Wall clock time and date at job start Tue Mar 31 2020 22:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00073 * 2 1 4 4 C 1.50697 * 109.46863 * 274.99925 * 3 2 1 5 5 H 1.07998 * 120.00462 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99742 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99677 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00029 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47090 * 59.99785 * 8 6 4 10 10 H 1.48497 * 109.47277 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47400 * 300.00138 * 8 6 4 12 12 S 1.65602 * 120.00312 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.39983 * 336.46248 * 12 2 1 14 14 O 1.42092 * 106.40801 * 203.54071 * 12 2 1 15 15 N 1.65605 * 107.21716 * 89.99614 * 12 2 1 16 16 C 1.46850 * 120.21949 * 270.02739 * 15 12 2 17 17 C 1.53821 * 109.80412 * 226.98325 * 16 15 12 18 18 N 1.45652 * 107.82472 * 308.83736 * 17 16 15 19 19 C 1.46413 * 116.81492 * 186.03335 * 18 17 16 20 20 C 1.54752 * 106.02647 * 208.34331 * 19 18 17 21 21 F 1.39905 * 110.33282 * 122.41009 * 20 19 18 22 22 F 1.39899 * 110.33375 * 244.53683 * 20 19 18 23 23 C 1.55282 * 105.00429 * 3.52532 * 20 19 18 24 24 C 1.48730 * 109.85251 * 65.96293 * 18 17 16 25 25 H 1.08998 * 111.28663 * 50.89346 * 24 18 17 26 26 C 1.47656 * 120.21690 * 90.00411 * 15 12 2 27 27 H 1.09007 * 109.46916 * 269.99719 * 1 2 3 28 28 H 1.08998 * 109.47297 * 29.99663 * 1 2 3 29 29 H 1.09000 * 109.47061 * 149.99824 * 1 2 3 30 30 H 1.08995 * 109.47173 * 35.00246 * 3 2 1 31 31 H 1.09006 * 109.46973 * 155.00288 * 3 2 1 32 32 H 0.97005 * 119.99399 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.41964 * 347.09112 * 16 15 12 34 34 H 1.09005 * 109.41753 * 106.95941 * 16 15 12 35 35 H 1.09011 * 109.78642 * 68.41752 * 17 16 15 36 36 H 1.08996 * 109.79171 * 189.19638 * 17 16 15 37 37 H 1.08995 * 110.14075 * 327.48814 * 19 18 17 38 38 H 1.08995 * 110.13575 * 89.20648 * 19 18 17 39 39 H 1.08998 * 110.86974 * 140.36208 * 23 20 19 40 40 H 1.08996 * 110.86588 * 263.83257 * 23 20 19 41 41 H 1.08996 * 110.01019 * 249.07259 * 26 15 12 42 42 H 1.09007 * 110.00646 * 10.47500 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9282 1.1938 -2.2331 6 6 2.9997 2.9509 -1.6664 7 7 3.5025 3.6474 -0.6705 8 14 3.1776 3.5672 -3.4207 9 1 1.8309 3.7726 -4.0121 10 1 3.9191 4.8538 -3.4207 11 1 3.9234 2.5655 -4.2242 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4063 0.5455 14 8 3.5759 -1.1566 0.5449 15 7 2.5381 -1.8594 -1.5810 16 6 1.5482 -2.6832 -2.2867 17 6 2.2586 -3.8217 -3.0385 18 7 3.3257 -3.2321 -3.8354 19 6 4.0469 -4.1290 -4.7405 20 6 5.4692 -3.5367 -4.8852 21 9 6.4294 -4.4776 -4.4980 22 9 5.6940 -3.1287 -6.2044 23 6 5.4949 -2.3141 -3.9281 24 6 4.3626 -2.6518 -2.9408 25 1 4.6836 -3.3717 -2.1880 26 6 3.7530 -1.4122 -2.2911 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6502 2.0043 0.5894 31 1 3.1858 1.1177 0.4343 32 1 3.9653 4.4814 -0.8471 33 1 0.8486 -3.1061 -1.5658 34 1 1.0038 -2.0641 -2.9998 35 1 2.6795 -4.5294 -2.3241 36 1 1.5496 -4.3327 -3.6898 37 1 4.0990 -5.1305 -4.3136 38 1 3.5525 -4.1594 -5.7113 39 1 6.4524 -2.2452 -3.4118 40 1 5.2805 -1.3927 -4.4694 41 1 3.4904 -0.6813 -3.0558 42 1 4.4590 -0.9764 -1.5841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592058437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:49 Heat of formation + Delta-G solvation = -173.796931 kcal Electronic energy + Delta-G solvation = -29805.529979 eV Core-core repulsion = 25389.607134 eV Total energy + Delta-G solvation = -4415.922845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.98570 -48.11492 -40.73614 -38.40433 -37.19272 -36.92459 -36.44009 -34.45266 -33.64939 -30.35166 -29.65622 -29.32275 -26.75481 -25.43951 -24.17621 -23.90408 -22.50095 -21.56433 -19.84956 -18.87834 -18.69398 -18.47058 -18.16668 -18.02050 -17.30065 -17.17082 -16.52310 -16.13663 -15.95847 -15.53879 -15.46643 -15.33138 -15.03214 -14.96804 -14.83624 -14.45229 -14.03084 -13.95791 -13.92355 -13.65200 -13.41477 -13.37049 -13.32846 -13.13446 -12.99456 -12.89607 -12.67680 -12.48487 -12.38312 -12.33449 -12.24779 -11.96893 -11.85317 -11.74022 -11.62496 -10.55046 -10.19663 -9.75580 -9.47174 -8.13864 -6.27589 -0.34823 1.47568 1.47830 1.55542 1.89935 2.40026 2.45394 2.52417 2.72768 2.76524 3.17008 3.18874 3.36485 3.45071 3.70651 3.90275 4.03136 4.06513 4.11220 4.24164 4.27990 4.39336 4.48130 4.56678 4.67438 4.72526 4.73447 4.80537 4.83455 4.92267 5.03787 5.06792 5.10608 5.28652 5.45026 5.55338 5.66589 5.78011 5.95581 5.97292 6.12764 6.84661 7.42885 8.94130 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.005241 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.489276 B = 5341.263268 C = 7043.172924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.004 6.004 3 C 0.258 3.742 4 C -0.536 4.536 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.930 5.930 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.291 1.291 11 H -0.261 1.261 12 S 2.795 3.205 13 O -1.001 7.001 14 O -1.013 7.013 15 N -1.001 6.001 16 C 0.117 3.883 17 C 0.054 3.946 18 N -0.532 5.532 19 C 0.024 3.976 20 C 0.275 3.725 21 F -0.201 7.201 22 F -0.197 7.197 23 C -0.150 4.150 24 C 0.058 3.942 25 H 0.071 0.929 26 C 0.143 3.857 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.265 0.735 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.387 -15.623 -9.105 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.845 5.845 3 C 0.134 3.866 4 C -0.575 4.575 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.569 5.569 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.217 1.217 11 H -0.185 1.185 12 S 2.805 3.195 13 O -0.985 6.985 14 O -0.997 6.997 15 N -0.841 5.841 16 C -0.008 4.008 17 C -0.075 4.075 18 N -0.258 5.258 19 C -0.104 4.104 20 C 0.239 3.761 21 F -0.182 7.182 22 F -0.178 7.178 23 C -0.189 4.189 24 C -0.051 4.051 25 H 0.089 0.911 26 C 0.018 3.982 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.141 0.859 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.099 0.901 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.304 -15.611 -8.577 17.960 hybrid contribution 0.727 0.458 -0.387 0.943 sum -1.577 -15.153 -8.964 17.676 Atomic orbital electron populations 1.21452 0.78028 1.03425 1.01792 1.57589 1.15682 1.22165 1.89064 1.18770 0.90787 0.80113 0.96884 1.21751 1.35786 1.06661 0.93322 0.90902 1.25776 0.95010 0.96859 1.00962 1.70064 1.37955 1.15699 1.33228 0.85645 0.78537 0.77634 0.80138 1.19453 1.21694 1.18521 1.01288 0.72225 0.72341 0.73605 1.93508 1.67288 1.60150 1.77581 1.93515 1.42657 1.85708 1.77828 1.58004 1.30214 1.64916 1.31013 1.21764 0.90005 0.92162 0.96876 1.22418 0.93998 0.95168 0.95882 1.62939 1.10203 1.34013 1.18655 1.23482 0.89849 0.96072 1.01044 1.22202 0.87827 0.87723 0.78379 1.93017 1.67125 1.67254 1.90815 1.93013 1.95682 1.90916 1.38209 1.23424 1.00979 0.97759 0.96723 1.22882 0.90976 0.97127 0.94158 0.91088 1.21369 0.84923 0.95261 0.96669 0.92757 0.90825 0.90186 0.96436 0.96360 0.92634 0.88073 0.89845 0.93724 0.86037 0.89816 0.85872 0.87132 0.86885 0.90087 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.15 10.31 127.77 1.32 4.47 16 2 N -1.00 -40.32 3.23 -543.23 -1.75 -42.07 16 3 C 0.26 12.80 5.41 85.63 0.46 13.27 16 4 C -0.54 -27.01 9.38 25.60 0.24 -26.77 16 5 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 6 C 0.01 0.70 5.46 84.66 0.46 1.17 16 7 N -0.93 -52.96 13.29 21.45 0.28 -52.67 16 8 Si 0.96 40.91 29.54 68.60 2.03 42.93 16 9 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 S 2.80 106.72 6.09 -56.49 -0.34 106.38 16 13 O -1.00 -37.85 15.74 -128.00 -2.01 -39.87 16 14 O -1.01 -46.40 15.25 -128.00 -1.95 -48.35 16 15 N -1.00 -30.79 3.40 -511.31 -1.74 -32.53 16 16 C 0.12 2.66 6.64 86.59 0.58 3.24 16 17 C 0.05 0.98 5.94 86.82 0.52 1.49 16 18 N -0.53 -10.83 4.65 -864.33 -4.02 -14.85 16 19 C 0.02 0.40 6.55 86.99 0.57 0.97 16 20 C 0.28 5.68 2.66 31.98 0.08 5.77 16 21 F -0.20 -4.51 17.10 44.97 0.77 -3.74 16 22 F -0.20 -4.53 17.11 44.97 0.77 -3.76 16 23 C -0.15 -3.26 6.19 31.71 0.20 -3.06 16 24 C 0.06 1.41 2.83 44.78 0.13 1.53 16 25 H 0.07 1.72 8.04 -2.39 -0.02 1.70 16 26 C 0.14 4.43 6.17 86.04 0.53 4.96 16 27 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.07 2.35 8.07 -2.39 -0.02 2.34 16 29 H 0.08 2.09 7.79 -2.39 -0.02 2.07 16 30 H 0.02 0.92 8.11 -2.39 -0.02 0.90 16 31 H 0.02 1.02 6.91 -2.38 -0.02 1.01 16 32 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 33 H 0.10 2.17 6.83 -2.39 -0.02 2.16 16 34 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.04 0.81 8.03 -2.38 -0.02 0.79 16 36 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.19 7.93 -2.39 -0.02 1.17 16 38 H 0.12 1.73 8.04 -2.39 -0.02 1.71 16 39 H 0.11 2.21 8.13 -2.39 -0.02 2.19 16 40 H 0.11 2.50 8.08 -2.39 -0.02 2.48 16 41 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.08 2.87 6.90 -2.38 -0.02 2.85 16 Total: -1.00 -66.04 355.82 -1.86 -67.90 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.03 Total: 13.60 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.08 Total: 7.03 kcal Atomic # 7 Polarization: -134.89 SS G_CDS: -7.23 Total: -142.12 kcal Atomic # 8 Polarization: -84.25 SS G_CDS: -3.97 Total: -88.22 kcal Atomic # 9 Polarization: -9.04 SS G_CDS: 1.54 Total: -7.50 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 106.72 SS G_CDS: -0.34 Total: 106.38 kcal Total: -66.04 -1.86 -67.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592058437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.894 kcal (2) G-P(sol) polarization free energy of solvation -66.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds