4118 40 1 5.2805 -1.3927 -4.4694 41 1 3.4904 -0.6813 -3.0558 42 1 4.4590 -0.9764 -1.5841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592058437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:50 Heat of formation + Delta-G solvation = -151.783086 kcal Electronic energy + Delta-G solvation = -29804.575387 eV Core-core repulsion = 25389.607134 eV Total energy + Delta-G solvation = -4414.968253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.06731 -47.18860 -39.76340 -36.80589 -35.52657 -35.37061 -35.25359 -32.68375 -32.50703 -29.35852 -28.39632 -27.80569 -25.11834 -24.34980 -22.98167 -22.28337 -21.60889 -20.51259 -18.43291 -17.71948 -17.40479 -17.09319 -16.78868 -16.44725 -16.27540 -15.72346 -15.20341 -14.99640 -14.69932 -14.57542 -14.33558 -14.11070 -13.96091 -13.52010 -13.47484 -13.28304 -12.94620 -12.70169 -12.41416 -12.25801 -12.19602 -12.03170 -12.00869 -11.77259 -11.61974 -11.27549 -11.23254 -11.18318 -11.14875 -10.89240 -10.82843 -10.63413 -10.52578 -10.10955 -9.81983 -9.05062 -8.55232 -8.49769 -8.07110 -6.13780 -4.20874 1.16249 3.19241 3.24412 3.30923 3.31489 3.38315 3.63202 3.65620 4.00394 4.13484 4.31470 4.34064 4.69932 4.75338 4.89653 4.98643 5.07505 5.11626 5.20322 5.25085 5.30610 5.38908 5.49039 5.55483 5.57536 5.68119 5.76464 5.91762 6.04231 6.13393 6.26761 6.29177 6.48311 6.60046 6.78295 6.81767 7.29952 7.39635 7.59037 7.82884 8.11905 8.84328 9.45536 10.94102 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.005241 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.489276 B = 5341.263268 C = 7043.172924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.996 5.996 3 C 0.244 3.756 4 C -0.540 4.540 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.274 1.274 12 S 2.785 3.215 13 O -0.999 6.999 14 O -0.976 6.976 15 N -1.005 6.005 16 C 0.126 3.874 17 C 0.052 3.948 18 N -0.526 5.526 19 C 0.018 3.982 20 C 0.276 3.724 21 F -0.196 7.196 22 F -0.191 7.191 23 C -0.149 4.149 24 C 0.054 3.946 25 H 0.071 0.929 26 C 0.144 3.856 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.265 0.735 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 -13.923 -6.846 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.838 5.838 3 C 0.122 3.878 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.199 1.199 12 S 2.794 3.206 13 O -0.983 6.983 14 O -0.960 6.960 15 N -0.844 5.844 16 C 0.000 4.000 17 C -0.077 4.077 18 N -0.252 5.252 19 C -0.111 4.111 20 C 0.239 3.761 21 F -0.177 7.177 22 F -0.172 7.172 23 C -0.188 4.188 24 C -0.056 4.056 25 H 0.089 0.911 26 C 0.018 3.982 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.200 -13.881 -6.318 15.298 hybrid contribution 0.431 -0.014 -1.115 1.196 sum -0.770 -13.895 -7.433 15.777 Atomic orbital electron populations 1.21213 0.80088 1.02070 1.00594 1.57648 1.14226 1.23450 1.88452 1.19229 0.92130 0.78843 0.97612 1.21505 1.36666 1.06888 0.92850 0.91876 1.24953 0.95199 0.96486 0.97173 1.69927 1.36675 1.15165 1.30999 0.86644 0.78297 0.78256 0.84722 1.20286 1.21277 1.19915 1.01787 0.73155 0.72716 0.72929 1.93521 1.67410 1.60478 1.76898 1.93565 1.40779 1.85273 1.76360 1.58238 1.29389 1.64788 1.31938 1.21444 0.90353 0.91680 0.96566 1.22361 0.93786 0.96098 0.95490 1.62962 1.10325 1.33055 1.18831 1.23454 0.91104 0.95948 1.00639 1.22118 0.87103 0.87923 0.78908 1.93025 1.66730 1.67154 1.90794 1.93025 1.95569 1.90812 1.37768 1.23424 1.01011 0.97540 0.96820 1.23050 0.90282 0.98448 0.93792 0.91086 1.21428 0.85327 0.93884 0.97543 0.93775 0.90759 0.92998 0.94467 0.93161 0.92507 0.88770 0.90764 0.93919 0.89303 0.91366 0.87491 0.87801 0.86692 0.89315 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.78 10.31 59.84 0.62 2.39 16 2 N -1.00 -19.94 3.23 -123.05 -0.40 -20.34 16 3 C 0.24 5.87 5.41 -5.19 -0.03 5.84 16 4 C -0.54 -13.52 9.38 -34.44 -0.32 -13.84 16 5 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 8 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 S 2.78 53.25 6.09 -107.50 -0.65 52.59 16 13 O -1.00 -19.46 15.74 -57.17 -0.90 -20.36 16 14 O -0.98 -21.64 15.25 -57.17 -0.87 -22.51 16 15 N -1.01 -15.98 3.40 -112.96 -0.38 -16.36 16 16 C 0.13 1.60 6.64 -3.42 -0.02 1.58 16 17 C 0.05 0.56 5.94 -4.07 -0.02 0.53 16 18 N -0.53 -6.12 4.65 -224.55 -1.04 -7.16 16 19 C 0.02 0.18 6.55 -3.17 -0.02 0.16 16 20 C 0.28 3.15 2.66 -24.60 -0.07 3.09 16 21 F -0.20 -2.39 17.10 2.25 0.04 -2.35 16 22 F -0.19 -2.39 17.11 2.25 0.04 -2.35 16 23 C -0.15 -1.72 6.19 -25.01 -0.15 -1.87 16 24 C 0.05 0.68 2.83 -66.37 -0.19 0.50 16 25 H 0.07 0.90 8.04 -51.93 -0.42 0.49 16 26 C 0.14 2.24 6.17 -3.59 -0.02 2.22 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 29 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 30 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 31 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.09 1.15 6.83 -51.93 -0.35 0.79 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.46 8.03 -51.92 -0.42 0.04 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.62 7.93 -51.93 -0.41 0.21 16 38 H 0.11 0.97 8.04 -51.93 -0.42 0.55 16 39 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 40 H 0.11 1.34 8.08 -51.93 -0.42 0.92 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.10 1.79 6.90 -51.93 -0.36 1.43 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -30.62 355.82 -9.49 -40.11 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.06 Total: 0.12 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.33 Total: 2.20 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -1.09 Total: -67.87 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -1.77 Total: -42.87 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.08 Total: -4.70 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 53.25 SS G_CDS: -0.65 Total: 52.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.62 -9.49 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592058437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.674 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds