Wall clock time and date at job start Tue Mar 31 2020 22:37:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30822 * 1
3 3 Si 1.86797 * 120.00259 * 2 1
4 4 H 1.48496 * 109.47065 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.47082 * 300.00128 * 3 2 1
6 6 H 1.48503 * 109.47104 * 59.99757 * 3 2 1
7 7 C 1.39944 * 119.99452 * 180.02562 * 2 1 3
8 8 H 1.08009 * 119.99419 * 168.33429 * 7 2 1
9 9 C 1.41392 * 120.00384 * 348.33474 * 7 2 1
10 10 C 1.40737 * 120.24543 * 331.75216 * 9 7 2
11 11 C 1.37594 * 119.74208 * 180.27911 * 10 9 7
12 12 C 1.38651 * 120.25355 * 359.70046 * 11 10 9
13 13 C 1.38620 * 120.49838 * 0.02562 * 12 11 10
14 14 C 1.37633 * 120.25059 * 359.97438 * 13 12 11
15 15 S 1.76197 * 120.13006 * 180.02562 * 14 13 12
16 16 O 1.42101 * 106.40384 * 132.25538 * 15 14 13
17 17 O 1.42104 * 106.40097 * 359.33550 * 15 14 13
18 18 N 1.65597 * 107.21852 * 245.79699 * 15 14 13
19 19 C 1.46498 * 120.00107 * 62.80164 * 18 15 14
20 20 C 1.53002 * 109.47190 * 165.98404 * 19 18 15
21 21 O 1.42897 * 109.47349 * 300.00470 * 20 19 18
22 22 C 1.52995 * 109.47098 * 179.97438 * 20 19 18
23 23 C 1.53002 * 109.47098 * 179.97438 * 22 20 19
24 24 C 1.52997 * 109.46638 * 60.00670 * 23 22 20
25 25 C 1.52995 * 109.47202 * 299.99531 * 24 23 22
26 26 C 1.53002 * 109.46941 * 60.00655 * 25 24 23
27 27 H 0.96999 * 120.00082 * 359.97438 * 1 2 3
28 28 H 1.07998 * 120.12208 * 0.02562 * 10 9 7
29 29 H 1.08008 * 119.87312 * 179.72544 * 11 10 9
30 30 H 1.08002 * 119.75562 * 180.02562 * 12 11 10
31 31 H 1.07999 * 119.87124 * 179.97438 * 13 12 11
32 32 H 0.96998 * 119.99920 * 242.80250 * 18 15 14
33 33 H 1.09001 * 109.46761 * 45.98748 * 19 18 15
34 34 H 1.08998 * 109.47105 * 285.99192 * 19 18 15
35 35 H 0.96698 * 113.99981 * 59.99419 * 21 20 19
36 36 H 1.09004 * 109.47120 * 60.00449 * 22 20 19
37 37 H 1.08994 * 109.47993 * 300.00558 * 22 20 19
38 38 H 1.08990 * 109.47390 * 300.00626 * 23 22 20
39 39 H 1.09002 * 109.47424 * 180.02562 * 23 22 20
40 40 H 1.08996 * 109.47696 * 60.00000 * 24 23 22
41 41 H 1.09008 * 109.47106 * 180.02562 * 24 23 22
42 42 H 1.09004 * 109.47493 * 180.02562 * 25 24 23
43 43 H 1.08994 * 109.47777 * 300.00325 * 25 24 23
44 44 H 1.09001 * 109.46947 * 180.02562 * 26 25 24
45 45 H 1.08990 * 109.47390 * 59.99734 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.7022 1.3462 -0.0006
5 1 1.8835 2.3964 -1.2125
6 1 1.8835 2.3964 1.2125
7 6 2.0078 -1.2120 -0.0005
8 1 3.0712 -1.2216 -0.1897
9 6 1.3227 -2.4240 0.2465
10 6 0.1621 -2.4327 1.0424
11 6 -0.4932 -3.6188 1.2809
12 6 -0.0177 -4.8015 0.7353
13 6 1.1212 -4.8039 -0.0548
14 6 1.7929 -3.6293 -0.3067
15 16 3.2399 -3.6359 -1.3120
16 8 3.0808 -2.5814 -2.2512
17 8 3.4589 -4.9878 -1.6911
18 7 4.5126 -3.2101 -0.3420
19 6 4.8859 -4.0597 0.7916
20 6 6.2694 -3.6511 1.3015
21 8 7.2283 -3.8066 0.2535
22 6 6.6589 -4.5379 2.4857
23 6 8.0427 -4.1297 2.9951
24 6 8.0103 -2.6670 3.4425
25 6 7.6208 -1.7800 2.2582
26 6 6.2370 -2.1882 1.7488
27 1 -0.4850 0.8400 0.0004
28 1 -0.2104 -1.5125 1.4677
29 1 -1.3816 -3.6286 1.8951
30 1 -0.5386 -5.7279 0.9274
31 1 1.4829 -5.7310 -0.4743
32 1 5.0110 -2.3982 -0.5243
33 1 4.9095 -5.1017 0.4724
34 1 4.1544 -3.9411 1.5909
35 1 7.0439 -3.2721 -0.5309
36 1 6.6824 -5.5801 2.1670
37 1 5.9275 -4.4190 3.2850
38 1 8.7739 -4.2491 2.1958
39 1 8.3205 -4.7618 3.8386
40 1 7.2791 -2.5475 4.2419
41 1 8.9963 -2.3759 3.8050
42 1 7.5981 -0.7378 2.5768
43 1 8.3520 -1.8994 1.4588
44 1 5.9597 -1.5566 0.9049
45 1 5.5058 -2.0689 2.5482
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601353823.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:37:45
Heat of formation + Delta-G solvation = -151.860223 kcal
Electronic energy + Delta-G solvation = -28979.709974 eV
Core-core repulsion = 25086.675154 eV
Total energy + Delta-G solvation = -3893.034819 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.64625 -39.37963 -38.04390 -36.67890 -36.41527 -35.68910 -35.16590 -32.03389
-31.78054 -31.36227 -30.91220 -27.37609 -26.39811 -23.63629 -23.41738 -22.95204
-22.21004 -20.65830 -20.31572 -19.50947 -18.67047 -18.09067 -17.35879 -17.12404
-16.96162 -16.41256 -16.02684 -15.90113 -15.35774 -15.13603 -14.94981 -14.90465
-14.82646 -14.48250 -14.09638 -13.72331 -13.55885 -13.26548 -13.13885 -13.11321
-12.99919 -12.93806 -12.90279 -12.84215 -12.80621 -12.51632 -12.37413 -12.11275
-11.92073 -11.65273 -11.64950 -11.32626 -11.21471 -11.17139 -10.94449 -10.58384
-10.28481 -9.84302 -9.43336 -8.79686 -6.61318 -0.18629 0.52726 0.96740
1.36276 1.49210 1.51227 2.14591 2.31608 2.63202 2.96801 3.30690
3.47568 3.60703 3.79074 3.83186 3.93360 4.23131 4.27328 4.32699
4.35679 4.50086 4.54757 4.60254 4.65510 4.67376 4.71846 4.78785
4.90108 4.97067 5.03159 5.13097 5.15547 5.18048 5.29950 5.32098
5.34032 5.40016 5.44230 5.51871 5.64168 5.70740 5.82363 6.00758
6.07729 6.13137 6.47604 6.67546 6.79453 6.83619 8.16361
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.010325 B = 0.005157 C = 0.004288
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2711.101458 B = 5428.120416 C = 6528.529633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.808 5.808
2 C 0.038 3.962
3 Si 0.974 3.026
4 H -0.244 1.244
5 H -0.271 1.271
6 H -0.256 1.256
7 C -0.470 4.470
8 H 0.095 0.905
9 C 0.163 3.837
10 C -0.185 4.185
11 C -0.076 4.076
12 C -0.250 4.250
13 C -0.017 4.017
14 C -0.792 4.792
15 S 2.722 3.278
16 O -0.998 6.998
17 O -1.010 7.010
18 N -1.107 6.107
19 C 0.094 3.906
20 C 0.140 3.860
21 O -0.559 6.559
22 C -0.109 4.109
23 C -0.109 4.109
24 C -0.118 4.118
25 C -0.113 4.113
26 C -0.150 4.150
27 H 0.295 0.705
28 H 0.115 0.885
29 H 0.121 0.879
30 H 0.126 0.874
31 H 0.121 0.879
32 H 0.417 0.583
33 H 0.077 0.923
34 H 0.072 0.928
35 H 0.381 0.619
36 H 0.070 0.930
37 H 0.086 0.914
38 H 0.060 0.940
39 H 0.073 0.927
40 H 0.063 0.937
41 H 0.070 0.930
42 H 0.065 0.935
43 H 0.064 0.936
44 H 0.064 0.936
45 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.095 -1.353 7.994 14.562
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.432 5.432
2 C -0.179 4.179
3 Si 0.793 3.207
4 H -0.166 1.166
5 H -0.196 1.196
6 H -0.180 1.180
7 C -0.498 4.498
8 H 0.113 0.887
9 C 0.158 3.842
10 C -0.205 4.205
11 C -0.095 4.095
12 C -0.270 4.270
13 C -0.037 4.037
14 C -0.886 4.886
15 S 2.818 3.182
16 O -0.988 6.988
17 O -1.000 7.000
18 N -0.869 5.869
19 C -0.032 4.032
20 C 0.098 3.902
21 O -0.366 6.366
22 C -0.147 4.147
23 C -0.147 4.147
24 C -0.156 4.156
25 C -0.150 4.150
26 C -0.188 4.188
27 H 0.106 0.894
28 H 0.133 0.867
29 H 0.139 0.861
30 H 0.144 0.856
31 H 0.139 0.861
32 H 0.254 0.746
33 H 0.095 0.905
34 H 0.091 0.909
35 H 0.229 0.771
36 H 0.089 0.911
37 H 0.105 0.895
38 H 0.079 0.921
39 H 0.092 0.908
40 H 0.082 0.918
41 H 0.088 0.912
42 H 0.084 0.916
43 H 0.083 0.917
44 H 0.083 0.917
45 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 12.139 -1.992 7.536 14.426
hybrid contribution -0.918 1.475 -0.184 1.747
sum 11.221 -0.516 7.351 13.424
Atomic orbital electron populations
1.69825 1.09060 1.31281 1.33069 1.26808 0.95625 1.04825 0.90688
0.85264 0.80396 0.75925 0.79107 1.16640 1.19578 1.18016 1.20154
0.97336 0.91375 1.40957 0.88703 1.17310 0.90872 0.90515 0.85467
1.21585 0.99156 0.97370 1.02415 1.21248 0.97980 0.92948 0.97286
1.20885 1.00691 0.98057 1.07390 1.20572 0.94058 0.95394 0.93648
1.30134 1.26945 1.00787 1.30708 1.00312 0.73226 0.71595 0.73052
1.93495 1.86536 1.57576 1.61193 1.93430 1.86242 1.37966 1.82371
1.55270 1.49320 1.36777 1.45556 1.22065 0.98309 0.94340 0.88536
1.21304 0.85282 0.95415 0.88202 1.86481 1.50973 1.70915 1.28211
1.21563 0.98911 0.98888 0.95293 1.21401 0.96122 0.96481 1.00694
1.21547 1.01771 0.94733 0.97511 1.21439 0.95781 0.99304 0.98480
1.22243 0.99030 0.95481 1.02001 0.89438 0.86742 0.86056 0.85593
0.86148 0.74568 0.90474 0.90941 0.77085 0.91146 0.89508 0.92128
0.90826 0.91776 0.91155 0.91609 0.91714 0.91728 0.90689
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -39.68 10.86 21.83 0.24 -39.44 16
2 C 0.04 1.81 5.24 85.26 0.45 2.26 16
3 Si 0.97 35.48 29.58 68.60 2.03 37.51 16
4 H -0.24 -8.32 7.11 99.48 0.71 -7.61 16
5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16
6 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16
7 C -0.47 -23.07 7.63 23.46 0.18 -22.89 16
8 H 0.10 4.29 5.82 -2.91 -0.02 4.27 16
9 C 0.16 8.18 5.55 -21.29 -0.12 8.06 16
10 C -0.19 -9.08 8.67 22.73 0.20 -8.88 16
11 C -0.08 -3.28 10.02 22.22 0.22 -3.06 16
12 C -0.25 -10.39 10.05 22.46 0.23 -10.16 16
13 C -0.02 -0.75 9.53 22.22 0.21 -0.54 16
14 C -0.79 -37.16 5.90 22.73 0.13 -37.03 16
15 S 2.72 116.11 4.96 -56.49 -0.28 115.83 16
16 O -1.00 -49.02 16.52 -128.00 -2.12 -51.13 16
17 O -1.01 -45.23 16.53 -128.00 -2.12 -47.34 16
18 N -1.11 -35.92 4.57 -187.49 -0.86 -36.78 16
19 C 0.09 2.68 5.33 86.38 0.46 3.14 16
20 C 0.14 3.25 0.72 -10.79 -0.01 3.25 16
21 O -0.56 -13.30 11.62 -148.98 -1.73 -15.04 16
22 C -0.11 -2.19 4.95 30.59 0.15 -2.04 16
23 C -0.11 -1.93 5.78 30.59 0.18 -1.76 16
24 C -0.12 -1.96 5.92 30.59 0.18 -1.78 16
25 C -0.11 -2.11 5.78 30.59 0.18 -1.94 16
26 C -0.15 -3.30 4.75 30.60 0.15 -3.15 16
27 H 0.29 12.94 8.30 -92.71 -0.77 12.17 16
28 H 0.11 5.74 6.21 -2.91 -0.02 5.73 16
29 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16
30 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16
31 H 0.12 4.89 7.32 -2.91 -0.02 4.87 16
32 H 0.42 11.77 6.46 -96.75 -0.62 11.15 16
33 H 0.08 2.28 7.82 -2.39 -0.02 2.26 16
34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16
35 H 0.38 7.76 8.15 -74.06 -0.60 7.16 16
36 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16
37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
38 H 0.06 1.20 7.68 -2.39 -0.02 1.19 16
39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
41 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16
42 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16
43 H 0.06 1.25 7.68 -2.39 -0.02 1.23 16
44 H 0.06 1.46 6.61 -2.39 -0.02 1.45 16
45 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16
Total: -1.00 -64.23 365.09 -2.26 -66.49
By element:
Atomic # 1 Polarization: 46.62 SS G_CDS: -0.21 Total: 46.42 kcal
Atomic # 6 Polarization: -79.30 SS G_CDS: 2.78 Total: -76.52 kcal
Atomic # 7 Polarization: -75.60 SS G_CDS: -0.62 Total: -76.22 kcal
Atomic # 8 Polarization: -107.55 SS G_CDS: -5.96 Total: -113.51 kcal
Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal
Atomic # 16 Polarization: 116.11 SS G_CDS: -0.28 Total: 115.83 kcal
Total: -64.23 -2.26 -66.49 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601353823.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.372 kcal
(2) G-P(sol) polarization free energy of solvation -64.230 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.602 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.259 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.488 kcal
(6) G-S(sol) free energy of system = (1) + (5) -151.860 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds