Wall clock time and date at job start Tue Mar 31 2020 22:37:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30822 * 1
3 3 Si 1.86797 * 120.00259 * 2 1
4 4 H 1.48496 * 109.47065 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.47082 * 300.00128 * 3 2 1
6 6 H 1.48503 * 109.47104 * 59.99757 * 3 2 1
7 7 C 1.39944 * 119.99452 * 180.02562 * 2 1 3
8 8 H 1.08009 * 119.99419 * 168.33429 * 7 2 1
9 9 C 1.41392 * 120.00384 * 348.33474 * 7 2 1
10 10 C 1.40737 * 120.24543 * 331.75216 * 9 7 2
11 11 C 1.37594 * 119.74208 * 180.27911 * 10 9 7
12 12 C 1.38651 * 120.25355 * 359.70046 * 11 10 9
13 13 C 1.38620 * 120.49838 * 0.02562 * 12 11 10
14 14 C 1.37633 * 120.25059 * 359.97438 * 13 12 11
15 15 S 1.76197 * 120.13006 * 180.02562 * 14 13 12
16 16 O 1.42101 * 106.40384 * 132.25538 * 15 14 13
17 17 O 1.42104 * 106.40097 * 359.33550 * 15 14 13
18 18 N 1.65597 * 107.21852 * 245.79699 * 15 14 13
19 19 C 1.46498 * 120.00107 * 62.80164 * 18 15 14
20 20 C 1.53002 * 109.47190 * 165.98404 * 19 18 15
21 21 O 1.42897 * 109.47349 * 300.00470 * 20 19 18
22 22 C 1.52995 * 109.47098 * 179.97438 * 20 19 18
23 23 C 1.53002 * 109.47098 * 179.97438 * 22 20 19
24 24 C 1.52997 * 109.46638 * 60.00670 * 23 22 20
25 25 C 1.52995 * 109.47202 * 299.99531 * 24 23 22
26 26 C 1.53002 * 109.46941 * 60.00655 * 25 24 23
27 27 H 0.96999 * 120.00082 * 359.97438 * 1 2 3
28 28 H 1.07998 * 120.12208 * 0.02562 * 10 9 7
29 29 H 1.08008 * 119.87312 * 179.72544 * 11 10 9
30 30 H 1.08002 * 119.75562 * 180.02562 * 12 11 10
31 31 H 1.07999 * 119.87124 * 179.97438 * 13 12 11
32 32 H 0.96998 * 119.99920 * 242.80250 * 18 15 14
33 33 H 1.09001 * 109.46761 * 45.98748 * 19 18 15
34 34 H 1.08998 * 109.47105 * 285.99192 * 19 18 15
35 35 H 0.96698 * 113.99981 * 59.99419 * 21 20 19
36 36 H 1.09004 * 109.47120 * 60.00449 * 22 20 19
37 37 H 1.08994 * 109.47993 * 300.00558 * 22 20 19
38 38 H 1.08990 * 109.47390 * 300.00626 * 23 22 20
39 39 H 1.09002 * 109.47424 * 180.02562 * 23 22 20
40 40 H 1.08996 * 109.47696 * 60.00000 * 24 23 22
41 41 H 1.09008 * 109.47106 * 180.02562 * 24 23 22
42 42 H 1.09004 * 109.47493 * 180.02562 * 25 24 23
43 43 H 1.08994 * 109.47777 * 300.00325 * 25 24 23
44 44 H 1.09001 * 109.46947 * 180.02562 * 26 25 24
45 45 H 1.08990 * 109.47390 * 59.99734 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.7022 1.3462 -0.0006
5 1 1.8835 2.3964 -1.2125
6 1 1.8835 2.3964 1.2125
7 6 2.0078 -1.2120 -0.0005
8 1 3.0712 -1.2216 -0.1897
9 6 1.3227 -2.4240 0.2465
10 6 0.1621 -2.4327 1.0424
11 6 -0.4932 -3.6188 1.2809
12 6 -0.0177 -4.8015 0.7353
13 6 1.1212 -4.8039 -0.0548
14 6 1.7929 -3.6293 -0.3067
15 16 3.2399 -3.6359 -1.3120
16 8 3.0808 -2.5814 -2.2512
17 8 3.4589 -4.9878 -1.6911
18 7 4.5126 -3.2101 -0.3420
19 6 4.8859 -4.0597 0.7916
20 6 6.2694 -3.6511 1.3015
21 8 7.2283 -3.8066 0.2535
22 6 6.6589 -4.5379 2.4857
23 6 8.0427 -4.1297 2.9951
24 6 8.0103 -2.6670 3.4425
25 6 7.6208 -1.7800 2.2582
26 6 6.2370 -2.1882 1.7488
27 1 -0.4850 0.8400 0.0004
28 1 -0.2104 -1.5125 1.4677
29 1 -1.3816 -3.6286 1.8951
30 1 -0.5386 -5.7279 0.9274
31 1 1.4829 -5.7310 -0.4743
32 1 5.0110 -2.3982 -0.5243
33 1 4.9095 -5.1017 0.4724
34 1 4.1544 -3.9411 1.5909
35 1 7.0439 -3.2721 -0.5309
36 1 6.6824 -5.5801 2.1670
37 1 5.9275 -4.4190 3.2850
38 1 8.7739 -4.2491 2.1958
39 1 8.3205 -4.7618 3.8386
40 1 7.2791 -2.5475 4.2419
41 1 8.9963 -2.3759 3.8050
42 1 7.5981 -0.7378 2.5768
43 1 8.3520 -1.8994 1.4588
44 1 5.9597 -1.5566 0.9049
45 1 5.5058 -2.0689 2.5482
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601353823.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:37:46
Heat of formation + Delta-G solvation = -131.614249 kcal
Electronic energy + Delta-G solvation = -28978.832042 eV
Core-core repulsion = 25086.675154 eV
Total energy + Delta-G solvation = -3892.156888 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-39.68038 -37.62647 -36.25312 -35.42675 -34.86250 -34.06344 -33.84488 -30.92265
-30.28242 -29.91704 -29.57334 -25.64214 -25.25115 -22.74668 -21.69272 -21.32254
-21.12168 -19.77617 -18.73453 -17.74831 -17.14360 -16.51423 -16.17093 -15.66772
-15.42590 -15.20283 -14.54918 -14.46819 -14.28011 -13.88829 -13.85613 -13.33307
-13.19011 -13.11687 -12.80828 -12.58182 -12.24896 -12.10643 -11.91465 -11.74442
-11.56611 -11.31801 -11.27577 -11.20503 -11.11821 -11.04653 -10.98963 -10.79740
-10.75202 -10.53117 -10.51805 -10.06028 -9.93629 -9.61447 -9.50281 -9.47352
-8.83745 -8.07198 -7.63924 -7.06958 -4.80181 1.48960 2.29953 2.68632
2.93050 2.98118 3.06585 3.72692 3.87283 4.23052 4.37050 4.58259
4.70706 4.72545 4.76622 5.07110 5.18733 5.21417 5.28520 5.40774
5.50206 5.56290 5.59259 5.70700 5.82929 5.84381 5.97877 6.00316
6.01967 6.10796 6.14447 6.18980 6.20928 6.22590 6.33839 6.39056
6.45380 6.73380 6.91736 7.04557 7.26675 7.39925 7.47100 7.62821
7.72252 7.77714 7.85378 8.25036 8.46078 8.61330 9.85916
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.010325 B = 0.005157 C = 0.004288
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2711.101458 B = 5428.120416 C = 6528.529633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.776 5.776
2 C 0.080 3.920
3 Si 0.915 3.085
4 H -0.255 1.255
5 H -0.268 1.268
6 H -0.270 1.270
7 C -0.444 4.444
8 H 0.087 0.913
9 C 0.186 3.814
10 C -0.158 4.158
11 C -0.076 4.076
12 C -0.250 4.250
13 C -0.003 4.003
14 C -0.775 4.775
15 S 2.701 3.299
16 O -0.964 6.964
17 O -0.996 6.996
18 N -1.122 6.122
19 C 0.098 3.902
20 C 0.133 3.867
21 O -0.553 6.553
22 C -0.105 4.105
23 C -0.113 4.113
24 C -0.119 4.119
25 C -0.115 4.115
26 C -0.148 4.148
27 H 0.287 0.713
28 H 0.125 0.875
29 H 0.094 0.906
30 H 0.094 0.906
31 H 0.108 0.892
32 H 0.407 0.593
33 H 0.082 0.918
34 H 0.074 0.926
35 H 0.374 0.626
36 H 0.071 0.929
37 H 0.078 0.922
38 H 0.070 0.930
39 H 0.058 0.942
40 H 0.060 0.940
41 H 0.057 0.943
42 H 0.059 0.941
43 H 0.066 0.934
44 H 0.069 0.931
45 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.889 -1.426 6.835 12.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.399 5.399
2 C -0.141 4.141
3 Si 0.739 3.261
4 H -0.178 1.178
5 H -0.193 1.193
6 H -0.195 1.195
7 C -0.472 4.472
8 H 0.105 0.895
9 C 0.182 3.818
10 C -0.178 4.178
11 C -0.095 4.095
12 C -0.270 4.270
13 C -0.023 4.023
14 C -0.870 4.870
15 S 2.798 3.202
16 O -0.955 6.955
17 O -0.987 6.987
18 N -0.880 5.880
19 C -0.029 4.029
20 C 0.091 3.909
21 O -0.359 6.359
22 C -0.143 4.143
23 C -0.151 4.151
24 C -0.157 4.157
25 C -0.152 4.152
26 C -0.186 4.186
27 H 0.098 0.902
28 H 0.143 0.857
29 H 0.112 0.888
30 H 0.113 0.887
31 H 0.126 0.874
32 H 0.241 0.759
33 H 0.100 0.900
34 H 0.092 0.908
35 H 0.222 0.778
36 H 0.090 0.910
37 H 0.096 0.904
38 H 0.089 0.911
39 H 0.077 0.923
40 H 0.078 0.922
41 H 0.076 0.924
42 H 0.077 0.923
43 H 0.085 0.915
44 H 0.088 0.912
45 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 10.947 -2.055 6.370 12.831
hybrid contribution -0.512 1.618 0.173 1.706
sum 10.435 -0.437 6.543 12.325
Atomic orbital electron populations
1.69783 1.07767 1.30041 1.32297 1.25950 0.94886 1.01840 0.91446
0.86124 0.81091 0.80046 0.78883 1.17832 1.19308 1.19471 1.19855
0.96720 0.90765 1.39894 0.89527 1.17007 0.90224 0.89702 0.84901
1.21521 0.98221 0.96809 1.01259 1.20909 0.97505 0.93496 0.97631
1.20496 1.01111 0.96961 1.08427 1.20260 0.93623 0.95128 0.93318
1.29843 1.25633 1.00718 1.30833 1.01090 0.73209 0.72432 0.73424
1.93548 1.85837 1.56591 1.59475 1.93455 1.86018 1.37263 1.81921
1.55731 1.50852 1.35986 1.45465 1.21861 0.96652 0.94923 0.89450
1.21323 0.86934 0.94697 0.87934 1.86484 1.50996 1.70603 1.27772
1.21488 0.97869 0.99280 0.95650 1.21430 0.97285 0.95854 1.00534
1.21540 1.00962 0.95306 0.97867 1.21451 0.96929 0.98703 0.98167
1.22230 0.98077 0.96049 1.02238 0.90167 0.85702 0.88823 0.88732
0.87438 0.75919 0.89998 0.90800 0.77827 0.90985 0.90382 0.91129
0.92322 0.92160 0.92376 0.92260 0.91483 0.91240 0.90356
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -18.73 10.86 55.55 0.60 -18.13 16
2 C 0.08 1.88 5.24 -17.34 -0.09 1.78 16
3 Si 0.92 17.56 29.58 -169.99 -5.03 12.53 16
4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16
5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16
6 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16
7 C -0.44 -10.77 7.63 -37.74 -0.29 -11.05 16
8 H 0.09 1.94 5.82 -52.48 -0.31 1.64 16
9 C 0.19 4.62 5.55 -106.82 -0.59 4.02 16
10 C -0.16 -3.83 8.67 -38.87 -0.34 -4.17 16
11 C -0.08 -1.68 10.02 -39.66 -0.40 -2.08 16
12 C -0.25 -5.37 10.05 -39.29 -0.39 -5.76 16
13 C 0.00 -0.08 9.53 -39.66 -0.38 -0.45 16
14 C -0.77 -18.09 5.90 -38.87 -0.23 -18.32 16
15 S 2.70 57.43 4.96 -107.50 -0.53 56.90 16
16 O -0.96 -23.41 16.52 -57.17 -0.94 -24.36 16
17 O -1.00 -22.42 16.53 -57.17 -0.94 -23.36 16
18 N -1.12 -18.40 4.57 -10.61 -0.05 -18.44 16
19 C 0.10 1.43 5.33 -4.04 -0.02 1.41 16
20 C 0.13 1.62 0.72 -90.62 -0.07 1.56 16
21 O -0.55 -6.92 11.62 -35.23 -0.41 -7.33 16
22 C -0.10 -1.14 4.95 -26.73 -0.13 -1.28 16
23 C -0.11 -1.12 5.78 -26.73 -0.15 -1.28 16
24 C -0.12 -1.13 5.92 -26.74 -0.16 -1.29 16
25 C -0.11 -1.19 5.78 -26.73 -0.15 -1.35 16
26 C -0.15 -1.73 4.75 -26.73 -0.13 -1.86 16
27 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16
28 H 0.13 3.05 6.21 -52.49 -0.33 2.72 16
29 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16
30 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16
31 H 0.11 2.23 7.32 -52.49 -0.38 1.85 16
32 H 0.41 5.84 6.46 -34.47 -0.22 5.61 16
33 H 0.08 1.23 7.82 -51.93 -0.41 0.83 16
34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
35 H 0.37 4.02 8.15 45.56 0.37 4.39 16
36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
38 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16
39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
41 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16
42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
43 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16
44 H 0.07 0.83 6.61 -51.93 -0.34 0.48 16
45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
LS Contribution 365.09 15.07 5.50 5.50
Total: -1.00 -30.20 365.09 -11.10 -41.30
By element:
Atomic # 1 Polarization: 21.29 SS G_CDS: -5.78 Total: 15.52 kcal
Atomic # 6 Polarization: -36.60 SS G_CDS: -3.52 Total: -40.12 kcal
Atomic # 7 Polarization: -37.13 SS G_CDS: 0.55 Total: -36.57 kcal
Atomic # 8 Polarization: -52.75 SS G_CDS: -2.30 Total: -55.05 kcal
Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal
Atomic # 16 Polarization: 57.43 SS G_CDS: -0.53 Total: 56.90 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -30.20 -11.10 -41.30 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601353823.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.316 kcal
(2) G-P(sol) polarization free energy of solvation -30.196 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.512 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.102 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.614 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds